>VFB735 (VFB735Q) /CSM/VF/VFB7-B/VFB735Q.Seq.d/
GGCAAAAACACATTAACATTTTTAAAAATAAAAAATATATAAATTTTAAGAATGAATCAA
AATAAAAATAATAATAATAAAAATCCAAAAATTAATTTATTAATTATTGGATGTGGTTGT
ATTGGTTTATCAACAGGTATTATTGCATTAAAGAGTGGTAATTATAAGAGTGTATCAATT
TGGGCCAAAGATTTACCACCAAATACAACCTCAAATAAAGCAGCAGCATTATGGTATCCA
TTTTTATGTAATCCACTAGATTTAGTTGGTAAATGGTCAGCAGAAACCATGCAATATTAT
AAAGATCATATTATTAATGACCCAAAATCAGGTACAATCACAAAGAAAGTAAATGAAATT
TTCAGACXXXXXXXXXXTTCCNCGTTTAACAAANNCAGTTTTAGGTGGTACAAATCAAGA
ACCCGATTNCAATACNAATCCAACTAAAAAANATACTNAAGAAATNTTNAAACGTGTAGC
CATGATTTCNCCNCGTTTTGCTAAAAATANAATTGAAATTCAAGGTGTTAAAGTTGGTCT
ACGTCCTGCTANACATGAAATTCGTTTANAAAATGAATTCNTTNAAGGTGGTTCAAAATT
AGTAGTTCANAACTATGGTCATGGTGGTAGTGGTTTCNCTGTAAGTTGGGGTTGTGCTAT
TGAAGCAATTAAATTAGTTGATCAAGGCNTACCAAAATTATTACNTTTTAATAAATTAAT
AAGTNAATTATAAAAAAAAAAAAAGTAATATTAAAAAAAAAGTAATAATAAAATAAAAAA
AAAGAAAAGTTTTTTTA

gkntltflkikni*ILRMNQNKNNNNKNPKINLLIIGCGCIGLSTGIIALKSGNYKSVSI
WAKDLPPNTTSNKAAALWYPFLCNPLDLVGKWSAETMQYYKDHIINDPKSGTITKKVNEI
FR---

---PRLTXXVLGGTNQEPDXNTNPTKKXTXEXXKRVAMISPRFAKNXIEIQGVKVGLRPA
XHEIRLXNEFXXGGSKLVVXNYGHGGSGFXVSWGCAIEAIKLVDQGXPKLLXFNKLISXL
*kkkk*y*kksnnkikkkksff

Frame A:
gkntltflkikni*ILRMNQNKNNNNKNPKINLLIIGCGCIGLSTGIIALKSGNYKSVSI
WAKDLPPNTTSNKAAALWYPFLCNPLDLVGKWSAETMQYYKDHIINDPKSGTITKKVNEI
FR---

---fxv*qxqf*vvqiknpixixiqlkxilkkxxnv*p*fxxvllkixlkfkvlklvyvl
lxmkfvxkmnsxkvvqn**fxtmvmvvvvsl*vgvvllkqln*likayqnyyxlin**vn
ykkkksnikkkviik*kkrkvfl

Frame B:
akth*hf*k*kiykf*e*ikikiiiikiqkliy*lldvvvlvyqqvllh*rvviirvyqf
gpkiyhqiqpqikqqhygihfyvih*i*lvngqqkpcniikiillmtqnqvqsqrk*mkf
sd---

---sxfnkxsfrwyksrtrxqyxsn*kxyxrnxxtcshdfxxfc*kxn*nsrc*swstsc
xt*nsfxk*ixxrwfkisssxlwsww*wfxcklglcy*sn*is*srxtkiitf**inkxi
ikkkkvilkkk***nkkkekff

Frame C:
qkhinifknkkyinfknesk*k****kskn*finywmwlywfinryycikew*l*ecinl
gqrfttkynlk*sssimvsifm*strfsw*mvsrnhail*rsyy**pkirynhkesk*nf
q---

