VFB667
Library VF
(Link to library)
Clone ID VFB667
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13894-1
Original site URL
Representative seq. ID VFB667Z
(Link to Original site)
Representative DNA sequence
>VFB667 (VFB667Q) /CSM/VF/VFB6-C/VFB667Q.Seq.d/
XXXXXXXXXXCGTCAAAAACAATTCCTTCGTACTTTTGATGAAATGTTACACACTACCCT
TTTGAAACAAATGACTGACGATGGTGTCAAATTTGTAACTGAAGCATCCATTAAATCATT
GGAAAGAGATGTCGATGGAAAGAGAATCATTGCCACCACAAACGCAGGTGTAAAATTACC
ACCAGTTGAATGTGTAATTTGGGCAATTGGTCGTGTACCAAATACTGATGATTTGGGTAT
TGACAAGGCTGGTATTCAATTGACAGAACAAAGTGGTTTCATTAAAGTAGACGAATTCCA
AAATACAAATGTACCAGGTGTCCATGCAGTTGGTGATATTTGTGGTAACTTTTTATTAAC
ACCAGTTGCAATCGCTGCTGGTCGTCGTCTTTCTGAACGTCTTTTCAATGGAAAATCCGA
TTTGAAATTCGAATATGAAAATGTTGCAACTGTTGTATTCTCTCATCCACCAATTGGTAC
CGTTGGTTTAACCGAACAAGAAGCAATCACCAAGTATGGTACTAAAAATATCAAATGTTA
CAATACCTCATTCATCAATATGTTTTATTCAGTTCAAGTTCATAAAGTTAGAACCTCTAT
GAAATTGGTTTGTTTAGGTAAAGAGGAAAAAGTTATTGGTTTA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---QKQFLRTFDEMLHTTLLKQMTDDGVKFVTEASIKSLERDVDGKRIIATTNAGVKLPP
VECVIWAIGRVPNTDDLGIDKAGIQLTEQSGFIKVDEFQNTNVPGVHAVGDICGNFLLTP
VAIAAGRRLSERLFNGKSDLKFEYENVATVVFSHPPIGTVGLTEQEAITKYGTKNIKCYN
TSFINMFYSVQVHKVRTSMKLVCLGKEEKVIGL


Translated Amino Acid sequence (All Frames)
Frame A:
---vknnsfvllmkcytlpf*nk*ltmvsnl*lkhplnhwkemsmereslppqtqv*nyh
qlnv*fgqlvvyqilmiwvltrlvfn*qnkvvslk*tnskiqmyqvsmqlvifvvtfy*h
qlqsllvvvflnvfsmenpi*nsnmkmlqllyslihqlvplv*pnkkqspsmvlkisnvt
iphssicfiqfkfiklepl*nwfv*vkrkkllv


Frame B:
---sktipsyf**nvthypfetnd*rwcqicn*sih*iigkrcrwkenhchhkrrckitt
s*mcnlgnwsctky**fgy*qgwysidrtkwfh*srripkykctrcpcsw*ylw*lfint
scnrcwsssf*tsfqwkirfeiri*kccnccilsstnwyrwfnrtrsnhqvwy*kyqmlq
ylihqyvlfssss*s*nlyeiglfr*rgksywf


Frame C:
---QKQFLRTFDEMLHTTLLKQMTDDGVKFVTEASIKSLERDVDGKRIIATTNAGVKLPP
VECVIWAIGRVPNTDDLGIDKAGIQLTEQSGFIKVDEFQNTNVPGVHAVGDICGNFLLTP
VAIAAGRRLSERLFNGKSDLKFEYENVATVVFSHPPIGTVGLTEQEAITKYGTKNIKCYN
TSFINMFYSVQVHKVRTSMKLVCLGKEEKVIGL


