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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB689
Library VF
(Link to library)
Clone ID VFB689
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16603-1
Original site URL
Representative seq. ID VFB689P
(Link to Original site)
Representative DNA sequence 
>VFB689 (VFB689Q) /CSM/VF/VFB6-D/VFB689Q.Seq.d/
ATTTTTTTTTTTAAATTCTGNCATTACANGCATTGAAAAAAATGAACAAATCAATTTTAT
TATTAGTTTTAGTAATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTNTTCAATG
TTCGTNCTGATTTAAAAAATCAATTAAAATTTANACATTTTGATGATAGTTTANATTATG
ATGCAATCAATTATCAATGGTTCACTCAAAGNGTTGATCATTTTAATCCAGCAAACCCAA
CAACTTTCCAACAAAGATNTTTAATTAATGACCAATATTGGGATGGTNCAGGTCCAGTTT
TTATCATGATTAATGGNGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTG
TTGTTTGGGCTAAACAAGTTAGNGCACTTGTTGTTTCTNTTGAACATCGTTATTATGGNG
CTAGTTTTGTAACTGAAGACCTTTCACTTGAAAATTTACAATGGTTAAATTCAGCAXXXX
XXXXXXTATGGTGGTGTTGATCAAATGTTTAACCTTTGTACACCACTTGGTAATCAAAAT
GATGTTGCCACTTTTATGCAATCACTTGCAGGTAATTTCATGGGTGTAGTTCAATATAAC
GATGAAGAACCAGGTCAAATCGATATCGATTACCTTTGCAATATCATGACTAATCAATCA
TCAGATCCATTGACAAACTATATCCAAATTTGGGATCAATATGCTGATGGTGAATGTGTT
GATGTTTCATATGCTTCAATGATCGCTCAAAATCAAAATGTTACCAATGATGAAAATGCC
ATTGGTGGTAGAATGTGGTTCTATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGT
GATGCTCCATCTGCAAATCAACCATTTGGTAATTTATTCCCATTCCAACCATATCAAATT
CAACAATGTGCCGATAGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATC
ACTGAATATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAAT
GGTTCAAATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAAT
ACTTTATACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCA
CCTCCAACT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fff*ILXLXALKKMNKSILLLVLVIVSIIGSIDSKKVFNVRXDLKNQLKFXHFDDSLXYD
AINYQWFTQXVDHFNPANPTTFQQRXLINDQYWDGXGPVFIMINGEGPMDINTVTQLQFV
VWAKQVXALVVSXEHRYYGASFVTEDLSLENLQWLNSA---

---YGGVDQMFNLCTPLGNQNDVATFMQSLAGNFMGVVQYNDEEPGQIDIDYLCNIMTNQ
SSDPLTNYIQIWDQYADGECVDVSYASMIAQNQNVTNDENAIGGRMWFYQTCVEFGYYQS
SDAPSANQPFGNLFPFQPYQIQQCADSFGIPNMYPNVNWTITEYGGINPEPSSVDNTLYV
NGSNDEWHNLAILPGNANAKNTLYIIGTSHCADMMIPTSVSPPT
Translated Amino Acid sequence (All Frames) 
Frame A:
ifffkfxhyxh*kk*tnqfyy*f**lyqllvqltqrkxsmfvli*kin*nlxilmivxim
mqsiingslkxliiliqqtqqlsnkdx*lmtnigmvqvqfls*lmxkvqwilil*pnfnl
lfglnklxhllfllnivimxlvl*lktfhlkiyng*iq---

---YGGVDQMFNLCTPLGNQNDVATFMQSLAGNFMGVVQYNDEEPGQIDIDYLCNIMTNQ
SSDPLTNYIQIWDQYADGECVDVSYASMIAQNQNVTNDENAIGGRMWFYQTCVEFGYYQS
SDAPSANQPFGNLFPFQPYQIQQCADSFGIPNMYPNVNWTITEYGGINPEPSSVDNTLYV
NGSNDEWHNLAILPGNANAKNTLYIIGTSHCADMMIPTSVSPPT

Frame B:
ffflnsxitxiekneqinfiisfsncinywfn*lkesxqcsx*fkksikixtf***fxl*
cnqlsmvhskx*sf*sskpnnfptkxfn**pilgwxrssfyhd*wxrsngy*ycnptsic
clg*ts*xtccfx*tsllwx*fcn*rpft*kftmvkfs---

---mvvlikcltfvhhlvikmmlpllcnhlqviswv*fnitmknqvksisitfais*lin
hqih*qtiskfginmlmvnvlmfhmlq*slkikmlpmmkmplvvecgsiklvlnlviinq
vmlhlqinhlviyshsnhikfnnvpivlvfqiciqtligqslnmvvliqnhplliipym*
mvqmmngtilqsyqvmqmlkilytllvqvivli**fqlqyhlq