---PRLTXXVLGGTNQEPDXNTNPTKKXTXEXXKRVAMISPRFAKNXIEIQGVKVGLRPA
XHEIRLXNEFXXGGSKLVVXNYGHGGSGFXVSWGCAIEAIKLVDQGXPKLLXFNKLISXL
*kkkk*y*kksnnkikkkksff

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB735 (VFB735Q) /CSM/VF/VFB7-B/VFB735Q.Seq.d/                       1041   0.0
VHP792 (VHP792Q) /CSM/VH/VHP7-D/VHP792Q.Seq.d/                        537   e-152
SSJ325 (SSJ325Q) /CSM/SS/SSJ3-B/SSJ325Q.Seq.d/                         36   0.79
SSD523 (SSD523Q) /CSM/SS/SSD5-A/SSD523Q.Seq.d/                         36   0.79
VSI835 (VSI835Q) /CSM/VS/VSI8-B/VSI835Q.Seq.d/                         34   3.1
VSD193 (VSD193Q) /CSM/VS/VSD1-D/VSD193Q.Seq.d/                         34   3.1
VSA204 (VSA204Q) /CSM/VS/VSA2-A/VSA204Q.Seq.d/                         34   3.1
VFI420 (VFI420Q) /CSM/VF/VFI4-A/VFI420Q.Seq.d/                         34   3.1
VFG316 (VFG316Q) /CSM/VF/VFG3-A/VFG316Q.Seq.d/                         34   3.1
VFB190 (VFB190Q) /CSM/VF/VFB1-D/VFB190Q.Seq.d/                         34   3.1

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   545  0.0  3
AC020846|AC020846.2 Mus musculus clone RP21-399J20, WORKING DRAFT SEQUENCE, 14 unordered pieces.    46  0.68  1
AE010645|AE010645.1 Fusobacterium nucleatum subsp. nucleatum ATCC 25586, section 187 of 197 of the complete genome.    36  2.3  2
AC023147|AC023147.3 Homo sapiens chromosome 1 clone RP11-699D18, WORKING DRAFT SEQUENCE, 14 unordered pieces.    42  2.5  3
AL359693|AL359693.11 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-244G12.    44  2.7  1
CC771492|CC771492.1 CH240_7G3.TV CHORI-240 Bos taurus genomic clone CH240_7G3, genomic survey sequence.    44  2.7  1
AY168422|AY168422.1 Homo sapiens MHC class II antigen (HLA-DQB1) gene, HLA-DQB1*0401 allele, intron 2, partial sequence.    36  4.6  3
AJ564982|AJ564982.1 Homo sapiens HLA-DQB1 gene for MHC class II antigen, HLA-DQB1*0302  allele, intron 2.    36  8.2  3
AJ564983|AJ564983.1 Homo sapiens HLA-DQB1 gene for MHC class II antigen, HLA-DQB1*030302 allele, intron 2.    36  8.2  3
AJ564985|AJ564985.1 Homo sapiens HLA-DQB1 gene for MHC class II antigen, HLA-DQB1*0402  allele, intron 2.    36  8.3  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556W1) RecName: Full=D-aspartate oxidase;          Short=DASOX...   194   2e-48
AC116984_140(AC116984|pid:none) Dictyostelium discoideum chromos...   192   1e-47
EU686616_1(EU686616|pid:none) Uncultured marine group II euryarc...    67   5e-10
AM420293_956(AM420293|pid:none) Saccharopolyspora erythraea NRRL...    63   1e-08
AL050350_3(AL050350|pid:none) Human DNA sequence from clone RP1-...    62   3e-08
AX741673_1(AX741673|pid:none) Sequence 20 from Patent WO02066672...    62   3e-08
AK293029_1(AK293029|pid:none) Homo sapiens cDNA FLJ77393 complet...    59   1e-07
AM408590_1947(AM408590|pid:none) Mycobacterium bovis BCG Pasteur...    58   3e-07
AE014134_1231(AE014134|pid:none) Drosophila melanogaster chromos...    58   4e-07
BA000030_1678(BA000030|pid:none) Streptomyces avermitilis MA-468...    57   5e-07

 psg: 0.32  gvh: 0.66  alm: 0.26  top: 0.40  tms: 0.07  mit: 0.30  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: mitochondrial
	 28.0 %: nuclear
	 20.0 %: Golgi
	  8.0 %: cytoplasmic
	  8.0 %: endoplasmic reticulum
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for VFB735 is mit

