VFB733
Library VF
(Link to library)
Clone ID VFB733
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16279-1
Original site URL
Representative seq. ID VFB733P
(Link to Original site)
Representative DNA sequence
>VFB733 (VFB733Q) /CSM/VF/VFB7-B/VFB733Q.Seq.d/
AATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATTAGA
TGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCAAAA
TAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGCTTT
AACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGATCC
AGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGGAAC
TAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGATAA
AACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGGTAG
AGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACTTGC
AACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGAGAA
TGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATCCATG
TAAGAATGXXXXXXXXXXCTGTAGAGTTGGTCAACGAAGCATTGGCTGAGATTCAACGTC
GTTTCTACATTGACTTCAAACCACATCCAAAAGAAGCCGAATATAAATTCGATTGTTCAT
CAACAATGAAACCAACCTTATGGAAACCAATCGCCGGTAGTTACAATACCATTCCAGGTG
AGTCAACCATTTGTGGTGATATTCGTTTAACTCCATTCTATGATATGAAAGAAATGCGTG
CAAAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCACTGAACTTCGTAATAGAG
GTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAG
TCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACTCTGATG
GTTACAAAGCACTTGGTAAAGCTACTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAA
CTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTGGTTTCGATATTCAAATTA
CTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAATATGCTTTATTATCTGATT
TTAAAAATGCTATTAAAATTTTATCTCGTACAATNATTTATTAGAAAAAAATTAAATTAA
AATCCAATAAAACTCTTTTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
i*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEAL
TPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPADK
TAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEEN
DEIPGIGVDALDHSGKMNPCKN---

---VELVNEALAEIQRRFYIDFKPHPKEAEYKFDCSSTMKPTLWKPIAGSYNTIPGESTI
CGDIRLTPFYDMKEMRAKVEGYIKDINANITELRNRGPYSKYDVPASEGVEPVKGSVSIE
WLGEASAGVACKLDSDGYKALGKATSEILGSLTPVATCGTLPLVRDLQDSGFDIQITGFG
KEETYHADNEYALLSDFKNAIKILSRTXIY*kkiklksnktlf


Translated Amino Acid sequence (All Frames)
Frame A:
nltnfnk*knd*tscfi*ir*kkipyiir*inw*n*kspk*ttsfnsn*r*crssch*sf
nsilkskwwcfrirtssl*ssklskkr*hyy*iprylqrn*ftknnficwftfrcsss**
nclg*ksipiny*r**iiw*ryn*lfrtcciinrfiystcn*ktst*tfnfcsiyck*re
**nsrywcrcirs*wkdesm*e---

---l*swstkhwlrfnvvstltsnhiqkkpninsivhqq*nqpygnqspvvtipfqvsqp
fvvifv*lhsmi*kkcvqklkviskismpislnfvievhtvnmmyqplkvlnqskvqsll
ng*vkhqlvslvnstlmvtkhlvklllkf*vh*lqlqlvvlflwfviskivvsifkllvl
vkkklimlimnmlyylilkmllkfylvqxfirkkln*npiklff

Frame B:
i*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEAL
TPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPADK
TAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEEN
DEIPGIGVDALDHSGKMNPCKN---

---crvgqrsig*dstsflh*lqttskrsri*irlfinnetnlmetnrr*lqyhsr*vnh
lw*ysfnsil*yernacks*rlyqryqcqyh*ts**rsiq*i*ctsl*rc*tsqrfsly*
mvr*siswcrl*trl*wlqstw*syf*nfrfinsscnlwyssfgs*spr*wfrysnywfw
*rrnlsc***icfii*f*kcy*nfisynxllekn*ikiq*nsf

Frame C:
fnkfq*ikk*lnqllhmn*mkkdslhy*vn*lvklkiskidhql*fqlkimqvvmslkl*
lht*kqmvvf*n*nkftviq*tiqkevtlllntqvppkelvhqkqfhllvhi*m*fqlik
llgieihsn*llkvinymvevqliv*dmlhy*qiylfnlqlknqhlniqflqyll*vkrm
mkfqvlvsmh*iiver*ihvrm---