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB667 (VFB667Q) /CSM/VF/VFB6-C/VFB667Q.Seq.d/ 1255 0.0
SFF658 (SFF658Q) /CSM/SF/SFF6-C/SFF658Q.Seq.d/ 1235 0.0
VFI592 (VFI592Q) /CSM/VF/VFI5-D/VFI592Q.Seq.d/ 1223 0.0
AFE432 (AFE432Q) /CSM/AF/AFE4-B/AFE432Q.Seq.d/ 1221 0.0
AFO821 (AFO821Q) /CSM/AF/AFO8-A/AFO821Q.Seq.d/ 1205 0.0
AFC550 (AFC550Q) /CSM/AF/AFC5-C/AFC550Q.Seq.d/ 1203 0.0
CFE524 (CFE524Q) /CSM/CF/CFE5-A/CFE524Q.Seq.d/ 1199 0.0
AFM482 (AFM482Q) /CSM/AF/AFM4-D/AFM482Q.Seq.d/ 1195 0.0
VFJ110 (VFJ110Q) /CSM/VF/VFJ1-A/VFJ110Q.Seq.d/ 1191 0.0
AFD460 (AFD460Q) /CSM/AF/AFD4-C/AFD460Q.Seq.d/ 1187 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 1247 0.0 1
AX417043|AX417043.1 Sequence 4034 from Patent WO0228891. 64 3e-07 4
AL596166|AL596166.1 Listeria innocua Clip11262 complete genome, segment 4/12. 64 2e-06 4
AX417039|AX417039.1 Sequence 4030 from Patent WO0228891. 64 4e-06 4
AX417042|AX417042.1 Sequence 4033 from Patent WO0228891. 64 8e-06 6
AA388223|AA388223.1 vb59a07.r1 Ko mouse embryo 11 5dpc Mus musculus cDNA clone IMAGE:761268 5' similar to gb:X15722 GLUTATHIONE REDUCTASE (HUMAN );, mRNA sequence. 40 5e-04 2
BG801957|BG801957.1 0123-54 Mouse E14.5 retina lambda ZAP II Library Mus musculus cDNA, mRNA sequence. 40 5e-04 2
BI691583|BI691583.1 603307252F1 NCI_CGAP_Mam6 Mus musculus cDNA clone IMAGE:5343396 5', mRNA sequence. 40 7e-04 2
BQ178602|BQ178602.1 UI-M-EV0-bws-l-01-0-UI.r1 NIH_BMAP_EV0 Mus musculus cDNA clone IMAGE:5701392 5', mRNA sequence. 40 8e-04 2
BF787591|BF787591.1 602114520F1 NCI_CGAP_Kid14 Mus musculus cDNA clone IMAGE:4242484 5', mRNA sequence. 40 8e-04 2
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8T137) RecName: Full=Glutathione reductase; Short=GRa... 421 e-117
AB022189_1(AB022189|pid:none) Physarum polycephalum mRNA for glu... 232 8e-60
NRL(1GRH) glutathione reductase (EC 1.6.4.2) (Cys-58 modified by... 224 1e-57
NRL(1GRA) glutathione reductase (EC 1.6.4.2) (oxidized) (with &... 224 1e-57
AF228703_2(AF228703|pid:none) Homo sapiens mitochondrial glutath... 224 1e-57
(P00390) RecName: Full=Glutathione reductase, mitochondrial; ... 224 1e-57
BC161777_1(BC161777|pid:none) Xenopus tropicalis hypothetical pr... 223 5e-57
AY929277_1(AY929277|pid:none) Cercopithecus aethiops glutathione... 218 1e-55
AK159218_1(AK159218|pid:none) Mus musculus osteoclast-like cell ... 217 3e-55
(P47791) RecName: Full=Glutathione reductase, mitochondrial; ... 215 1e-54
protein update 2009. 6.17
PSORT

psg: 0.78 gvh: 0.34 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
16.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for VFB667 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFB667Z
3' end seq.
>VFB667Z.Seq
----------CGTCAAAAACAATTCCTTCGTACTTTTGATGAAATGTTACACACTACCCT
TTTGAAACAAATGACTGACGATGGTGTCAAATTTGTAACTGAAGCATCCATTAAATCATT
GGAAAGAGATGTCGATGGAAAGAGAATCATTGCCACCACAAACGCAGGTGTAAAATTACC
ACCAGTTGAATGTGTAATTTGGGCAATTGGTCGTGTACCAAATACTGATGATTTGGGTAT
TGACAAGGCTGGTATTCAATTGACAGAACAAAGTGGTTTCATTAAAGTAGACGAATTCCA
AAATACAAATGTACCAGGTGTCCATGCAGTTGGTGATATTTGTGGTAACTTTTTATTAAC
ACCAGTTGCAATCGCTGCTGGTCGTCGTCTTTCTGAACGTCTTTTCAATGGAAAATCCGA
TTTGAAATTCGAATATGAAAATGTTGCAACTGTTGTATTCTCTCATCCACCAATTGGTAC
CGTTGGTTTAACCGAACAAGAAGCAATCACCAAGTATGGTACTAAAAATATCAAATGTTA
CAATACCTCATTCATCAATATGTTTTATTCAGTTCAAGTTCATAAAGTTAGAACCTCTAT
GAAATTGGTTTGTTTAGGTAAAGAGGAAAAAGTTATTGGTTTA
Length of 3' end seq. 633
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -