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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM190
Library AF
(Link to library)
Clone ID AFM190
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM190 (AFM190Q) /CSM/AF/AFM1-D/AFM190Q.Seq.d/
ATTCAAAAAAAAAAATATTAAATCATTGTAGTATTTTGTTCNTATTCAAATTAAATATCA
ATNCAATTAAAAAANGTTAAAATTAAATTTGTAAAATCAATTTGTANCAAAANCTAGTAN
TTTAAAAAAAAAAAAACCAAAAAAAAAAXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence 
SKKKILNHCSILFXFKLNINXIKKX*n*ickinlxqxlvx*kkknqkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
iqkkky*iivvfcsysn*isxqlkxvkikfvksicxkx*xfkkkktkkk---


Frame B:
fkkkniksl*yfvxiqikyqxn*kxlklnl*nqfvxkxsxlkkkkpkk---


Frame C:
SKKKILNHCSILFXFKLNINXIKKX*n*ickinlxqxlvx*kkknqkk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SLF326 (SLF326Q) /CSM/SL/SLF3-B/SLF326Q.Seq.d/                         56   2e-07
SHA483 (SHA483Q) /CSM/SH/SHA4-D/SHA483Q.Seq.d/                         56   2e-07
SFK812 (SFK812Q) /CSM/SF/SFK8-A/SFK812Q.Seq.d/                         56   2e-07
SFK755 (SFK755Q) /CSM/SF/SFK7-C/SFK755Q.Seq.d/                         56   2e-07
SFJ803 (SFJ803Q) /CSM/SF/SFJ8-A/SFJ803Q.Seq.d/                         56   2e-07
SFJ560 (SFJ560Q) /CSM/SF/SFJ5-C/SFJ560Q.Seq.d/                         56   2e-07
SFJ435 (SFJ435Q) /CSM/SF/SFJ4-B/SFJ435Q.Seq.d/                         56   2e-07
SFJ232 (SFJ232Q) /CSM/SF/SFJ2-B/SFJ232Q.Seq.d/                         56   2e-07
SFI720 (SFI720Q) /CSM/SF/SFI7-A/SFI720Q.Seq.d/                         56   2e-07
SFI660 (SFI660Q) /CSM/SF/SFI6-C/SFI660Q.Seq.d/                         56   2e-07
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X52105) Dictyostelium discoideum SP60 gene for spore coat p...    52   0.006  1
(X51892) Dictyostelium discoideum SP60 gene for spore coat p...    52   0.006  1
(M34546) D.discoideum spore coat 60 (sp60) gene, 5' flank.         52   0.006  1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    52   0.006  1
(AU061669) Dictyostelium discoideum slug cDNA, clone SLF326.       52   0.006  1
(BJ401760) Dictyostelium discoideum cDNA clone:dds19f10, 3' ...    52   0.006  1
(BJ399685) Dictyostelium discoideum cDNA clone:dds7c04, 3' e...    52   0.006  1
(BJ391682) Dictyostelium discoideum cDNA clone:dds24f22, 5' ...    52   0.006  1
(BJ391222) Dictyostelium discoideum cDNA clone:dds15n15, 5' ...    52   0.006  1
(BJ390888) Dictyostelium discoideum cDNA clone:dds14i02, 5' ...    52   0.006  1
dna update 2009. 4. 9
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3039690
Number of Hits to DB: 113,176,701
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM190 is

5' end seq. ID AFM190F
5' end seq. 
>AFM190F.Seq
ATTCAAAAAAAAAAATATTAAATCATTGTAGTATTTTGTTCNTATTCAAATTAAATATCA
ATNCAATTAAAAAANGTTAAAATTAAATTTGTAAAATCAATTTGTANCAAAANCTAGTAN
TTTAAAAAAAAAAAAACCAAAAAAAAAAXXXXXXXXXX
Length of 5' end seq. 158
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -