>VFB649 (VFB649Q) /CSM/VF/VFB6-C/VFB649Q.Seq.d/
XXXXXXXXXXGAAGCTGAAAAAAGTTACTTTTGGTAATGATGAATCATCAACTTCAATTT
CAAATGAAACTGCTCAATATATTGGTGGTGAATCACTTAAATATTCAAGTGGTAACTCTA
AAGTTGTTCTTGCTTTTGAAGGTACTGCTCAATCAAACATTAAAGATGTTGCTGCCTTTT
CAGTTTTACAATCAATCTTAGGTAATGGTTGTCCAAAGACTGCACCAGGTCATGGTAGAA
CCTCAAGATTATTCAGTTTAACTAAAAATAATTCAAATATTGTTAATTCTGAAGCATTCA
ATTTAACTTATGGTGATTCTGGTTTATTCGGTGTTGTTGCTGAAGTTGAAGGTGCTACCG
TTGGTAAGACTGTTTCATTAATTACCTCTGAAATCGTTGCTGCCTCAAAGACTGCTGGTC
AAGAATTAGAACGTGCTAAAGCTGTCACTAAATCAAGCGTTTTAGAACAAGCTGAAAGCA
GAACCTCTGCCCTCGAATTCATTGGTAAACAAGCTATCTATACCGACAAAGTTTTAACTC
CAGCTGAATTTGCTGAAGAAATCTCTAAAGTTACCTCTGAAGATATTAAAAGAGTTGCCA
AGAAAATGACCTCCAAAAAACCAACCCTCGTTGTTGTTGGTGATGTCTCNATGCTCCAAC
TATCGAATCAGTTCAATCACAA

---KLKKVTFGNDESSTSISNETAQYIGGESLKYSSGNSKVVLAFEGTAQSNIKDVAAFS
VLQSILGNGCPKTAPGHGRTSRLFSLTKNNSNIVNSEAFNLTYGDSGLFGVVAEVEGATV
GKTVSLITSEIVAASKTAGQELERAKAVTKSSVLEQAESRTSALEFIGKQAIYTDKVLTP
AEFAEEISKVTSEDIKRVAKKMTSKKPTLVVVGDVSMLQLSNQFNH

Frame A:
---KLKKVTFGNDESSTSISNETAQYIGGESLKYSSGNSKVVLAFEGTAQSNIKDVAAFS
VLQSILGNGCPKTAPGHGRTSRLFSLTKNNSNIVNSEAFNLTYGDSGLFGVVAEVEGATV
GKTVSLITSEIVAASKTAGQELERAKAVTKSSVLEQAESRTSALEFIGKQAIYTDKVLTP
AEFAEEISKVTSEDIKRVAKKMTSKKPTLVVVGDVSMLQLSNQFNH


Frame B:
---s*kklllvmmnhqlqfqmkllnilvvnhlniqvvtlklflllkvllnqtlkmllpfq
fynqs*vmvvqrlhqvmvepqdysv*lkiiqillilkhsi*lmvilvysvlllklkvlpl
vrlfh*lplksllpqrllvkn*nvlklslnqaf*nklkaeplpsnslvnklsiptkf*lq
lnllkkslklplkilkelprk*ppknqpslllvmsxcsnyrissit


