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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB662
Library VF
(Link to library)
Clone ID VFB662
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15118-1
Original site URL
Representative seq. ID VFB662E
(Link to Original site)
Representative DNA sequence 
>VFB662 (VFB662Q) /CSM/VF/VFB6-C/VFB662Q.Seq.d/
ACTGTTGGCCTACTGGTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAA
CGACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCCCAAA
AACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAAC
TCAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAA
AGAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCC
AACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACAC
TGCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGG
TGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTANCTGCTGA
TGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATNTNTTCAATNTA
CAAAAAANACGGTTTAATCGGTTTAAACCGTGGTTTTGGNGNATCTGTCGGAGGTATNTT
TGTNTACAAANCTGCTTTCTTTGGNGGNTACGANACTGCTAAANGAATTTTATTAGGTGA
AAACAACAANAAAGCTTCATTTTGGGCTTCATGGGGTATCGCNCAAGTTGTCNCTACCAT
CGCTGGNGTAGTCAGCTACCCATTNGANACTGTTNGTAAAANAATGATNANGCAANCCGG
TCGNGCTGANATTCTTTATTCAAGCNCTTGGGATTGTTGGGTAAANATTGCCNCCCGTGA
AGGNCCAACTGCCTTCTTCAAAGGTGCTTTATCNAANGCCANCANAGGNTCAGGTGGNGC
NTTAGTTTTAGTTATTTATGATGAAANCCAAAAACNTATGGGTTTTGAANGTGGTGTTGG
TTCTGAATAAAAAAAACCNCAAAAAAAAAAACAGGATTTTAACTAAAAAAAAAAACATAC
ATAAAT
sequence update 2001. 6. 9
Translated Amino Acid sequence 
LLAYWCSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVPKTIVAPIERVKLLLQVQSAST
QIAADKQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHT
AKENPTKFFIGNLLSGGAAGATSLLFVYPLDFARTRLXADVGTGSARQFTGLGNCXXSXY
KKXGLIGLNRGFGXSVGGXFVYKXAFFGGYXTAKXILLGENNXKASFWASWGIAQVVXTI
AGVVSYPXXTVXKXMXXQXGRAXILYSSXWDCWVXIAXREGPTAFFKGALSXAXXGSGGA
LVLVIYDEXQKXMGFEXGVGSE*kkpqkkkqdfn*kkkht*
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllvfhi*lynyv*pkekrrific*rffnrwycrwcpknycctn*tc*iiitssicfn
sncc**tiqryrrlfc*sfkrtrchlimer*fsqcy*ifpnsss*lclqr*iqeilrqth
c*rkpnqifhw*fiiwwccwcnlitlclpirfcpysfxc*cwywfsssihwfr*lyxfnx
qkxrfnrfkpwfwxicrryxcxqxcflwxxrxc*xnfir*kqqxsfilgfmgyrxscxyh
rwxsqlpixxcx*xndxaxrsx*xslfkxlgllgkxcxp*rxncllqrcfixxxxrxrwx
xsfsyl**xpktygf*xwcwf*ikktxkkktgf*lkkktyin


Frame B:
LLAYWCSIYNYITMSNQKKNDVSSFVKDSLIGGTAGGVPKTIVAPIERVKLLLQVQSAST
QIAADKQYKGIVDCFVRVSKEQGVISLWRGNLANVIRYFPTQALNFAFKDKYKKFFVRHT
AKENPTKFFIGNLLSGGAAGATSLLFVYPLDFARTRLXADVGTGSARQFTGLGNCXXSXY
KKXGLIGLNRGFGXSVGGXFVYKXAFFGGYXTAKXILLGENNXKASFWASWGIAQVVXTI
AGVVSYPXXTVXKXMXXQXGRAXILYSSXWDCWVXIAXREGPTAFFKGALSXAXXGSGGA
LVLVIYDEXQKXMGFEXGVGSE*kkpqkkkqdfn*kkkht*


Frame C:
cwptgvpyiti*lcltkrkttylhllkil*svvlpvvsqklllhqlnvlnyyykfnllql
klllinntkvssivllefqknkvsshygevi*pmlldisqlklltlpskintrnsssdtl
lkktqpnfslviyylvvllvqphyslfth*ilpvlvxllmlvlvqlvnslv*vtvxxqxt
kxtv*sv*tvvlxxlsevxlxtxllslxxtxllxefy*vkttxklhfglhgvsxklslps
lx*sathxxlxvkx*xxxpvxlxffiqalgivg*xlppvkxqlpsskvlyxxpxxxqvxx
*f*lfmmkxknxwvlxvvlvlnkknxkkknriltkkknihk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB662 (VFB662Q) /CSM/VF/VFB6-C/VFB662Q.Seq.d/                       1633   0.0
VFM349 (VFM349Q) /CSM/VF/VFM3-C/VFM349Q.Seq.d/                       1580   0.0
VFL711 (VFL711Q) /CSM/VF/VFL7-A/VFL711Q.Seq.d/                       1574   0.0
VHJ163 (VHJ163Q) /CSM/VH/VHJ1-C/VHJ163Q.Seq.d/                       1522   0.0
VFL550 (VFL550Q) /CSM/VF/VFL5-C/VFL550Q.Seq.d/                       1179   0.0
VHP837 (VHP837Q) /CSM/VH/VHP8-B/VHP837Q.Seq.d/                       1176   0.0
VFN227 (VFN227Q) /CSM/VF/VFN2-B/VFN227Q.Seq.d/                       1124   0.0
VFM586 (VFM586Q) /CSM/VF/VFM5-D/VFM586Q.Seq.d/                       1116   0.0
VHH383 (VHH383Q) /CSM/VH/VHH3-D/VHH383Q.Seq.d/                       1096   0.0
