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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB668
Library VF
(Link to library)
Clone ID VFB668
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09555-1
Original site URL
Representative seq. ID VFB668P
(Link to Original site)
Representative DNA sequence 
>VFB668 (VFB668Q) /CSM/VF/VFB6-C/VFB668Q.Seq.d/
CTGTTGGCCTACTGGCAAATAATTTGATTTAGTTTTTACCACCATATTTCATTAATCCAT
TTTTATTATCAAGGAAAAAATAAAATAAAAGAATAATTAATAAATAATGAATTTTAATAA
AGCAAGCACAACATTAAAAGATACAAAGAAATTAATTATTGTTTTGGAACATGCAACATT
AGATACAGTTAAAGTCAAAGAAAGCTTTCAATTATTAAATTGTGATGATCATGCTGACAT
TTTAAAAAAACATGGTAAAGAAGCATCAGAAGCTAGACCAGATATTTTACATCAATGTTT
ATTAGCACTTTTTGATAGTCCACTCAATAAAGCTGGTCTTCTTCAAGTTTTCATAAAAAC
TACTAAAAATGTTTTAATTGAAGTACATCCACAAACTAGAATTCCAAGAACTTTTAATAG
ATTTGCTGGTTTAATGGTTCAATTATTAAAGAAATTAAGCATTAGAGCAACAAATGGACC
AGATAAATTATTTAAAGTTATTAAGAATCCAATTACAGATCATTTAGCACCAGGAACTAA
AATATACXXXXXXXXXXACTTCATTCTNTGCACCAAAATGTGTAGATTTATTTGAATTTG
TTCCAGAAATTTTCGGATATGATCCATTACCAGTGATTCCAGTTTCAACTACACCAACAG
GTGTAGCATTAGGTTCATCAACCAATAACAACAACAATGTAAATAGTATTCAATCATTAA
ATTCATTAGGTGGAGCACAAGTTAGAAGTGCTGGTGAAAGTTATTATGAGGGTATGGAAG
ATGAAGAAGCAGCAGAAGAAGAAGAAAAAACAACAGAAACAAATAATAAAAATAAAAATA
AAAGAAAACAAGATGAAAAATCTGATAATGATAAAAAGAAACAAAAAAACTTCAAATACT
ACAACTACAACTACTTCGACTGCAACAACAGTACAAAAGAAACCAGAAAAGAAATCTGAT
CAATTAAATGGTTTACAACAAGTTTGTATTGTAATTGGTGCCATGTCAACTGGTGCTATG
AAAATCGAGTATAAACACGAAGAAATCGCTTTCTCAAATTATCCTTTATCCGCTGCTGGT
GCTTGTTTTAAAATTACTACAGTTTTTTAAAGACAATGGGGTATCTTGTAAAAGAAACAA
AAATAAATTAAAAAAAATTAAAAAATAAATAAAAAAAAATAAATAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
cwptgk*fdlvfttifh*sifiikekik*knn**IMNFNKASTTLKDTKKLIIVLEHATL
DTVKVKESFQLLNCDDHADILKKHGKEASEARPDILHQCLLALFDSPLNKAGLLQVFIKT
TKNVLIEVHPQTRIPRTFNRFAGLMVQLLKKLSIRATNGPDKLFKVIKNPITDHLAPGTK
IY---

---TSFXAPKCVDLFEFVPEIFGYDPLPVIPVSTTPTGVALGSSTNNNNNVNSIQSLNSL
GGAQVRSAGESYYEGMEDEEAAEEEEKTTETNNKNKNKRKQDEKSDNDKKKQKNFKYYNY
NYFDCNNSTKETRKEI*sikwfttslycnwchvnwcyenrv*trrnrflklsfircwclf
*nyysflktmgylvketkin*kklknk*kkinkk
Translated Amino Acid sequence (All Frames) 
Frame A:
llaywqii*fsfyhhislihfyyqgknkike*linnef**skhnikrykeinycfgtcni
rys*sqrklsiikl**sc*hfkktw*rsirs*tryftsmfistf**stq*swssssfhkn
y*kcfn*ststn*nsknf**icwfngsiikeikh*snkwtr*ii*sy*esnyrsfstrn*
ni---

