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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB692
Library VF
(Link to library)
Clone ID VFB692
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16279-1
Original site URL
Representative seq. ID VFB692P
(Link to Original site)
Representative DNA sequence 
>VFB692 (VFB692Q) /CSM/VF/VFB6-D/VFB692Q.Seq.d/
AATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATTAGA
TGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCAAAA
TAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGCTTT
AACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGATCC
AGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGGAAC
TAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGATAA
AACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGGTAG
AGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACTTGC
AACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGAGAA
TGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAATXXXXX
XXXXXGTCAACGAAGCATTGGCTGAGATTCAACGTCGTTTCTACATTGACTTCAAACCAC
ATCCAAAAGAAGCCGAATATAAATTCGATTGTTCATCAACAATGAAACCAACCTTATGGA
AACCAATCGCCGGTAGTTACAATACCATTCCAGGTGAGTCAACCATTTGTGGTGATATTC
GTTTAACTCCATTCTATGATATGAAAGAAATGCGTGCAAAAGTTGAAGGTTATATCAAAG
ATATCAATGCCAATATCACTGAACTTCGTAATAGAGGTCCATACAGTAAATATGATGTAC
CAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTCTCTATTGAATGGTTAGGTGAAG
CATCAGCTGGTGTCGCTTGTAAACTCGACTCTGATGGTTACAAAGCACTTGGTAAAGCTA
CTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAACTTGTGGTACTCTTCCTTTGGTTC
GTGATCTCCAAGGTAGTGGTTTCGATATTCAAATTACTGGTTTTGGTAAAGAAGAAACTT
ATCATGCTGATAATGAATATGCTTTATTATCNATTTTAAAAATGCTATTAAAATTTTATC
TCGTACAATNATTTATTAGAAAAAAATTAAATTAAAATCCAATAAAACTCTTTTTTTATA
A
sequence update 2001. 6. 1
Translated Amino Acid sequence 
i*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEAL
TPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPADK
TAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEEN
DEIPGIGVDALDHSGKMN---

---VNEALAEIQRRFYIDFKPHPKEAEYKFDCSSTMKPTLWKPIAGSYNTIPGESTICGD
IRLTPFYDMKEMRAKVEGYIKDINANITELRNRGPYSKYDVPASEGVEPVKGSVSIEWLG
EASAGVACKLDSDGYKALGKATSEILGSLTPVATCGTLPLVRDLQGSGFDIQITGFGKEE
TYHADNEYALLSILKMLLKFYLVQXFIRKKLN*npiklffy
Translated Amino Acid sequence (All Frames) 
Frame A:
nltnfnk*knd*tscfi*ir*kkipyiir*inw*n*kspk*ttsfnsn*r*crssch*sf
nsilkskwwcfrirtssl*ssklskkr*hyy*iprylqrn*ftknnficwftfrcsss**
nclg*ksipiny*r**iiw*ryn*lfrtcciinrfiystcn*ktst*tfnfcsiyck*re
**nsrywcrcirs*wkde---

---VNEALAEIQRRFYIDFKPHPKEAEYKFDCSSTMKPTLWKPIAGSYNTIPGESTICGD
IRLTPFYDMKEMRAKVEGYIKDINANITELRNRGPYSKYDVPASEGVEPVKGSVSIEWLG
EASAGVACKLDSDGYKALGKATSEILGSLTPVATCGTLPLVRDLQGSGFDIQITGFGKEE
TYHADNEYALLSILKMLLKFYLVQXFIRKKLN*npiklffy

Frame B:
i*QISINKKMTKPVASYELDEKRFLTLLGKLIGETENLQNRPPALIPIEDNAGRHVIEAL
TPYLKANGGVLELEQVHCDPVNYPKRGNIIIEYPGTSKGTSSPKTISFVGSHLDVVPADK
TAWDRNPFQLIIEGDKLYGRGTTDCLGHVALLTDLFIQLATEKPALKHSIFAVFIVSEEN
DEIPGIGVDALDHSGKMN---

---stkhwlrfnvvstltsnhiqkkpninsivhqq*nqpygnqspvvtipfqvsqpfvvi
fv*lhsmi*kkcvqklkviskismpislnfvievhtvnmmyqplkvlnqskvqsllng*v
khqlvslvnstlmvtkhlvklllkf*vh*lqlqlvvlflwfviskvvvsifkllvlvkkk
limlimnmlyyxf*kcy*nfisynxllekn*ikiq*nsffi

Frame C:
fnkfq*ikk*lnqllhmn*mkkdslhy*vn*lvklkiskidhql*fqlkimqvvmslkl*
lht*kqmvvf*n*nkftviq*tiqkevtlllntqvppkelvhqkqfhllvhi*m*fqlik
llgieihsn*llkvinymvevqliv*dmlhy*qiylfnlqlknqhlniqflqyll*vkrm
mkfqvlvsmh*iiver*---