VHH216 (VHH216Q) /CSM/VH/VHH2-A/VHH216Q.Seq.d/                       1084   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF039211|AF039211.1 Dictyostelium discoideum ADP/ATP translocase mRNA, complete cds.  1011  0.0  2
AF100676|AF100676.1 Dictyostelium discoideum ADP/ATP translocase gene, complete cds.   880  0.0  4
BG893792|BG893792.1 kt15d04.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  2e-27  4
AF480922|AF480922.1 Nyctotherus ovalis from Blaberus sp. var. Duesseldorf ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product.    70  2e-27  4
AF480920|AF480920.1 Nyctotherus ovalis from Periplaneta americana var. Bayer ADP/ATP carrier (AAC2) gene, complete cds; nuclear gene for hydrogenosomal product.    78  2e-27  4
BI397208|BI397208.1 kt58d01.y3 Strongyloides ratti L2 pAMP1 v1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  2e-27  4
CD421728|CD421728.1 ku87g12.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  2e-27  4
BQ479166|BQ479166.1 ku27e07.y1 Strongyloides ratti PA female naive SL1 TOPO v1 Strongyloides ratti cDNA similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  4e-27  4
BG894033|BG894033.1 kt17c05.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  3e-25  4
BG893967|BG893967.1 kt22b03.y1 Strongyloides ratti L1 pAMP1 v3 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to TR:Q17407 Q17407 ADP/ATP TRANSLOCASE. ;, mRNA sequence.    92  3e-25  4
dna update 2003. 9. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O97470) RecName: Full=Mitochondrial substrate carrier family pr...   518   e-145
AF424642_1(AF424642|pid:none) Phytophthora infestans clone MY-03...   345   1e-93
(Q9VZ70) RecName: Full=ADP,ATP carrier protein; AltName: Full=AD...   321   2e-86
DQ874397_1(DQ874397|pid:none) Pacifastacus leniusculus ATP/ADP t...   320   4e-86
BC061600_1(BC061600|pid:none) Xenopus tropicalis solute carrier ...   320   5e-86
AY725780_1(AY725780|pid:none) Oncometopia nigricans putative mit...   319   9e-86
EF077712_1(EF077712|pid:none) Marsupenaeus japonicus ATP/ADP tra...   319   9e-86
(Q27238) RecName: Full=ADP,ATP carrier protein 1; AltName: Full=...   319   1e-85
(P02722) RecName: Full=ADP/ATP translocase 1; AltName: Full=Aden...   318   1e-85
EU093076_1(EU093076|pid:none) Monochamus alternatus adenine nucl...   318   1e-85
protein update 2009. 7.10
PSORT 

 psg: 0.90  gvh: 0.58  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VFB662 is cyt
5' end seq. ID VFB662F
5' end seq. 
>VFB662F.Seq
ACTGTTGGCCTACTGGTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAA
CGACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCCCAAA
AACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAAC
TCAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAA
AGAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCC
AACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACAC
TGCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGG
TGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGA
TGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGT----------
Length of 5' end seq. 520
3' end seq. ID VFB662Z
3' end seq. 
>VFB662Z.Seq
----------GNGCAACCTCATTACTCTTTGTTTACCCATTANATTTTGCCCGNACTCGT
TTAACTGCTGANGTTGGNACTGGTTCAGCTCGTCAATTCNCTGGTTTAGGTAACTGTATN
TNTTCAATNTACAAAAAANACGGTTTAATCGGTTTAAACCGTGGTTTTGGNGNATCTGTC
GGAGGTATNTTTGTNTACAAANCTGCTTTCTTTGGNGGNTACGANACTGCTAAANGAATT
TTATTAGGTGAAAACAACAANAAAGCTTCATTTTGGGCTTCATGGGGTATCGCNCAAGTT
GTCNCTACCATCGCTGGNGTAGTCAGCTACCCATTNGANACTGTTNGTAAAANAATGATN
ANGCAANCCGGTCGNGCTGANATTCTTTATTCAAGCNCTTGGGATTGTTGGGTAAANATT
GCCNCCCGTGAAGGNCCAACTGCCTTCTTCAAAGGTGCTTTATCNAANGCCANCANAGGN
TCAGGTGGNGCNTTAGTTTTAGTTATTTATGATGAAANCCAAAAACNTATGGGTTTTGAA
NGTGGTGTTGGTTCTGAATAAAAAAAACCNCAAAAAAAAAAACAGGATTTTAACTAAAAA
AAAAAACATACATAAAT
Length of 3' end seq. 607
Connected seq. ID VFB662P
Connected seq. 
