>VFB736 (VFB736Q) /CSM/VF/VFB7-B/VFB736Q.Seq.d/
AGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTCACG
GTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGTCAT
TCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAGCTG
GTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAGAAA
TCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTGGTT
ATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAAGTG
ATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTTTCA
CCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTCTCC
AAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACAAAT
TAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCAATCG
TCGAAAAAGTTAACTTTGCTGTTGCCAAXXXXXXXXXX

SLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAG
MTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSD
NFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKL
KLTQKKAHVLEIQVNGGSIVEKVNFAVA---

Frame A:
shf*ttiti*vivnlklhvtvisvsdqereppdikvksshsqrmtvpkkst*lhswvtkl
v*ltlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlkplkvskptkpsglni*v
itsvedytktgtnqnqrklspntlnntklkkvknqlkplskpskrdvqssvslltlkftn
*n*lkrkhtslksksmvvqsskkltlllp---


Frame B:
vtskqq*qyess*i*sstsr*srfqtkkesrqtsr*sqvipkg*pypksplncihglqsw
ydsrcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrsrsqnlqnrlgstfk*
*lp*kiiqklvqikikesfhqir*tirn*rr*kin*slspshqkemfsrpchcshsssqi
kinskestrp*npsqwwfnrrks*lccc---


Frame C:
SLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGYKAG
MTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQHLSD
NFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQVHKL
KLTQKKAHVLEIQVNGGSIVEKVNFAVA---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFM836 (VFM836Q) /CSM/VF/VFM8-B/VFM836Q.Seq.d/                       1245   0.0
VFL379 (VFL379Q) /CSM/VF/VFL3-D/VFL379Q.Seq.d/                       1245   0.0
VFI511 (VFI511Q) /CSM/VF/VFI5-A/VFI511Q.Seq.d/                       1245   0.0
VFH213 (VFH213Q) /CSM/VF/VFH2-A/VFH213Q.Seq.d/                       1245   0.0
VFH212 (VFH212Q) /CSM/VF/VFH2-A/VFH212Q.Seq.d/                       1245   0.0
VFG182 (VFG182Q) /CSM/VF/VFG1-D/VFG182Q.Seq.d/                       1245   0.0
VFD709 (VFD709Q) /CSM/VF/VFD7-A/VFD709Q.Seq.d/                       1245   0.0
VFD212 (VFD212Q) /CSM/VF/VFD2-A/VFD212Q.Seq.d/                       1245   0.0
VFB816 (VFB816Q) /CSM/VF/VFB8-A/VFB816Q.Seq.d/                       1245   0.0
VFB736 (VFB736Q) /CSM/VF/VFB7-B/VFB736Q.Seq.d/                       1245   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds.  1187  0.0  2
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728.         42  5e-25  7
BE641342|BE641342.1 Cri2_3_A04_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_3_A04 5', mRNA sequence.    76  1e-22  3
AL398773|AL398773.1 T7 end of clone AS0AA011B09 of library AS0AA from strain CLIB 533 of Saccharomyces bayanus.    46  3e-18  6
BQ622709|BQ622709.1 CC_Contig5 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    62  1e-17  4
BM599962|BM599962.1 17000687050693 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449725551 5', mRNA sequence.    58  2e-17  5
AL436296|AL436296.1 T3 end of clone BC0AA002E09 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    40  2e-17  7
AL436279|AL436279.1 T3 end of clone BC0AA002D12 of library BC0AA from strain CBS 767 of Debaryomyces hansenii.    40  3e-17  7
J01351|J01351.1 S.cerevisiae ribosomal protein L3 (tcm1) gene.    46  1e-16  5
Z74971|Z74971.1 S.cerevisiae chromosome XV reading frame ORF YOR063w.    46  9e-16  5

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3;  &JC4254(JC4254...   405   e-112
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407....   291   1e-77
EF144245_1(EF144245|pid:none) Populus trichocarpa clone PX0011_L...   291   1e-77
EF146052_1(EF146052|pid:none) Populus trichocarpa clone WS0115_D...   290   2e-77
EF145479_1(EF145479|pid:none) Populus trichocarpa clone WS01125_...   289   4e-77
CR926481_1(CR926481|pid:none) Pongo abelii mRNA; cDNA DKFZp468G0...   288   9e-77
BC008492_1(BC008492|pid:none) Homo sapiens ribosomal protein L3,...   288   9e-77
(P39023) RecName: Full=60S ribosomal protein L3; AltName: Full=H...   288   9e-77
(P22738) RecName: Full=60S ribosomal protein L3-2;  &AC005850_7(...   288   1e-76
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib...   287   2e-76

 psg: 0.60  gvh: 0.20  alm: 0.36  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.06
 nuc: 0.31  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 16.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for VFB736 is nuc

>VFB736F.Seq
AGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTCCACGTCACG
GTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAGTCAAGTCAT
TCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTTACAAAGCTG
GTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACAAAAAAGAAA
TCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTTTAGTTGGTT
ATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAACATTTAAGTG
ATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGAAAGCTTTCA
CCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAGCCTCTCTCC
AAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAGTTCACAAAT
TAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTGGTTCAATCG
TCGAAAAAGTTAACTTTGCTGTTGCCAA----------