VFB676
Library VF
(Link to library)
Clone ID VFB676
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12091-1
Original site URL
Representative seq. ID VFB676E
(Link to Original site)
Representative DNA sequence
>VFB676 (VFB676Q) /CSM/VF/VFB6-D/VFB676Q.Seq.d/
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAGNGG
TGATAAGAATGCTAAAGTCGCTGAAGTACCATTGACAACCAGTTCATTGAATAGTGGTGA
CTGTTTCCTTTTGGATGCAGGTTTAACTATTTATCAATTCAATGGTAGTAAATCAAGTCC
ACAAGAAAAGAATAAAGCCGCTGAAGTTGCACGTGCAATCGATGCAGAAAGAAAAGGTTT
ACCAAAAGTTGAAGTTTTCTGTGAAACCGATTCCGATATTCCAGCTGAATTTTGGAAACT
TTTAGGTGGAAAAGGTGCAATCGCTGCTAAACACGAAACTGCCCCAACCAAATCTGAAAA
AGTTTTATACAAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAAGTTTCACGTGG
TAAAATCAATAAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGATTTAGGTAATGA
AATCTATACTTGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACAGCATTCAGTCA
TGCAACTCAATACTTGGTAAACAATAAACGTTGTGAATATACTCCAATAGTTAGAGTTTT
AGAAAATGGTACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAATAAAACACAAC
AACAACAACAACACATTCAAAAAATCAATTTTGTATCATAAAATAAAATAAAATATAAAC
TTT
sequence update 2001. 6. 9
Translated Amino Acid sequence
i*KTIIKTTNTKMIKNRKLDITSTNVAGIGTDLDKKCRLDAASTEAQWKGVGQAPGLKIW
RIENFKVVPVPESSYGKFYDGDSYIILHTFKEGNSLKHDIHFFLGTFTTQDEAGTAAYKT
VELDDFLGGAPIQYRQCQSYESPSFLSLFPKYFILSGGVESGFNHVKPTEYKPRLLHIXG
DKNAKVAEVPLTTSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGL
PKVEVFCETDSDIPAEFWKLLGGKGAIAAKHETAPTKSEKVLYKLSDASGSLKFSEVSRG
KINKSSLKSEDVFIIDLGNEIYTWIGSKSSPNEKKTAFSHATQYLVNNKRCEYTPIVRVL
ENGTNQSFETLLSA***ntttttthsknqfciik*nki*t


Translated Amino Acid sequence (All Frames)
Frame A:
nlknnyknnkyknd*e*kiryyfn*ccwywnrfr*km*igcsfn*ssmercwsstrsqdl
en*kf*scpssriiiw*il*w**lyhftyf*rr*ft*t*ysflfryfyysr*swhccl*n
s*ir*flrwctnsissmsii*ksklfiiipkifhfirwc*iri*sc*tnri*tkiity*x
**ec*sr*stidnqfie*w*lfpfgcrfnylsiqw**ikstrke*sr*sctcnrcrkkrf
tks*sfl*nrfryss*iletfrwkrcnrc*trncpnqi*ksfiqiirciwft*il*sftw
*nq*iliki*rcfhh*fr**nlyldrfkiitk*kensiqscnsilgkq*tl*iysns*sf
rkwyksii*nfiicliikhnnnnntfkksilyhkik*ninf


Frame B:
i*KTIIKTTNTKMIKNRKLDITSTNVAGIGTDLDKKCRLDAASTEAQWKGVGQAPGLKIW
RIENFKVVPVPESSYGKFYDGDSYIILHTFKEGNSLKHDIHFFLGTFTTQDEAGTAAYKT
VELDDFLGGAPIQYRQCQSYESPSFLSLFPKYFILSGGVESGFNHVKPTEYKPRLLHIXG
DKNAKVAEVPLTTSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGL
PKVEVFCETDSDIPAEFWKLLGGKGAIAAKHETAPTKSEKVLYKLSDASGSLKFSEVSRG
KINKSSLKSEDVFIIDLGNEIYTWIGSKSSPNEKKTAFSHATQYLVNNKRCEYTPIVRVL
ENGTNQSFETLLSA***ntttttthsknqfciik*nki*t