Frame C:
fff*ILXLXALKKMNKSILLLVLVIVSIIGSIDSKKVFNVRXDLKNQLKFXHFDDSLXYD
AINYQWFTQXVDHFNPANPTTFQQRXLINDQYWDGXGPVFIMINGEGPMDINTVTQLQFV
VWAKQVXALVVSXEHRYYGASFVTEDLSLENLQWLNSA---

---wwc*snv*plyttw*sk*cchfyaitcr*fhgcssi*r*rtrsnryrlplqyhd*si
irsidklypnlgsic*w*mc*cficfndrskskcyq**kchww*nvvlsnlc*iwllsik
*csickstiw*fipiptisnstmcr*fwyskyvskr*ldnh*iwwy*srtilc**ylick
wfk**maqscnltr*ckc*kyfihywykslc*yddsnfsitsn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHC486 (VHC486Q) /CSM/VH/VHC4-D/VHC486Q.Seq.d/                       1314   0.0
VFN372 (VFN372Q) /CSM/VF/VFN3-C/VFN372Q.Seq.d/                       1314   0.0
VFN349 (VFN349Q) /CSM/VF/VFN3-C/VFN349Q.Seq.d/                       1314   0.0
VFM632 (VFM632Q) /CSM/VF/VFM6-B/VFM632Q.Seq.d/                       1314   0.0
VFK549 (VFK549Q) /CSM/VF/VFK5-C/VFK549Q.Seq.d/                       1314   0.0
VFJ392 (VFJ392Q) /CSM/VF/VFJ3-D/VFJ392Q.Seq.d/                       1314   0.0
VFJ161 (VFJ161Q) /CSM/VF/VFJ1-C/VFJ161Q.Seq.d/                       1314   0.0
VFH887 (VFH887Q) /CSM/VF/VFH8-D/VFH887Q.Seq.d/                       1314   0.0
VFG878 (VFG878Q) /CSM/VF/VFG8-D/VFG878Q.Seq.d/                       1314   0.0
VFF646 (VFF646Q) /CSM/VF/VFF6-B/VFF646Q.Seq.d/                       1314   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BH974809|BH974809.1 odf99g08.g1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    34  0.057  3
BH471084|BH471084.1 BOHMF69TR BOHM Brassica oleracea genomic clone BOHMF69, DNA sequence.    34  0.073  3
AE004376|AE004376.1 Vibrio cholerae chromosome II, section 33 of 93 of the complete chromosome.    38  0.54  3
AP004475|AP004475.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjT01I13, TM0010.    44  0.57  4
AC084578|AC084578.1 Caenorhabditis briggsae cosmid G39O07, complete sequence.    40  0.74  2
AL928977|AL928977.10 Zebrafish DNA sequence from clone DKEY-24D19 in linkage group 20.    42  0.92  5
AC026874|AC026874.4 Homo sapiens chromosome 1 clone RP11-627E4, WORKING DRAFT SEQUENCE, 32 unordered pieces.    46  0.98  1
AI900122|AI900122.1 sc01b07.y1 Gm-c1012 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1012-878 5', mRNA sequence.    46  0.98  1
BM520804|BM520804.1 sal30g03.y1 Gm-c1059 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1059-3773 5', mRNA sequence.    46  0.98  1
AW705505|AW705505.1 sk49h12.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-5952 5', mRNA sequence.    46  0.98  1
dna update 2003. 9. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos...   145   3e-33
BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495...   120   9e-26
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei...   117   6e-25
BC161646_1(BC161646|pid:none) Xenopus tropicalis hypothetical pr...   116   2e-24
(Q9NQE7) RecName: Full=Thymus-specific serine protease;         ...   102   3e-20
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50...   102   3e-20
AL021808_1(AL021808|pid:none) Human DNA sequence from clone XXba...   102   3e-20
(Q9QXE5) RecName: Full=Thymus-specific serine protease;         ...    94   7e-18
AE014297_2752(AE014297|pid:none) Drosophila melanogaster chromos...    94   1e-17
S44851(S44851)K12H4.7 protein - Caenorhabditis elegans                 91   1e-16
protein update 2009. 6.17
PSORT 