---qrsig*dstsflh*lqttskrsri*irlfinnetnlmetnrr*lqyhsr*vnhlw*y
sfnsil*yernacks*rlyqryqcqyh*ts**rsiq*i*ctsl*rc*tsqrfsly*mvr*
siswcrl*trl*wlqstw*syf*nfrfinsscnlwyssfgs*spr*wfrysnywfw*rrn
lsc***icfiixfknaikilsrtxiy*kkiklksnktlfl*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB692 (VFB692Q) /CSM/VF/VFB6-D/VFB692Q.Seq.d/                       2323   0.0
VFA581 (VFA581Q) /CSM/VF/VFA5-D/VFA581Q.Seq.d/                       2258   0.0
VFB596 (VFB596Q) /CSM/VF/VFB5-D/VFB596Q.Seq.d/                       1215   0.0
VHJ351 (VHJ351Q) /CSM/VH/VHJ3-C/VHJ351Q.Seq.d/                       1203   0.0
VHC429 (VHC429Q) /CSM/VH/VHC4-B/VHC429Q.Seq.d/                       1203   0.0
VFN352 (VFN352Q) /CSM/VF/VFN3-C/VFN352Q.Seq.d/                       1203   0.0
VFK332 (VFK332Q) /CSM/VF/VFK3-B/VFK332Q.Seq.d/                       1203   0.0
VFJ855 (VFJ855Q) /CSM/VF/VFJ8-C/VFJ855Q.Seq.d/                       1203   0.0
VFJ657 (VFJ657Q) /CSM/VF/VFJ6-C/VFJ657Q.Seq.d/                       1203   0.0
VFJ241 (VFJ241Q) /CSM/VF/VFJ2-B/VFJ241Q.Seq.d/                       1203   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U23957|U23957.1 Dictyostelium discoideum P52D mRNA, complete cds.  1098  0.0  5
AB036420|AB036420.1 Citrullus lanatus mRNA for DIP-1, complete cds.    40  0.005  2
BZ938047|BZ938047.1 CH240_62J18.TJ CHORI-240 Bos taurus genomic clone CH240_62J18, genomic survey sequence.    42  0.024  2
BG596574|BG596574.1 EST495252 cSTS Solanum tuberosum cDNA clone cSTS15E15 5' sequence, mRNA sequence.    36  0.076  3
AW093338|AW093338.1 EST286518 tomato mixed elicitor, BTI Lycopersicon esculentum cDNA clone cLET24F3, mRNA sequence.    34  0.20  4
AC145418|AC145418.3 Dasypus novemcinctus clone VMRC5-458M22, WORKING DRAFT SEQUENCE, 2 ordered pieces.    46  1.1  1
AL717293|AL717293.1 Danio rerio embryonic inner ear subtracted cDNA library 5PRIM end of clone BN0AA024ZG01 of Danio rerio.    46  1.1  1
BZ890797|BZ890797.1 CH240_285G7.TJ CHORI-240 Bos taurus genomic clone CH240_285G7, DNA sequence.    46  1.1  1
AC141854|AC141854.2 Bos taurus clone RP42-429D15, WORKING DRAFT SEQUENCE, 9 ordered pieces.    46  1.5  2
AP003191|AP003191.2 Clostridium perfringens DNA, complete genome, section 7/10.    34  3.3  7
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54638) RecName: Full=Acetylornithine deacetylase;          EC=...   387   e-107
U23957_1(U23957|pid:none) Dictyostelium discoideum P52D mRNA, co...   383   e-105
CP000113_250(CP000113|pid:none) Myxococcus xanthus DK 1622, comp...   123   3e-56
AB036420_1(AB036420|pid:none) Citrullus lanatus mRNA for DIP-1, ...   203   9e-51
AF360346_1(AF360346|pid:none) Arabidopsis thaliana putative N-ac...   202   3e-50
AL021889_1(AL021889|pid:none) Arabidopsis thaliana DNA chromosom...   202   3e-50
AF170086_1(AF170086|pid:none) Cucurbita pepo silverleaf whitefly...   193   9e-48
FJ899850_1(FJ899850|pid:none) Populus maximowiczii x Populus nig...   187   9e-46
FJ899849_1(FJ899849|pid:none) Populus maximowiczii x Populus nig...   187   9e-46
AK101568_1(AK101568|pid:none) Oryza sativa Japonica Group cDNA c...   184   8e-45
protein update 2009. 6.17
PSORT 

