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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB702
Library VF
(Link to library)
Clone ID VFB702
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12284-1
Original site URL
Representative seq. ID VFB702P
(Link to Original site)
Representative DNA sequence 
>VFB702 (VFB702Q) /CSM/VF/VFB7-A/VFB702Q.Seq.d/
CACTGTTGGCCTACTGGATTTTTTATTTTATTATTTTTATTTATTTAACTAACTTGTAAT
TTCATAGTAATATTAACAGCAGCAAGTTCAGCAACTAAATAAGTGAAAACGTAAGGAATT
GAAATTGTAGCGATTGAATCACTGGATTTACAAGATTTACATTCAGAAACAGTTTGATTG
GAATAATCTTTTTTAGAGTAGATTGTGAGGGTACTACCACATAATTTACAAACTTTAATC
TTTGCGAAATCAGAGGATTTCATGAGACGATCATTCAAACAGAAACTAGCACCATGAGCC
AAAAGGGAATCACGTTCCATCTCACCGAAACGAATACCACCACCAACCTTACGACCTTTA
ATTGGNTGACGAGTTAAAGCATTAACTTTACCGAGAGCACGTACTTGATATTTATCTTTA
ACCATATGACGTAATCTTTGATAGNAACAAACACCGAAAAAGATTTCACATTCNAATTXX
XXXXXXXXAACAATGAAAACATAGCAGTTGGTGAAGTTTCAATATGAGTTGTAACACCTT
TGATAACTTCATGTGGTACAACAGCAATCTCCATATATAGTTGTTCTTGTGGTCCAATCA
ATTCATTTTGACCACTTGTCAAATTGACTACTGGTCTCATGAAACGTGCACCAGTTGTAA
ACAATGAAATGCCTGAATATTGACCATTTTCAACGTTGGTTGGTGGTGCATATGAAATTT
CCATGGTTTTTGGAATTGATGGTTCATTACCCATTGAACGAAGATAACGTAACATTTTAA
CCATCTCTTCACCTGCTTTTGGTTCAATCTTACCCAATACACGACCATCCAATGTAATAG
TGAGATATTGATGTTGATAAACACTAACCATATCAATTGGTAACATACCATGTGCTGCTA
AAAATGATGGTAATAATGTTTGTGCCTTTTGAACAGTTGGATCTTGTGCTGCATCAACTG
TAACCAAACAATTTGATGATAAATGATTCAATAAACCACATGGTGCACCATCTGGTGTAT
GTACTGGACAGAAAAAGCCCCAACTTTCTGGCATCAACTTTCTAATTGCTGTAGTTTTCA
TTGTTGCAAAAAATGCACCTCTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
tvglldflfyyfylfn*lvis**y*qqqvqqlnk*krkelkl*rlnhwiykiyiqkqfdw
nnlf*srl*gyyhiiykl*slrnqris*ddhsnrn*hhepkgnhvpshrneyhhqpydl*
lxdelkh*lyrehvldiyl*PYDVIFDXNKHRKRFHIXI---

---NNENIAVGEVSI*vvtplitscgttaisiyscscgpinsf*plvklttglmkrapvv
nnempey*pfstlvggayeismvfgidgslpierr*rniltisspafgsilpntrpsnvi
vry*c**tltisignipcaakndgnnvcaf*tvgscaastvtkqfddk*fnkphgapsgv
ctgqkkpqlsginfliavvfivaknapl
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgffillflfi*ltcnfiviltaassatk*vkt*gieivaiesldlqdlhsetv*l
e*sfle*ivrvlphnlqtlifaksedfmrrsfkqklap*akresrsispkrippptlrpl
ig*rvkaltlprart*ylslti*rnl**xqtpkkishsn---

---NNENIAVGEVSI*vvtplitscgttaisiyscscgpinsf*plvklttglmkrapvv
nnempey*pfstlvggayeismvfgidgslpierr*rniltisspafgsilpntrpsnvi
vry*c**tltisignipcaakndgnnvcaf*tvgscaastvtkqfddk*fnkphgapsgv
ctgqkkpqlsginfliavvfivaknapl

Frame B:
tvglldflfyyfylfn*lvis**y*qqqvqqlnk*krkelkl*rlnhwiykiyiqkqfdw
nnlf*srl*gyyhiiykl*slrnqris*ddhsnrn*hhepkgnhvpshrneyhhqpydl*
lxdelkh*lyrehvldiyl*PYDVIFDXNKHRKRFHIXI---

---tmkt*qlvkfqyel*hl**lhvvqqqspyivvlvvqsihfdhlsn*llvs*nvhql*
tmkclnidhfqrwlvvhmkfpwflelmvhyplnednvtf*pslhlllvqsypihdhpm**
*didvdkh*pyqlvtyhvllkmmvimfvpfeqldlvlhql*pnnlmindsinhmvhhlvy
vldrkspnflastf*ll*fsllqkmhl

Frame C:
llaywifyfiifiyltnl*fhsninsskfsn*isenvrn*ncsd*itgftrftfrnslig
iiffrvdcegttt*ftnfnlceirgfhetiiqtetstmsqkgitfhltetntttnlttfn
wxts*sinftestylififnhmt*slixtntekdftfx---

---q*khssw*sfnmscntfdnfmwynsnlhi*lflwsnqfilttcqidywshetctsck
q*na*iltifnvgwwci*nfhgfwn*wfith*tkit*hfnhlftcfwfnltqyttiqcns
eilmlintnhinw*htmcc*k*w**clcllnswilccincnqti***miq*ttwctiwcm
ywtekaptfwhqlsnccsfhcckkcts
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB702 (VFB702Q) /CSM/VF/VFB7-A/VFB702Q.Seq.d/                       2016   0.0
VHA453 (VHA453Q) /CSM/VH/VHA4-C/VHA453Q.Seq.d/                        815   0.0
VHF608 (VHF608Q) /CSM/VH/VHF6-A/VHF608Q.Seq.d/                         44   0.005
VHJ205 (VHJ205Q) /CSM/VH/VHJ2-A/VHJ205Q.Seq.d/                         40   0.071
CHR820 (CHR820Q) /CSM/CH/CHR8-A/CHR820Q.Seq.d/                         40   0.071
SSC653 (SSC653Q) /CSM/SS/SSC6-C/SSC653Q.Seq.d/                         38   0.28
SFK796 (SFK796Q) /CSM/SF/SFK7-D/SFK796Q.Seq.d/                         38   0.28
SFK450 (SFK450Q) /CSM/SF/SFK4-C/SFK450Q.Seq.d/                         38   0.28
SFI439 (SFI439Q) /CSM/SF/SFI4-B/SFI439Q.Seq.d/                         38   0.28
SFH719 (SFH719Q) /CSM/SF/SFH7-A/SFH719Q.Seq.d/                         38   0.28
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

G65021|G65021.1 DH0281 Dictyostelium discoideum ( P.Dear ) Dictyostelium discoideum STS genomic 5', sequence tagged site.   829  0.0  1
AZ690834|AZ690834.1 ENTKB47TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    76  5e-15  2
BH152742|BH152742.1 ENTQF66TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    76  5e-15  2
AZ674048|AZ674048.1 ENTMG33TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    76  6e-15  2
AZ681367|AZ681367.1 ENTKQ40TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    76  6e-15  2
AZ681906|AZ681906.1 ENTLH74TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    76  1e-09  1
M62804|M62804.1 S.cerevisiae RNA polymerase I second-largest subunit (RPA135) gene, complete cds.    42  3e-08  3
Z49919|Z49919.1 S.cerevisiae chromosome XVI cosmid 9531.          42  6e-07  3
U31900|U31900.1 Saccharomyces cerevisiae chromosome XVI cosmid 9723/71015.    42  1e-06  4
AL136535|AL136535.1 S.pombe chromosome II p1 p23A10.              60  1e-04  2
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM270222_64(AM270222|pid:none) Aspergillus niger contig An11c005...   180   9e-44
CR382122_255(CR382122|pid:none) Kluyveromyces lactis strain NRRL...   179   2e-43
AE017346_399(AE017346|pid:none) Cryptococcus neoformans var. neo...   179   2e-43
CU928171_723(CU928171|pid:none) Kluyveromyces thermotolerans str...   172   1e-41
(P22138) RecName: Full=DNA-directed RNA polymerase I subunit RPA...   172   1e-41
FM992694_9(FM992694|pid:none) Candida dubliniensis CD36 chromoso...   171   4e-41
AP006852_55(AP006852|pid:none) Candida albicans genomic DNA, chr...   170   7e-41
(Q9P7X8) RecName: Full=Probable DNA-directed RNA polymerase I su...   169   1e-40
AM920437_786(AM920437|pid:none) Penicillium chrysogenum Wisconsi...   167   5e-40
CU928181_108(CU928181|pid:none) Zygosaccharomyces rouxii strain ...   165   2e-39
protein update 2009. 6.17
PSORT 

 psg: 0.75  gvh: 0.19  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.05  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: Golgi

>> prediction for VFB702 is nuc
5' end seq. ID VFB702F
5' end seq. 
>VFB702F.Seq
CACTGTTGGCCTACTGGATTTTTTATTTTATTATTTTTATTTATTTAACTAACTTGTAAT
TTCATAGTAATATTAACAGCAGCAAGTTCAGCAACTAAATAAGTGAAAACGTAAGGAATT
GAAATTGTAGCGATTGAATCACTGGATTTACAAGATTTACATTCAGAAACAGTTTGATTG
GAATAATCTTTTTTAGAGTAGATTGTGAGGGTACTACCACATAATTTACAAACTTTAATC
TTTGCGAAATCAGAGGATTTCATGAGACGATCATTCAAACAGAAACTAGCACCATGAGCC
AAAAGGGAATCACGTTCCATCTCACCGAAACGAATACCACCACCAACCTTACGACCTTTA
ATTGGNTGACGAGTTAAAGCATTAACTTTACCGAGAGCACGTACTTGATATTTATCTTTA
ACCATATGACGTAATCTTTGATAGNAACAAACACCGAAAAAGATTTCACATTCNAATT--
--------
Length of 5' end seq. 478
3' end seq. ID VFB702Z
3' end seq. 
>VFB702Z.Seq
----------AACAATGAAAACATAGCAGTTGGTGAAGTTTCAATATGAGTTGTAACACC
TTTGATAACTTCATGTGGTACAACAGCAATCTCCATATATAGTTGTTCTTGTGGTCCAAT
CAATTCATTTTGACCACTTGTCAAATTGACTACTGGTCTCATGAAACGTGCACCAGTTGT
AAACAATGAAATGCCTGAATATTGACCATTTTCAACGTTGGTTGGTGGTGCATATGAAAT
TTCCATGGTTTTTGGAATTGATGGTTCATTACCCATTGAACGAAGATAACGTAACATTTT
AACCATCTCTTCACCTGCTTTTGGTTCAATCTTACCCAATACACGACCATCCAATGTAAT
AGTGAGATATTGATGTTGATAAACACTAACCATATCAATTGGTAACATACCATGTGCTGC
TAAAAATGATGGTAATAATGTTTGTGCCTTTTGAACAGTTGGATCTTGTGCTGCATCAAC
TGTAACCAAACAATTTGATGATAAATGATTCAATAAACCACATGGTGCACCATCTGGTGT
ATGTACTGGACAGAAAAAGCCCCAACTTTCTGGCATCAACTTTCTAATTGCTGTAGTTTT
CATTGTTGCAAAAAATGCACCTCTA
Length of 3' end seq. 615
Connected seq. ID VFB702P
Connected seq. 
>VFB702P.Seq
CACTGTTGGCCTACTGGATTTTTTATTTTATTATTTTTATTTATTTAACTAACTTGTAAT
TTCATAGTAATATTAACAGCAGCAAGTTCAGCAACTAAATAAGTGAAAACGTAAGGAATT
GAAATTGTAGCGATTGAATCACTGGATTTACAAGATTTACATTCAGAAACAGTTTGATTG
GAATAATCTTTTTTAGAGTAGATTGTGAGGGTACTACCACATAATTTACAAACTTTAATC
TTTGCGAAATCAGAGGATTTCATGAGACGATCATTCAAACAGAAACTAGCACCATGAGCC
AAAAGGGAATCACGTTCCATCTCACCGAAACGAATACCACCACCAACCTTACGACCTTTA
ATTGGNTGACGAGTTAAAGCATTAACTTTACCGAGAGCACGTACTTGATATTTATCTTTA
ACCATATGACGTAATCTTTGATAGNAACAAACACCGAAAAAGATTTCACATTCNAATT--
--------AACAATGAAAACATAGCAGTTGGTGAAGTTTCAATATGAGTTGTAACACCTT
TGATAACTTCATGTGGTACAACAGCAATCTCCATATATAGTTGTTCTTGTGGTCCAATCA
ATTCATTTTGACCACTTGTCAAATTGACTACTGGTCTCATGAAACGTGCACCAGTTGTAA
ACAATGAAATGCCTGAATATTGACCATTTTCAACGTTGGTTGGTGGTGCATATGAAATTT
CCATGGTTTTTGGAATTGATGGTTCATTACCCATTGAACGAAGATAACGTAACATTTTAA
CCATCTCTTCACCTGCTTTTGGTTCAATCTTACCCAATACACGACCATCCAATGTAATAG
TGAGATATTGATGTTGATAAACACTAACCATATCAATTGGTAACATACCATGTGCTGCTA
AAAATGATGGTAATAATGTTTGTGCCTTTTGAACAGTTGGATCTTGTGCTGCATCAACTG
TAACCAAACAATTTGATGATAAATGATTCAATAAACCACATGGTGCACCATCTGGTGTAT
GTACTGGACAGAAAAAGCCCCAACTTTCTGGCATCAACTTTCTAATTGCTGTAGTTTTCA
TTGTTGCAAAAAATGCACCTCTA
Length of connected seq. 1093
Full length Seq ID -
Full length Seq. -
Length of full length seq. -