>VFB670 (VFB670Q) /CSM/VF/VFB6-C/VFB670Q.Seq.d/
XXXXXXXXXXCTCCAAAATAGTATTGGTGCCGTGCCATCACCATTCGATTGTTTCCTCGC
CCTTCGTGGTTTGAAGACTCTCCACGTTCGTATGGAAGCTCATCAAAAGAATGCTTTCGC
CATTTGCAATTTCCTCGAAAAACATCCAAAAGTTGAAAGAGTCATCTATCCAGGTCTCCC
ATCTCATCCNCAACATGAGATTTGCAAACGTCAAATGAAAGGTTATGGTGGTATGGTTGT
TTTCTTTGTTAAAGGTTCAATCGATCAAAGCAGATCTTTCTTGGAGAATATTAAACTCTT
TGCTCTTGCTGAATCTTTAGGTGGTGTCGAATCTTTAATTGAACTTCCATCAGTTATGAC
TCACGCAAGTGTTCCAGCTGAAGAAAGAGCTAAACTCGGTATCTCTGATACTTTAATTCG
TTTATCCGTTGGTATTGAAGATATTAATGATCTTTTAGCTGATATCTCTCAAGCTTTAGA
TAAATGTTAAAAAAATTAAAAAAATTAAAAATTAAAAAAATAAATAAATAAATAATAAAA
ATATTTGTAAT

---QNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPS
HPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTH
ASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQALDKC*kn*kn*klkk*ink**ky
l*

Frame A:
---skivlvpchhhsivsspfvv*rlstfvwklikrmlspfaisskniqklkessiqvsh
lixnmrfanvk*kvmvvwlfsllkvqsikadlswrilnsllllnl*vvsnl*lnfhql*l
tqvfqlkkelnsvslil*fvyplvlkilmif*lislkl*invkkikkikn*knk*innkn
icn


Frame B:
---pk*ywcraitirlfprpswfedsprsygssskecfrhlqfprktsks*kshlsrspi
ssxt*dlqtsnerlwwygcflc*rfnrskqiflgey*tlcsc*ifrwcrifn*tsisyds
rkcss*rks*tryl*yfnsfirwy*ry**sfs*ylssfr*mlkklkklkikkink*iiki
fv