---TSFXAPKCVDLFEFVPEIFGYDPLPVIPVSTTPTGVALGSSTNNNNNVNSIQSLNSL
GGAQVRSAGESYYEGMEDEEAAEEEEKTTETNNKNKNKRKQDEKSDNDKKKQKNFKYYNY
NYFDCNNSTKETRKEI*sikwfttslycnwchvnwcyenrv*trrnrflklsfircwclf
*nyysflktmgylvketkin*kklknk*kkinkk

Frame B:
cwptgk*fdlvfttifh*sifiikekik*knn**IMNFNKASTTLKDTKKLIIVLEHATL
DTVKVKESFQLLNCDDHADILKKHGKEASEARPDILHQCLLALFDSPLNKAGLLQVFIKT
TKNVLIEVHPQTRIPRTFNRFAGLMVQLLKKLSIRATNGPDKLFKVIKNPITDHLAPGTK
IY---

---lhsxhqnv*iylnlfqkfsdmihyq*fqfqlhqqv*h*vhqpitttm*ivfnh*ih*
vehklevlvkvimrvwkmkkqqkkkkkqqkqiikikikenkmknlimikrnkktsntttt
ttstattvqkkpekksdqlnglqqvcivigamstgamkieykheeiafsnyplsaagacf
kittvf*rqwgil*kkqk*ikkn*kinkkk*ik

Frame C:
vgllannli*flppyfinpfllsrkk*nkriink**ilikqaqh*kiqrn*llfwnmqh*
iqlkskkafny*ivmimltf*knmvkkhqkldqifyinvy*hflivhsiklvffkfs*kl
lkmf*lkyihklefqellidllv*wfny*rn*aleqqmdqinylkllriqlqii*hqelk
y---