Frame C:
fkkql*kqqiqk*lrien*illqlmllvleqi*iknvdwmqlqlklngkvlvkhqvsrfg
elkilklsqfqnhhmvnsmmvivisfyillkkvihlnmifisf*vllllkmklalllikq
ln*mis*vvhqfnivnvnhmkvqafyhysqnisfyqvvlnqdlimlnqqninqdyyilxv
irmlkslkyh*qpvh*ivvtvsfwmqv*lfinsmvvnqvhkkrikplklhvqsmqkekvy
qklkfsvkpipifqlnfgnf*vekvqsllntklpqpnlkkfytnyqmhlvhlnslkfhvv
ksinph*nlkmfssli*vmksilgsvqnhhqmkrkqhsvmqlntw*tinvvnilq*lef*
kmvqinhlklyyllnnktqqqqqhiqkinfvs*nkikykl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB676 (VFB676Q) /CSM/VF/VFB6-D/VFB676Q.Seq.d/ 2163 0.0
VFL329 (VFL329Q) /CSM/VF/VFL3-B/VFL329Q.Seq.d/ 2155 0.0
VFL167 (VFL167Q) /CSM/VF/VFL1-C/VFL167Q.Seq.d/ 2155 0.0
VFI790 (VFI790Q) /CSM/VF/VFI7-D/VFI790Q.Seq.d/ 2155 0.0
VFI559 (VFI559Q) /CSM/VF/VFI5-C/VFI559Q.Seq.d/ 2155 0.0
VFG582 (VFG582Q) /CSM/VF/VFG5-D/VFG582Q.Seq.d/ 2155 0.0
VFG124 (VFG124Q) /CSM/VF/VFG1-A/VFG124Q.Seq.d/ 2155 0.0
VFE814 (VFE814Q) /CSM/VF/VFE8-A/VFE814Q.Seq.d/ 2155 0.0
VFE168 (VFE168Q) /CSM/VF/VFE1-C/VFE168Q.Seq.d/ 2155 0.0
VFD453 (VFD453Q) /CSM/VF/VFD4-C/VFD453Q.Seq.d/ 2155 0.0

own update 2004. 8. 9
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

J03515|J03515.1 Slime mold (D.discoideum) severin mRNA, complete cds. 2155 0.0 1
U66525|U66525.1 Dictyostelium discoideum ORFveg114 mRNA, complete cds. 100 8e-17 1
BP190606|BP190606.1 Dugesia japonica cDNA, clone: 04979_HH, expressed in the head. 56 0.001 1
AP004171|AP004171.1 Mycoplasma penetrans genomic DNA, complete sequence, section 2/5. 36 0.055 9
AC104159|AC104159.2 Pan troglodytes clone RP43-82O21, WORKING DRAFT SEQUENCE, 1 ordered pieces. 48 0.26 1
AC137821|AC137821.13 Medicago truncatula clone mth2-15o11, WORKING DRAFT SEQUENCE, 2 ordered pieces. 42 0.27 3
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.29 14
AL031643|AL031643.1 Human DNA sequence from clone 769D20 on chromosome Xp21.1-21.3 Contains EST, STS, GSS. 36 0.58 5
AP002028|AP002028.1 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2043B18. 38 0.74 7
AC103388|AC103388.2 Mus musculus clone RP24-403B15, WORKING DRAFT SEQUENCE, 5 unordered pieces. 42 0.99 4
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U70047_1(U70047|pid:none) Physarum polycephalum actin-binding pr... 352 2e-95
AJ621806_1(AJ621806|pid:none) Suberites ficus mRNA for gelsolin ... 285 2e-75
AM920435_1012(AM920435|pid:none) Penicillium chrysogenum Wiscons... 262 2e-68
S51363(S51363;S49320) actin modulator protein EWAM - earthworm (... 258 3e-67
FN313917_1(FN313917|pid:none) Schistosoma japonicum isolate Anhu... 258 3e-67
AM270354_42(AM270354|pid:none) Aspergillus niger contig An16c002... 251 5e-65
EU334660_1(EU334660|pid:none) Strongylocentrotus purpuratus vill... 248 3e-64
FN357305_4(FN357305|pid:none) Schistosoma mansoni genome sequenc... 248 3e-64
AY814387_1(AY814387|pid:none) Schistosoma japonicum SJCHGC01371 ... 248 4e-64
FN317120_1(FN317120|pid:none) Schistosoma japonicum isolate Anhu... 248 4e-64
protein update 2009. 7.10
PSORT

psg: 0.40 gvh: 0.37 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.41 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VFB676 is nuc

5' end seq. ID VFB676F
5' end seq.
>VFB676F.Seq
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAGCGG
TGATAAGAATGCTAAAGTCGCTGAAGTACCATTG----------
Length of 5' end seq. 574
3' end seq. ID VFB676Z
3' end seq.
>VFB676Z.Seq
----------GGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATAT
TAGTGGTGATAAGAATGCTAAAGTCGCTGAAGTACCATTGACAACCAGTTCATTGAATAG
TGGTGACTGTTTCCTTTTGGATGCAGGTTTAACTATTTATCAATTCAATGGTAGTAAATC
AAGTCCACAAGAAAAGAATAAAGCCGCTGAAGTTGCACGTGCAATCGATGCAGAAAGAAA
AGGTTTACCAAAAGTTGAAGTTTTCTGTGAAACCGATTCCGATATTCCAGCTGAATTTTG
GAAACTTTTAGGTGGAAAAGGTGCAATCGCTGCTAAACACGAAACTGCCCCAACCAAATC
TGAAAAAGTTTTATACAAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAAGTTTC
ACGTGGTAAAATCAATAAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGATTTAGG
TAATGAAATCTATACTTGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACAGCATT
CAGTCATGCAACTCAATACTTGGTAAACAATAAACGTTGTGAATATACTCCAATAGTTAG
AGTTTTAGAAAATGGTACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAATAAAA
CACAACAACAACAACAACACATTCAAAAAATCAATTTTGTATCATAAAATAAAATAAAAT
ATAAACTTT
Length of 3' end seq. 719
Connected seq. ID VFB676P
Connected seq.
>VFB676P.Seq
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAGCGG
TGATAAGAATGCTAAAGTCGCTGAAGTACCATTG----------GGATTTAATCATGTTA
AACCAACAGAATATAAACCAAGATTATTACATATTAGTGGTGATAAGAATGCTAAAGTCG
CTGAAGTACCATTGACAACCAGTTCATTGAATAGTGGTGACTGTTTCCTTTTGGATGCAG
GTTTAACTATTTATCAATTCAATGGTAGTAAATCAAGTCCACAAGAAAAGAATAAAGCCG
CTGAAGTTGCACGTGCAATCGATGCAGAAAGAAAAGGTTTACCAAAAGTTGAAGTTTTCT
GTGAAACCGATTCCGATATTCCAGCTGAATTTTGGAAACTTTTAGGTGGAAAAGGTGCAA
TCGCTGCTAAACACGAAACTGCCCCAACCAAATCTGAAAAAGTTTTATACAAATTATCAG
ATGCATCTGGTTCACTTAAATTCTCTGAAGTTTCACGTGGTAAAATCAATAAATCCTCAT
TAAAATCTGAAGATGTTTTCATCATTGATTTAGGTAATGAAATCTATACTTGGATCGGTT
CAAAATCATCACCAAATGAAAAGAAAACAGCATTCAGTCATGCAACTCAATACTTGGTAA
ACAATAAACGTTGTGAATATACTCCAATAGTTAGAGTTTTAGAAAATGGTACAAATCAAT
CATTTGAAACTTTATTATCTGCTTAATAATAAAACACAACAACAACAACAACACATTCAA
AAAATCAATTTTGTATCATAAAATAAAATAAAATATAAACTTT
Length of connected seq. 1293
Full length Seq ID VFB676E
Full length Seq.
>VFB676E.Seq
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAGNGG
TGATAAGAATGCTAAAGTCGCTGAAGTACCATTGACAACCAGTTCATTGAATAGTGGTGA
CTGTTTCCTTTTGGATGCAGGTTTAACTATTTATCAATTCAATGGTAGTAAATCAAGTCC
ACAAGAAAAGAATAAAGCCGCTGAAGTTGCACGTGCAATCGATGCAGAAAGAAAAGGTTT
ACCAAAAGTTGAAGTTTTCTGTGAAACCGATTCCGATATTCCAGCTGAATTTTGGAAACT
TTTAGGTGGAAAAGGTGCAATCGCTGCTAAACACGAAACTGCCCCAACCAAATCTGAAAA
AGTTTTATACAAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAAGTTTCACGTGG
TAAAATCAATAAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGATTTAGGTAATGA
AATCTATACTTGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACAGCATTCAGTCA
TGCAACTCAATACTTGGTAAACAATAAACGTTGTGAATATACTCCAATAGTTAGAGTTTT
AGAAAATGGTACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAATAAAACACAAC
AACAACAACAACACATTCAAAAAATCAATTTTGTATCATAAAATAAAATAAAATATAAAC
TTT
Length of full length seq. 1203