---VELVNEALAEIQRRFYIDFKPHPKEAEYKFDCSSTMKPTLWKPIAGSYNTIPGESTI
CGDIRLTPFYDMKEMRAKVEGYIKDINANITELRNRGPYSKYDVPASEGVEPVKGSVSIE
WLGEASAGVACKLDSDGYKALGKATSEILGSLTPVATCGTLPLVRDLQDSGFDIQITGFG
KEETYHADNEYALLSDFKNAIKILSRTXIY*kkiklksnktlf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB733 (VFB733Q) /CSM/VF/VFB7-B/VFB733Q.Seq.d/ 2391 0.0
VHJ351 (VHJ351Q) /CSM/VH/VHJ3-C/VHJ351Q.Seq.d/ 1267 0.0
VHC429 (VHC429Q) /CSM/VH/VHC4-B/VHC429Q.Seq.d/ 1267 0.0
VFN352 (VFN352Q) /CSM/VF/VFN3-C/VFN352Q.Seq.d/ 1267 0.0
VFJ241 (VFJ241Q) /CSM/VF/VFJ2-B/VFJ241Q.Seq.d/ 1267 0.0
VFI215 (VFI215Q) /CSM/VF/VFI2-A/VFI215Q.Seq.d/ 1267 0.0
VFF872 (VFF872Q) /CSM/VF/VFF8-C/VFF872Q.Seq.d/ 1267 0.0
VFF823 (VFF823Q) /CSM/VF/VFF8-A/VFF823Q.Seq.d/ 1267 0.0
VFF792 (VFF792Q) /CSM/VF/VFF7-D/VFF792Q.Seq.d/ 1267 0.0
VFD285 (VFD285Q) /CSM/VF/VFD2-D/VFD285Q.Seq.d/ 1267 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U23957|U23957.1 Dictyostelium discoideum P52D mRNA, complete cds. 1197 0.0 4
AB036420|AB036420.1 Citrullus lanatus mRNA for DIP-1, complete cds. 40 0.005 2
BZ938047|BZ938047.1 CH240_62J18.TJ CHORI-240 Bos taurus genomic clone CH240_62J18, genomic survey sequence. 42 0.024 2
BG596574|BG596574.1 EST495252 cSTS Solanum tuberosum cDNA clone cSTS15E15 5' sequence, mRNA sequence. 36 0.080 3
AW093338|AW093338.1 EST286518 tomato mixed elicitor, BTI Lycopersicon esculentum cDNA clone cLET24F3, mRNA sequence. 34 0.21 4
BZ781142|BZ781142.1 ii24e02.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor genomic clone ii24e02, DNA sequence. 48 0.28 1
AC145418|AC145418.3 Dasypus novemcinctus clone VMRC5-458M22, WORKING DRAFT SEQUENCE, 2 ordered pieces. 46 1.1 1
AL717293|AL717293.1 Danio rerio embryonic inner ear subtracted cDNA library 5PRIM end of clone BN0AA024ZG01 of Danio rerio. 46 1.1 1
BZ890797|BZ890797.1 CH240_285G7.TJ CHORI-240 Bos taurus genomic clone CH240_285G7, DNA sequence. 46 1.1 1
BX322588|BX322588.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 46 1.1 1
dna update 2003. 9. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54638) RecName: Full=Acetylornithine deacetylase; EC=... 415 e-114
U23957_1(U23957|pid:none) Dictyostelium discoideum P52D mRNA, co... 410 e-113
AB036420_1(AB036420|pid:none) Citrullus lanatus mRNA for DIP-1, ... 216 2e-54
AF360346_1(AF360346|pid:none) Arabidopsis thaliana putative N-ac... 211 6e-53
AL021889_1(AL021889|pid:none) Arabidopsis thaliana DNA chromosom... 211 6e-53
AF170086_1(AF170086|pid:none) Cucurbita pepo silverleaf whitefly... 205 2e-51
FJ899850_1(FJ899850|pid:none) Populus maximowiczii x Populus nig... 194 6e-48
FJ899849_1(FJ899849|pid:none) Populus maximowiczii x Populus nig... 194 6e-48
AK101568_1(AK101568|pid:none) Oryza sativa Japonica Group cDNA c... 191 4e-47
CP001325_366(CP001325|pid:none) Micromonas sp. RCC299 chromosome... 187 5e-46
protein update 2009. 6.17
PSORT

psg: 0.64 gvh: 0.42 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
28.0 %: nuclear
24.0 %: mitochondrial
8.0 %: vesicles of secretory system
4.0 %: cytoskeletal

>> prediction for VFB733 is cyt

5' end seq. ID VFB733F
5' end seq.
>VFB733F.Seq
AATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATTAGA
TGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCAAAA
TAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGCTTT
AACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGATCC
AGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGGAAC
TAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGATAA
AACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGGTAG
AGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACTTGC
AACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGAGAA
TGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATCCATG
TAAGAATG----------
Length of 5' end seq. 608
3' end seq. ID VFB733Z
3' end seq.
>VFB733Z.Seq
----------CTGTAGAGTTGGTCAACGAAGCATTGGCTGAGATTCAACGTCGTTTCTAC
ATTGACTTCAAACCACATCCAAAAGAAGCCGAATATAAATTCGATTGTTCATCAACAATG
AAACCAACCTTATGGAAACCAATCGCCGGTAGTTACAATACCATTCCAGGTGAGTCAACC
ATTTGTGGTGATATTCGTTTAACTCCATTCTATGATATGAAAGAAATGCGTGCAAAAGTT
GAAGGTTATATCAAAGATATCAATGCCAATATCACTGAACTTCGTAATAGAGGTCCATAC
AGTAAATATGATGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTCTCTATT
GAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACTCTGATGGTTACAAA
GCACTTGGTAAAGCTACTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAACTTGTGGT
ACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTGGTTTCGATATTCAAATTACTGGTTTT
GGTAAAGAAGAAACTTATCATGCTGATAATGAATATGCTTTATTATCTGATTTTAAAAAT
GCTATTAAAATTTTATCTCGTACAATNATTTATTAGAAAAAAATTAAATTAAAATCCAAT
AAAACTCTTTTTT
Length of 3' end seq. 663
Connected seq. ID VFB733P
Connected seq.
>VFB733P.Seq
AATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATTAGA
TGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCAAAA
TAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGCTTT
AACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGATCC
AGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGGAAC
TAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGATAA
AACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGGTAG
AGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACTTGC
AACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGAGAA
TGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATCCATG
TAAGAATG----------CTGTAGAGTTGGTCAACGAAGCATTGGCTGAGATTCAACGTC
GTTTCTACATTGACTTCAAACCACATCCAAAAGAAGCCGAATATAAATTCGATTGTTCAT
CAACAATGAAACCAACCTTATGGAAACCAATCGCCGGTAGTTACAATACCATTCCAGGTG
AGTCAACCATTTGTGGTGATATTCGTTTAACTCCATTCTATGATATGAAAGAAATGCGTG
CAAAAGTTGAAGGTTATATCAAAGATATCAATGCCAATATCACTGAACTTCGTAATAGAG
GTCCATACAGTAAATATGATGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAG
TCTCTATTGAATGGTTAGGTGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACTCTGATG
GTTACAAAGCACTTGGTAAAGCTACTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAA
CTTGTGGTACTCTTCCTTTGGTTCGTGATCTCCAAGATAGTGGTTTCGATATTCAAATTA
CTGGTTTTGGTAAAGAAGAAACTTATCATGCTGATAATGAATATGCTTTATTATCTGATT
TTAAAAATGCTATTAAAATTTTATCTCGTACAATNATTTATTAGAAAAAAATTAAATTAA
AATCCAATAAAACTCTTTTTT
Length of connected seq. 1271
Full length Seq ID -
Full length Seq. -
Length of full length seq. -