 psg: 0.77  gvh: 0.72  alm: 0.20  top: 0.40  tms: 0.07  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: endoplasmic reticulum
	 16.0 %: Golgi
	 16.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for VFB689 is cyt
5' end seq. ID VFB689F
5' end seq. 
>VFB689F.Seq
ATTTTTTTTTTTAAATTCTGNCATTACANGCATTGAAAAAAATGAACAAATCAATTTTAT
TATTAGTTTTAGTAATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTNTTCAATG
TTCGTNCTGATTTAAAAAATCAATTAAAATTTANACATTTTGATGATAGTTTANATTATG
ATGCAATCAATTATCAATGGTTCACTCAAAGNGTTGATCATTTTAATCCAGCAAACCCAA
CAACTTTCCAACAAAGATNTTTAATTAATGACCAATATTGGGATGGTNCAGGTCCAGTTT
TTATCATGATTAATGGNGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTG
TTGTTTGGGCTAAACAAGTTAGNGCACTTGTTGTTTCTNTTGAACATCGTTATTATGGNG
CTAGTTTTGTAACTGAAGACCTTTCACTTGAAAATTTACAATGGTTAAATTCAGCA----
------
Length of 5' end seq. 476
3' end seq. ID VFB689Z
3' end seq. 
>VFB689Z.Seq
----------TATGGTGGTGTTGATCAAATGTTTAACCTTTGTACACCACTTGGTAATCA
AAATGATGTTGCCACTTTTATGCAATCACTTGCAGGTAATTTCATGGGTGTAGTTCAATA
TAACGATGAAGAACCAGGTCAAATCGATATCGATTACCTTTGCAATATCATGACTAATCA
ATCATCAGATCCATTGACAAACTATATCCAAATTTGGGATCAATATGCTGATGGTGAATG
TGTTGATGTTTCATATGCTTCAATGATCGCTCAAAATCAAAATGTTACCAATGATGAAAA
TGCCATTGGTGGTAGAATGTGGTTCTATCAAACTTGTGTTGAATTTGGTTATTATCAATC
AAGTGATGCTCCATCTGCAAATCAACCATTTGGTAATTTATTCCCATTCCAACCATATCA
AATTCAACAATGTGCCGATAGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGAC
AATCACTGAATATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGT
AAATGGTTCAAATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAA
AAATACTTTATACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGT
ATCACCTCCAACT
Length of 3' end seq. 663
Connected seq. ID VFB689P
Connected seq. 
>VFB689P.Seq
ATTTTTTTTTTTAAATTCTGNCATTACANGCATTGAAAAAAATGAACAAATCAATTTTAT
TATTAGTTTTAGTAATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTNTTCAATG
TTCGTNCTGATTTAAAAAATCAATTAAAATTTANACATTTTGATGATAGTTTANATTATG
ATGCAATCAATTATCAATGGTTCACTCAAAGNGTTGATCATTTTAATCCAGCAAACCCAA
CAACTTTCCAACAAAGATNTTTAATTAATGACCAATATTGGGATGGTNCAGGTCCAGTTT
TTATCATGATTAATGGNGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTG
TTGTTTGGGCTAAACAAGTTAGNGCACTTGTTGTTTCTNTTGAACATCGTTATTATGGNG
CTAGTTTTGTAACTGAAGACCTTTCACTTGAAAATTTACAATGGTTAAATTCAGCA----
------TATGGTGGTGTTGATCAAATGTTTAACCTTTGTACACCACTTGGTAATCAAAAT
GATGTTGCCACTTTTATGCAATCACTTGCAGGTAATTTCATGGGTGTAGTTCAATATAAC
GATGAAGAACCAGGTCAAATCGATATCGATTACCTTTGCAATATCATGACTAATCAATCA
TCAGATCCATTGACAAACTATATCCAAATTTGGGATCAATATGCTGATGGTGAATGTGTT
GATGTTTCATATGCTTCAATGATCGCTCAAAATCAAAATGTTACCAATGATGAAAATGCC
ATTGGTGGTAGAATGTGGTTCTATCAAACTTGTGTTGAATTTGGTTATTATCAATCAAGT
GATGCTCCATCTGCAAATCAACCATTTGGTAATTTATTCCCATTCCAACCATATCAAATT
CAACAATGTGCCGATAGTTTTGGTATTCCAAATATGTATCCAAACGTTAATTGGACAATC
ACTGAATATGGTGGTATTAATCCAGAACCATCCTCTGTTGATAATACCTTATATGTAAAT
GGTTCAAATGATGAATGGCACAATCTTGCAATCTTACCAGGTAATGCAAATGCTAAAAAT
ACTTTATACATTATTGGTACAAGTCATTGTGCTGATATGATGATTCCAACTTCAGTATCA
CCTCCAACT
Length of connected seq. 1139
Full length Seq ID -
Full length Seq. -
Length of full length seq. -