---filctkmcrfi*icsrnfri*sitsdssfnytnrcsirfinq*qqqck*ysiikfir
wsts*kcw*kll*gygr*rssrrrrknnrnk**k*k*kktr*ki****ketkklqilqlq
llrlqqqykrnqkrnlin*mvynkfvl*lvpcqlvl*kssintkkslsqiilypllvlvl
kllqffkdngvsckrnknklkkikk*ikknk*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB668 (VFB668Q) /CSM/VF/VFB6-C/VFB668Q.Seq.d/                       1243   0.0
SHK191 (SHK191Q) /CSM/SH/SHK1-D/SHK191Q.Seq.d/                         48   3e-04
VHJ427 (VHJ427Q) /CSM/VH/VHJ4-B/VHJ427Q.Seq.d/                         44   0.005
VHD813 (VHD813Q) /CSM/VH/VHD8-A/VHD813Q.Seq.d/                         44   0.005
VHA742 (VHA742Q) /CSM/VH/VHA7-B/VHA742Q.Seq.d/                         44   0.005
SFH657 (SFH657Q) /CSM/SF/SFH6-C/SFH657Q.Seq.d/                         44   0.005
CHS333 (CHS333Q) /CSM/CH/CHS3-B/CHS333Q.Seq.d/                         44   0.005
CHR355 (CHR355Q) /CSM/CH/CHR3-C/CHR355Q.Seq.d/                         44   0.005
CHQ477 (CHQ477Q) /CSM/CH/CHQ4-D/CHQ477Q.Seq.d/                         44   0.005
CHN571 (CHN571Q) /CSM/CH/CHN5-C/CHN571Q.Seq.d/                         44   0.005
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   480  0.0  6
AL440574|AL440574.1 T3 end of clone BD0AA013C10 of library BD0AA from strain CBS 94 of  Candida tropicalis.    74  1e-27  4
AX489106|AX489106.1 Sequence 6406 from Patent WO02053728.         78  1e-18  5
AF222909|AF222909.1 Candida albicans Ylr186 (YLR186) gene, complete cds; and unknown gene.    78  2e-18  5
AZ550169|AZ550169.1 ENTCU89TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    58  2e-08  3
BP005516|BP005516.1 Ciona intestinalis cDNA, clone:ciad38b03, 5' end, single read.    70  7e-08  1
BW269272|BW269272.1 Ciona intestinalis cDNA, clone:cign052m17, 5' end, single read.    70  7e-08  1
AV866562|AV866562.1 Ciona intestinalis cDNA, clone:rcieg47b17, 3' end, single read.    70  7e-08  1
BW139437|BW139437.1 Ciona intestinalis cDNA, clone:rcign052m17, 3' end, single read.    70  7e-08  1
BW118480|BW118480.1 Ciona intestinalis cDNA, clone:rcitb080a16, 3' end, single read.    70  7e-08  1
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117076_25(AC117076|pid:none) Dictyostelium discoideum chromoso...   293   e-105
BC095789_1(BC095789|pid:none) Danio rerio hypothetical protein L...   182   2e-44
BC115095_1(BC115095|pid:none) Danio rerio zgc:136360, mRNA (cDNA...   182   2e-44
(Q9W4J5) RecName: Full=Probable ribosome biogenesis protein NEP1...   182   3e-44
AK298745_1(AK298745|pid:none) Homo sapiens cDNA FLJ60792 complet...   181   3e-44
(Q92979) RecName: Full=Probable ribosome biogenesis protein NEP1...   181   3e-44
AM270252_6(AM270252|pid:none) Aspergillus niger contig An11c0350...   172   2e-41
CU928170_79(CU928170|pid:none) Kluyveromyces thermotolerans stra...   171   5e-41
CP000496_290(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...   171   5e-41
CR382137_592(CR382137|pid:none) Debaryomyces hansenii strain CBS...   171   5e-41
protein update 2009. 6.17
PSORT 