>VFB662P.Seq
ACTGTTGGCCTACTGGTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAA
CGACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCCCAAA
AACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAAC
TCAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAA
AGAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCC
AACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACAC
TGCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGG
TGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTAGCTGCTGA
TGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGT----------GNGCAACCTC
ATTACTCTTTGTTTACCCATTANATTTTGCCCGNACTCGTTTAACTGCTGANGTTGGNAC
TGGTTCAGCTCGTCAATTCNCTGGTTTAGGTAACTGTATNTNTTCAATNTACAAAAAANA
CGGTTTAATCGGTTTAAACCGTGGTTTTGGNGNATCTGTCGGAGGTATNTTTGTNTACAA
ANCTGCTTTCTTTGGNGGNTACGANACTGCTAAANGAATTTTATTAGGTGAAAACAACAA
NAAAGCTTCATTTTGGGCTTCATGGGGTATCGCNCAAGTTGTCNCTACCATCGCTGGNGT
AGTCAGCTACCCATTNGANACTGTTNGTAAAANAATGATNANGCAANCCGGTCGNGCTGA
NATTCTTTATTCAAGCNCTTGGGATTGTTGGGTAAANATTGCCNCCCGTGAAGGNCCAAC
TGCCTTCTTCAAAGGTGCTTTATCNAANGCCANCANAGGNTCAGGTGGNGCNTTAGTTTT
AGTTATTTATGATGAAANCCAAAAACNTATGGGTTTTGAANGTGGTGTTGGTTCTGAATA
AAAAAAACCNCAAAAAAAAAAACAGGATTTTAACTAAAAAAAAAAACATACATAAAT
Length of connected seq. 1127
Full length Seq ID VFB662E
Full length Seq. 
>VFB662E.Seq
ACTGTTGGCCTACTGGTGTTCCATATATAACTATATAACTATGTCTAACCAAAAGAAAAA
CGACGTATCTTCATTTGTTAAAGATTCTTTAATCGGTGGTACTGCCGGTGGTGTCCCAAA
AACTATTGTTGCACCAATTGAACGTGTTAAATTATTATTACAAGTTCAATCTGCTTCAAC
TCAAATTGCTGCTGATAAACAATACAAAGGTATCGTCGATTGTTTTGTTAGAGTTTCAAA
AGAACAAGGTGTCATCTCATTATGGAGAGGTAATTTAGCCAATGTTATTAGATATTTCCC
AACTCAAGCTCTTAACTTTGCCTTCAAAGATAAATACAAGAAATTCTTCGTCAGACACAC
TGCTAAAGAAAACCCAACCAAATTTTTCATTGGTAATTTATTATCTGGTGGTGCTGCTGG
TGCAACCTCATTACTCTTTGTTTACCCATTAGATTTTGCCCGTACTCGTTTANCTGCTGA
TGTTGGTACTGGTTCAGCTCGTCAATTCACTGGTTTAGGTAACTGTATNTNTTCAATNTA
CAAAAAANACGGTTTAATCGGTTTAAACCGTGGTTTTGGNGNATCTGTCGGAGGTATNTT
TGTNTACAAANCTGCTTTCTTTGGNGGNTACGANACTGCTAAANGAATTTTATTAGGTGA
AAACAACAANAAAGCTTCATTTTGGGCTTCATGGGGTATCGCNCAAGTTGTCNCTACCAT
CGCTGGNGTAGTCAGCTACCCATTNGANACTGTTNGTAAAANAATGATNANGCAANCCGG
TCGNGCTGANATTCTTTATTCAAGCNCTTGGGATTGTTGGGTAAANATTGCCNCCCGTGA
AGGNCCAACTGCCTTCTTCAAAGGTGCTTTATCNAANGCCANCANAGGNTCAGGTGGNGC
NTTAGTTTTAGTTATTTATGATGAAANCCAAAAACNTATGGGTTTTGAANGTGGTGTTGG
TTCTGAATAAAAAAAACCNCAAAAAAAAAAACAGGATTTTAACTAAAAAAAAAAACATAC
ATAAAT
Length of full length seq. 1026