Frame C:
---aeksyfw***iinfnfk*ncsiyww*it*ifkw*l*scscf*rycsikh*rccclfs
ftinlr*wlskdctrsw*nlkiiqfn*k*fkyc*f*siqfnlw*fwfirccc*s*rcyrw
*dcfinyl*nrcclkdcwsrirtc*sch*ikrfrts*kqnlcprihw*tsylyrqsfnss
*ic*rnl*syl*ry*kscqendlqktnprccw*clxaptiesvqsq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB649 (VFB649Q) /CSM/VF/VFB6-C/VFB649Q.Seq.d/                       1326   0.0
AFN282 (AFN282Q) /CSM/AF/AFN2-D/AFN282Q.Seq.d/                       1296   0.0
VFG120 (VFG120Q) /CSM/VF/VFG1-A/VFG120Q.Seq.d/                       1291   0.0
VFF577 (VFF577Q) /CSM/VF/VFF5-D/VFF577Q.Seq.d/                       1291   0.0
SSK279 (SSK279Q) /CSM/SS/SSK2-D/SSK279Q.Seq.d/                       1283   0.0
AFE396 (AFE396Q) /CSM/AF/AFE3-D/AFE396Q.Seq.d/                       1283   0.0
CFH321 (CFH321Q) /CSM/CF/CFH3-A/CFH321Q.Seq.d/                       1281   0.0
VFH821 (VFH821Q) /CSM/VF/VFH8-A/VFH821Q.Seq.d/                       1275   0.0
VFF570 (VFF570Q) /CSM/VF/VFF5-C/VFF570Q.Seq.d/                       1275   0.0
SFK661 (SFK661Q) /CSM/SF/SFK6-C/SFK661Q.Seq.d/                       1273   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AW623216|AW623216.1 EST321161 tomato flower buds 3-8 mm, Cornell University Lycopersicon esculentum cDNA clone cTOB9M9 5', mRNA sequence.    48  0.15  1
AV971252|AV971252.1 Ciona intestinalis cDNA, clone:cicl21g21, 5' end, single read.    34  0.42  2
AV962678|AV962678.1 Ciona intestinalis cDNA, clone:cilv05e12, 5' end, single read.    34  0.42  2
BW035294|BW035294.1 Ciona intestinalis cDNA, clone:cibd028f16, 5' end, single read.    34  0.48  2
BW251013|BW251013.1 Ciona intestinalis cDNA, clone:citb088l19, 5' end, single read.    34  0.49  2
AC079008|AC079008.2 Homo sapiens chromosome 4 clone RP11-163O21 map 4, WORKING DRAFT SEQUENCE, 20 unordered pieces.    42  0.72  6
AC005699|AC005699.9 Homo sapiens chromosome 4 clone C0473M13 map 4p16, complete sequence.    42  1.7  2
AC137744|AC137744.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone Ba0074L11, *** SEQUENCING IN PROGRESS ***, 11 ordered pieces.    44  2.3  1
AL928892|AL928892.6 Zebrafish DNA sequence from clone DKEY-216E6.    44  2.3  1
BJ035905|BJ035905.1 Xenopus laevis cDNA clone:XL024k08, 5' end, single read.    44  2.3  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC085400_1(BC085400|pid:none) Danio rerio peptidase (mitochondri...    94   3e-18
AK226475_1(AK226475|pid:none) Arabidopsis thaliana mRNA for hypo...    90   7e-17
AY035171_1(AY035171|pid:none) Arabidopsis thaliana putative mito...    89   1e-16
AC025726_20(AC025726|pid:none) Caenorhabditis elegans cosmid Y71...    87   5e-16
(O04308) RecName: Full=Probable mitochondrial-processing peptida...    87   6e-16
BT061204_1(BT061204|pid:none) Zea mays full-length cDNA clone ZM...    86   8e-16
CP001576_112(CP001576|pid:none) Micromonas sp. RCC299 chromosome...    86   1e-15
AK069568_1(AK069568|pid:none) Oryza sativa Japonica Group cDNA c...    86   1e-15
AM910992_92(AM910992|pid:none) Plasmodium knowlesi strain H chro...    85   2e-15
AB049578_1(AB049578|pid:none) Morus alba a-MPP mRNA for mitochon...    85   2e-15

 psg: 0.69  gvh: 0.49  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for VFB649 is cyt

>VFB649Z.Seq
----------GAAGCTGAAAAAAGTTACTTTTGGTAATGATGAATCATCAACTTCAATTT
CAAATGAAACTGCTCAATATATTGGTGGTGAATCACTTAAATATTCAAGTGGTAACTCTA
AAGTTGTTCTTGCTTTTGAAGGTACTGCTCAATCAAACATTAAAGATGTTGCTGCCTTTT
CAGTTTTACAATCAATCTTAGGTAATGGTTGTCCAAAGACTGCACCAGGTCATGGTAGAA
CCTCAAGATTATTCAGTTTAACTAAAAATAATTCAAATATTGTTAATTCTGAAGCATTCA
ATTTAACTTATGGTGATTCTGGTTTATTCGGTGTTGTTGCTGAAGTTGAAGGTGCTACCG
TTGGTAAGACTGTTTCATTAATTACCTCTGAAATCGTTGCTGCCTCAAAGACTGCTGGTC
AAGAATTAGAACGTGCTAAAGCTGTCACTAAATCAAGCGTTTTAGAACAAGCTGAAAGCA
GAACCTCTGCCCTCGAATTCATTGGTAAACAAGCTATCTATACCGACAAAGTTTTAACTC
CAGCTGAATTTGCTGAAGAAATCTCTAAAGTTACCTCTGAAGATATTAAAAGAGTTGCCA
AGAAAATGACCTCCAAAAAACCAACCCTCGTTGTTGTTGGTGATGTCTCNATGCTCCAAC
TATCGAATCAGTTCAATCACAA