 psg: 0.66  gvh: 0.29  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VFB668 is cyt
5' end seq. ID VFB668F
5' end seq. 
>VFB668F.Seq
CTGTTGGCCTACTGGCAAATAATTTGATTTAGTTTTTACCACCATATTTCATTAATCCAT
TTTTATTATCAAGGAAAAAATAAAATAAAAGAATAATTAATAAATAATGAATTTTAATAA
AGCAAGCACAACATTAAAAGATACAAAGAAATTAATTATTGTTTTGGAACATGCAACATT
AGATACAGTTAAAGTCAAAGAAAGCTTTCAATTATTAAATTGTGATGATCATGCTGACAT
TTTAAAAAAACATGGTAAAGAAGCATCAGAAGCTAGACCAGATATTTTACATCAATGTTT
ATTAGCACTTTTTGATAGTCCACTCAATAAAGCTGGTCTTCTTCAAGTTTTCATAAAAAC
TACTAAAAATGTTTTAATTGAAGTACATCCACAAACTAGAATTCCAAGAACTTTTAATAG
ATTTGCTGGTTTAATGGTTCAATTATTAAAGAAATTAAGCATTAGAGCAACAAATGGACC
AGATAAATTATTTAAAGTTATTAAGAATCCAATTACAGATCATTTAGCACCAGGAACTAA
AATATAC----------
Length of 5' end seq. 547
3' end seq. ID VFB668Z
3' end seq. 
>VFB668Z.Seq
----------ACTTCATTCTNTGCACCAAAATGTGTAGATTTATTTGAATTTGTTCCAGA
AATTTTCGGATATGATCCATTACCAGTGATTCCAGTTTCAACTACACCAACAGGTGTAGC
ATTAGGTTCATCAACCAATAACAACAACAATGTAAATAGTATTCAATCATTAAATTCATT
AGGTGGAGCACAAGTTAGAAGTGCTGGTGAAAGTTATTATGAGGGTATGGAAGATGAAGA
AGCAGCAGAAGAAGAAGAAAAAACAACAGAAACAAATAATAAAAATAAAAATAAAAGAAA
ACAAGATGAAAAATCTGATAATGATAAAAAGAAACAAAAAAACTTCAAATACTACAACTA
CAACTACTTCGACTGCAACAACAGTACAAAAGAAACCAGAAAAGAAATCTGATCAATTAA
ATGGTTTACAACAAGTTTGTATTGTAATTGGTGCCATGTCAACTGGTGCTATGAAAATCG
AGTATAAACACGAAGAAATCGCTTTCTCAAATTATCCTTTATCCGCTGCTGGTGCTTGTT
TTAAAATTACTACAGTTTTTTAAAGACAATGGGGTATCTTGTAAAAGAAACAAAAATAAA
TTAAAAAAAATTAAAAAATAAATAAAAAAAAATAAATAAAAAA
Length of 3' end seq. 633
Connected seq. ID VFB668P
Connected seq. 
>VFB668P.Seq
CTGTTGGCCTACTGGCAAATAATTTGATTTAGTTTTTACCACCATATTTCATTAATCCAT
TTTTATTATCAAGGAAAAAATAAAATAAAAGAATAATTAATAAATAATGAATTTTAATAA
AGCAAGCACAACATTAAAAGATACAAAGAAATTAATTATTGTTTTGGAACATGCAACATT
AGATACAGTTAAAGTCAAAGAAAGCTTTCAATTATTAAATTGTGATGATCATGCTGACAT
TTTAAAAAAACATGGTAAAGAAGCATCAGAAGCTAGACCAGATATTTTACATCAATGTTT
ATTAGCACTTTTTGATAGTCCACTCAATAAAGCTGGTCTTCTTCAAGTTTTCATAAAAAC
TACTAAAAATGTTTTAATTGAAGTACATCCACAAACTAGAATTCCAAGAACTTTTAATAG
ATTTGCTGGTTTAATGGTTCAATTATTAAAGAAATTAAGCATTAGAGCAACAAATGGACC
AGATAAATTATTTAAAGTTATTAAGAATCCAATTACAGATCATTTAGCACCAGGAACTAA
AATATAC----------ACTTCATTCTNTGCACCAAAATGTGTAGATTTATTTGAATTTG
TTCCAGAAATTTTCGGATATGATCCATTACCAGTGATTCCAGTTTCAACTACACCAACAG
GTGTAGCATTAGGTTCATCAACCAATAACAACAACAATGTAAATAGTATTCAATCATTAA
ATTCATTAGGTGGAGCACAAGTTAGAAGTGCTGGTGAAAGTTATTATGAGGGTATGGAAG
ATGAAGAAGCAGCAGAAGAAGAAGAAAAAACAACAGAAACAAATAATAAAAATAAAAATA
AAAGAAAACAAGATGAAAAATCTGATAATGATAAAAAGAAACAAAAAAACTTCAAATACT
ACAACTACAACTACTTCGACTGCAACAACAGTACAAAAGAAACCAGAAAAGAAATCTGAT
CAATTAAATGGTTTACAACAAGTTTGTATTGTAATTGGTGCCATGTCAACTGGTGCTATG
AAAATCGAGTATAAACACGAAGAAATCGCTTTCTCAAATTATCCTTTATCCGCTGCTGGT
GCTTGTTTTAAAATTACTACAGTTTTTTAAAGACAATGGGGTATCTTGTAAAAGAAACAA
AAATAAATTAAAAAAAATTAAAAAATAAATAAAAAAAAATAAATAAAAAA
Length of connected seq. 1180
Full length Seq ID -
Full length Seq. -
Length of full length seq. -