>VFB735F.Seq
GGCAAAAACACATTAACATTTTTAAAAATAAAAAATATATAAATTTTAAGAATGAATCAA
AATAAAAATAATAATAATAAAAATCCAAAAATTAATTTATTAATTATTGGATGTGGTTGT
ATTGGTTTATCAACAGGTATTATTGCATTAAAGAGTGGTAATTATAAGAGTGTATCAATT
TGGGCCAAAGATTTACCACCAAATACAACCTCAAATAAAGCAGCAGCATTATGGTATCCA
TTTTTATGTAATCCACTAGATTTAGTTGGTAAATGGTCAGCAGAAACCATGCAATATTAT
AAAGATCATATTATTAATGACCCAAAATCAGGTACAATCACAAAGAAAGTAAATGAAATT
TTCAGAC----------

>VFB735Z.Seq
----------TTCCNCGTTTAACAAANNCAGTTTTAGGTGGTACAAATCAAGAACCCGAT
TNCAATACNAATCCAACTAAAAAANATACTNAAGAAATNTTNAAACGTGTAGCCATGATT
TCNCCNCGTTTTGCTAAAAATANAATTGAAATTCAAGGTGTTAAAGTTGGTCTACGTCCT
GCTANACATGAAATTCGTTTANAAAATGAATTCNTTNAAGGTGGTTCAAAATTAGTAGTT
CANAACTATGGTCATGGTGGTAGTGGTTTCNCTGTAAGTTGGGGTTGTGCTATTGAAGCA
ATTAAATTAGTTGATCAAGGCNTACCAAAATTATTACNTTTTAATAAATTAATAAGTNAA
TTATAAAAAAAAAAAAAGTAATATTAAAAAAAAAGTAATAATAAAATAAAAAAAAAGAAA
AGTTTTTTTA

>VFB735P.Seq
GGCAAAAACACATTAACATTTTTAAAAATAAAAAATATATAAATTTTAAGAATGAATCAA
AATAAAAATAATAATAATAAAAATCCAAAAATTAATTTATTAATTATTGGATGTGGTTGT
ATTGGTTTATCAACAGGTATTATTGCATTAAAGAGTGGTAATTATAAGAGTGTATCAATT
TGGGCCAAAGATTTACCACCAAATACAACCTCAAATAAAGCAGCAGCATTATGGTATCCA
TTTTTATGTAATCCACTAGATTTAGTTGGTAAATGGTCAGCAGAAACCATGCAATATTAT
AAAGATCATATTATTAATGACCCAAAATCAGGTACAATCACAAAGAAAGTAAATGAAATT
TTCAGAC----------TTCCNCGTTTAACAAANNCAGTTTTAGGTGGTACAAATCAAGA
ACCCGATTNCAATACNAATCCAACTAAAAAANATACTNAAGAAATNTTNAAACGTGTAGC
CATGATTTCNCCNCGTTTTGCTAAAAATANAATTGAAATTCAAGGTGTTAAAGTTGGTCT
ACGTCCTGCTANACATGAAATTCGTTTANAAAATGAATTCNTTNAAGGTGGTTCAAAATT
AGTAGTTCANAACTATGGTCATGGTGGTAGTGGTTTCNCTGTAAGTTGGGGTTGTGCTAT
TGAAGCAATTAAATTAGTTGATCAAGGCNTACCAAAATTATTACNTTTTAATAAATTAAT
AAGTNAATTATAAAAAAAAAAAAAGTAATATTAAAAAAAAAGTAATAATAAAATAAAAAA
AAAGAAAAGTTTTTTTA