 psg: 0.64  gvh: 0.42  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for VFB692 is cyt
5' end seq. ID VFB692F
5' end seq. 
>VFB692F.Seq
AATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATTAGA
TGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCAAAA
TAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGCTTT
AACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGATCC
AGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGGAAC
TAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGATAA
AACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGGTAG
AGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACTTGC
AACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGAGAA
TGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAAT-----
-----
Length of 5' end seq. 595
3' end seq. ID VFB692Z
3' end seq. 
>VFB692Z.Seq
----------GTCAACGAAGCATTGGCTGAGATTCAACGTCGTTTCTACATTGACTTCAA
ACCACATCCAAAAGAAGCCGAATATAAATTCGATTGTTCATCAACAATGAAACCAACCTT
ATGGAAACCAATCGCCGGTAGTTACAATACCATTCCAGGTGAGTCAACCATTTGTGGTGA
TATTCGTTTAACTCCATTCTATGATATGAAAGAAATGCGTGCAAAAGTTGAAGGTTATAT
CAAAGATATCAATGCCAATATCACTGAACTTCGTAATAGAGGTCCATACAGTAAATATGA
TGTACCAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTCTCTATTGAATGGTTAGG
TGAAGCATCAGCTGGTGTCGCTTGTAAACTCGACTCTGATGGTTACAAAGCACTTGGTAA
AGCTACTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAACTTGTGGTACTCTTCCTTT
GGTTCGTGATCTCCAAGGTAGTGGTTTCGATATTCAAATTACTGGTTTTGGTAAAGAAGA
AACTTATCATGCTGATAATGAATATGCTTTATTATCNATTTTAAAAATGCTATTAAAATT
TTATCTCGTACAATNATTTATTAGAAAAAAATTAAATTAAAATCCAATAAAACTCTTTTT
TTATAA
Length of 3' end seq. 656
Connected seq. ID VFB692P
Connected seq. 
>VFB692P.Seq
AATTTAACAAATTTCAATAAATAAAAAAATGACTAAACCAGTTGCTTCATATGAATTAGA
TGAAAAAAGATTCCTTACATTATTAGGTAAATTAATTGGTGAAACTGAAAATCTCCAAAA
TAGACCACCAGCTTTAATTCCAATTGAAGATAATGCAGGTCGTCATGTCATTGAAGCTTT
AACTCCATACTTAAAAGCAAATGGTGGTGTTTTAGAATTAGAACAAGTTCACTGTGATCC
AGTAAACTATCCAAAAAGAGGTAACATTATTATTGAATACCCAGGTACCTCCAAAGGAAC
TAGTTCACCAAAAACAATTTCATTTGTTGGTTCACATTTAGATGTAGTTCCAGCTGATAA
AACTGCTTGGGATAGAAATCCATTCCAATTAATTATTGAAGGTGATAAATTATATGGTAG
AGGTACAACTGATTGTTTAGGACATGTTGCATTATTAACAGATTTATTTATTCAACTTGC
AACTGAAAAACCAGCACTTAAACATTCAATTTTTGCAGTATTTATTGTAAGTGAAGAGAA
TGATGAAATTCCAGGTATTGGTGTCGATGCATTAGATCATAGTGGAAAGATGAAT-----
-----GTCAACGAAGCATTGGCTGAGATTCAACGTCGTTTCTACATTGACTTCAAACCAC
ATCCAAAAGAAGCCGAATATAAATTCGATTGTTCATCAACAATGAAACCAACCTTATGGA
AACCAATCGCCGGTAGTTACAATACCATTCCAGGTGAGTCAACCATTTGTGGTGATATTC
GTTTAACTCCATTCTATGATATGAAAGAAATGCGTGCAAAAGTTGAAGGTTATATCAAAG
ATATCAATGCCAATATCACTGAACTTCGTAATAGAGGTCCATACAGTAAATATGATGTAC
CAGCCTCTGAAGGTGTTGAACCAGTCAAAGGTTCAGTCTCTATTGAATGGTTAGGTGAAG
CATCAGCTGGTGTCGCTTGTAAACTCGACTCTGATGGTTACAAAGCACTTGGTAAAGCTA
CTTCTGAAATTTTAGGTTCATTAACTCCAGTTGCAACTTGTGGTACTCTTCCTTTGGTTC
GTGATCTCCAAGGTAGTGGTTTCGATATTCAAATTACTGGTTTTGGTAAAGAAGAAACTT
ATCATGCTGATAATGAATATGCTTTATTATCNATTTTAAAAATGCTATTAAAATTTTATC
TCGTACAATNATTTATTAGAAAAAAATTAAATTAAAATCCAATAAAACTCTTTTTTTATA
A
Length of connected seq. 1251
Full length Seq ID -
Full length Seq. -
Length of full length seq. -