Frame C:
---QNSIGAVPSPFDCFLALRGLKTLHVRMEAHQKNAFAICNFLEKHPKVERVIYPGLPS
HPQHEICKRQMKGYGGMVVFFVKGSIDQSRSFLENIKLFALAESLGGVESLIELPSVMTH
ASVPAEERAKLGISDTLIRLSVGIEDINDLLADISQALDKC*kn*kn*klkk*ink**ky
l*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFO678 (VFO678Q) /CSM/VF/VFO6-D/VFO678Q.Seq.d/                        940   0.0
VFN429 (VFN429Q) /CSM/VF/VFN4-B/VFN429Q.Seq.d/                        940   0.0
VFN251 (VFN251Q) /CSM/VF/VFN2-C/VFN251Q.Seq.d/                        940   0.0
VFN238 (VFN238Q) /CSM/VF/VFN2-B/VFN238Q.Seq.d/                        940   0.0
VFL833 (VFL833Q) /CSM/VF/VFL8-B/VFL833Q.Seq.d/                        940   0.0
VFL334 (VFL334Q) /CSM/VF/VFL3-B/VFL334Q.Seq.d/                        940   0.0
VFK744 (VFK744Q) /CSM/VF/VFK7-B/VFK744Q.Seq.d/                        940   0.0
VFK675 (VFK675Q) /CSM/VF/VFK6-D/VFK675Q.Seq.d/                        940   0.0
VFK651 (VFK651Q) /CSM/VF/VFK6-C/VFK651Q.Seq.d/                        940   0.0
VFK546 (VFK546Q) /CSM/VF/VFK5-B/VFK546Q.Seq.d/                        940   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AP004596|AP004596.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 4/13.    56  0.003  2
BQ125060|BQ125060.1 pb31b09.y1 Anc caninum L3 serum stim pAMP1 v1 Chiapelli McCarter Ancylostoma caninum cDNA 5' similar to SW:CGL_CAEEL P55216 PUTATIVE CYSTATHIONINE GAMMA-LYASE ;, mRNA sequence.    52  0.007  1
AF170901|AF170901.1 Lactococcus lactis subsp. cremoris MG1363 cystathionine beta/gamma-lyase (metC) gene, complete cds.    48  0.12  1
AF131880|AF131880.2 Lactococcus lactis subsp. cremoris strain MG1363 cystathionine beta-lyase MetC (metC) and O-acetylserine sulfhydrylase CysK (cysK) genes, complete cds.    48  0.12  1
AE006311|AE006311.1 Lactococcus lactis subsp. lactis IL1403 section 73 of 218 of the complete genome.    48  0.12  1
BH770924|BH770924.1 LLMGtag655 MG1363 Random Sequence Tag Library Lactococcus lactis subsp. cremoris genomic, DNA sequence.    48  0.12  1
CB404981|CB404981.1 OSTR034E8_1 AD-wrmcDNA Caenorhabditis elegans cDNA, mRNA sequence.    46  0.46  1
AU210889|AU210889.1 Caenorhabditis elegans cDNA clone:yk766b01 : 3' end, single read.    46  0.46  1
U58758|U58758.2 Caenorhabditis elegans cosmid ZK1127, complete sequence.    46  0.46  1
BJ104383|BJ104383.1 Caenorhabditis elegans cDNA clone:yk1061b03 : 5' end, single read.    46  0.46  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55DV9) RecName: Full=Cystathionine gamma-lyase;          EC=4....   317   1e-85
(P18757) RecName: Full=Cystathionine gamma-lyase;          EC=4....   223   2e-57
(Q8VCN5) RecName: Full=Cystathionine gamma-lyase;          EC=4....   221   1e-56
(Q60HG7) RecName: Full=Cystathionine gamma-lyase;          EC=4....   219   3e-56
BX842656_199(BX842656|pid:none) Bdellovibrio bacteriovorus compl...   219   4e-56
BC082653_1(BC082653|pid:none) Xenopus laevis hypothetical LOC494...   218   8e-56
(Q58DW2) RecName: Full=Cystathionine gamma-lyase;          EC=4....   218   1e-55
BC067624_1(BC067624|pid:none) Danio rerio cystathionase (cystath...   218   1e-55
BC151523_1(BC151523|pid:none) Bos taurus cystathionase (cystathi...   218   1e-55
AK223376_1(AK223376|pid:none) Homo sapiens mRNA for cystathionas...   214   2e-54

 psg: 0.88  gvh: 0.37  alm: 0.40  top: 0.63  tms: 0.00  mit: 0.25  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for VFB670 is nuc

>VFB670Z.Seq
----------CTCCAAAATAGTATTGGTGCCGTGCCATCACCATTCGATTGTTTCCTCGC
CCTTCGTGGTTTGAAGACTCTCCACGTTCGTATGGAAGCTCATCAAAAGAATGCTTTCGC
CATTTGCAATTTCCTCGAAAAACATCCAAAAGTTGAAAGAGTCATCTATCCAGGTCTCCC
ATCTCATCCNCAACATGAGATTTGCAAACGTCAAATGAAAGGTTATGGTGGTATGGTTGT
TTTCTTTGTTAAAGGTTCAATCGATCAAAGCAGATCTTTCTTGGAGAATATTAAACTCTT
TGCTCTTGCTGAATCTTTAGGTGGTGTCGAATCTTTAATTGAACTTCCATCAGTTATGAC
TCACGCAAGTGTTCCAGCTGAAGAAAGAGCTAAACTCGGTATCTCTGATACTTTAATTCG
TTTATCCGTTGGTATTGAAGATATTAATGATCTTTTAGCTGATATCTCTCAAGCTTTAGA
TAAATGTTAAAAAAATTAAAAAAATTAAAAATTAAAAAAATAAATAAATAAATAATAAAA
ATATTTGTAAT