VFB644
Library VF
(Link to library)
Clone ID VFB644
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10683-1
Original site URL
Representative seq. ID VFB644F
(Link to Original site)
Representative DNA sequence
>VFB644 (VFB644Q) /CSM/VF/VFB6-B/VFB644Q.Seq.d/
CACTGTTGGCCTACTGGACACTACATAAACATATTTTTTTCATTATACATATAAACAAAT
AAATCAAATACCATGGATGAAAGTATTAAAAAGTTACCAGATTTAGCTATTGCTGATTTA
ATTTTCACTGTTAAATTAGAAGGTAAAACTGGTACTGAATCATATAATAAATTAATTAAA
GAAATTGAAACACACAAAATGTTACCATTATATAAAATACTTGTAGAACAATTAAAATGG
ACAGAAGATCAAGGATTAGTATCAAAATTAAAAGCTGAAAATGAAAGTGAATTAAAAGCA
TTAGATAATAAAATTACTGATAGTGTTGAAAATTTTGGTGAGTCTGAAATTAGAGAAGCA
TATTTAGCAAAATCTGATTTCTATTGTCGTATCGGTGATAAAGATACAGCAGTTGAAATG
TATAGACAAACGTTTGAAAAAACAGTACCATTGGGTCAAAAATTAGATATTGTTTTTACA
TTAATTAGAATGGGTATTTTTTGGATGGATCATGATATTXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
hcwptghyiniffslyi*TNKSNTMDESIKKLPDLAIADLIFTVKLEGKTGTESYNKLIK
EIETHKMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREA
YLAKSDFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHD---


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptghyiniffslyi*TNKSNTMDESIKKLPDLAIADLIFTVKLEGKTGTESYNKLIK
EIETHKMLPLYKILVEQLKWTEDQGLVSKLKAENESELKALDNKITDSVENFGESEIREA
YLAKSDFYCRIGDKDTAVEMYRQTFEKTVPLGQKLDIVFTLIRMGIFWMDHD---


Frame B:
tvglldtt*tyffhytykqinqipwmkvlksyqi*llli*fslln*kvklvlnhiin*lk
klkhtkcyhyikyl*nn*ngqkikd*yqn*klkmkvn*kh*iikllivlkilvslklekh
i*qnlisivvsvikiqqlkcidkrlkkqyhwvkn*ilflh*lewvffgwimi---


Frame C:
llaywtlhkhiffiihink*ikyhg*ky*kvtrfsyc*fnfhc*irr*nwy*ii**in*r
n*ntqnvtii*ntcrtikmdrrsrisikiks*k*k*iksir**ny**c*kfw*v*n*rsi
fski*fllsyr**ryss*nv*tnv*knstigskirycfyin*ngyfldgs*y---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB644 (VFB644Q) /CSM/VF/VFB6-B/VFB644Q.Seq.d/ 987 0.0
VFE365 (VFE365Q) /CSM/VF/VFE3-C/VFE365Q.Seq.d/ 954 0.0
AHB478 (AHB478Q) /CSM/AH/AHB4-D/AHB478Q.Seq.d/ 954 0.0
AFM613 (AFM613Q) /CSM/AF/AFM6-A/AFM613Q.Seq.d/ 954 0.0
AFB302 (AFB302Q) /CSM/AF/AFB3-A/AFB302Q.Seq.d/ 954 0.0
AFJ152 (AFJ152Q) /CSM/AF/AFJ1-C/AFJ152Q.Seq.d/ 950 0.0
AFF282 (AFF282Q) /CSM/AF/AFF2-D/AFF282Q.Seq.d/ 950 0.0
AFK561 (AFK561Q) /CSM/AF/AFK5-C/AFK561Q.Seq.d/ 948 0.0
VSI593 (VSI593Q) /CSM/VS/VSI5-D/VSI593Q.Seq.d/ 946 0.0
VFL342 (VFL342Q) /CSM/VF/VFL3-B/VFL342Q.Seq.d/ 946 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ674420|AZ674420.1 ENTKF14TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 1e-05 2
AL627106|AL627106.8 Human DNA sequence from clone RP11-7K11 on chromosome 1. 42 4e-05 4
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome. 38 0.007 9
AC131080|AC131080.5 Mus musculus clone RP23-438H16, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 42 0.055 5
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence. 32 0.062 10
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.077 13
AP004172|AP004172.1 Mycoplasma penetrans genomic DNA, complete sequence, section 3/5. 34 0.077 9
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 34 0.082 6
AL078645|AL078645.31 Human DNA sequence from clone GS1-115G20 on chromosome 1. Contains (part of) a putative novel gene, the 5' end of a novel gene, a pseudogene similar to mouse Htf9c, ESTs, STSs and GSSs. 50 0.084 2
Z83843|Z83843.3 Human DNA sequence from clone RP3-368A4 on chromosome Xq12. 40 0.086 4
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55C75) RecName: Full=26S proteasome non-ATPase regulatory subu... 297 1e-79
BC064247_1(BC064247|pid:none) Xenopus tropicalis proteasome (pro... 138 7e-32
BC059159_1(BC059159|pid:none) Rattus norvegicus proteasome (pros... 138 1e-31
(Q3T0B2) RecName: Full=26S proteasome non-ATPase regulatory subu... 137 1e-31
(Q15008) RecName: Full=26S proteasome non-ATPase regulatory subu... 136 3e-31
BT075430_1(BT075430|pid:none) Osmerus mordax clone omor-eva-513-... 135 5e-31
BT043716_1(BT043716|pid:none) Salmo salar clone HM5_2909 proteas... 135 8e-31
BT073643_1(BT073643|pid:none) Oncorhynchus mykiss clone omyk-evn... 133 2e-30
BT047707_1(BT047707|pid:none) Salmo salar clone ssal-eve-502-367... 132 7e-30
BT082315_1(BT082315|pid:none) Anoplopoma fimbria clone afim-evh-... 132 7e-30
protein update 2009. 6.17
PSORT

psg: 0.75 gvh: 0.39 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VFB644 is cyt

5' end seq. ID VFB644F
5' end seq.
>VFB644F.Seq
CACTGTTGGCCTACTGGACACTACATAAACATATTTTTTTCATTATACATATAAACAAAT
AAATCAAATACCATGGATGAAAGTATTAAAAAGTTACCAGATTTAGCTATTGCTGATTTA
ATTTTCACTGTTAAATTAGAAGGTAAAACTGGTACTGAATCATATAATAAATTAATTAAA
GAAATTGAAACACACAAAATGTTACCATTATATAAAATACTTGTAGAACAATTAAAATGG
ACAGAAGATCAAGGATTAGTATCAAAATTAAAAGCTGAAAATGAAAGTGAATTAAAAGCA
TTAGATAATAAAATTACTGATAGTGTTGAAAATTTTGGTGAGTCTGAAATTAGAGAAGCA
TATTTAGCAAAATCTGATTTCTATTGTCGTATCGGTGATAAAGATACAGCAGTTGAAATG
TATAGACAAACGTTTGAAAAAACAGTACCATTGGGTCAAAAATTAGATATTGTTTTTACA
TTAATTAGAATGGGTATTTTTTGGATGGATCATGATATT----------
Length of 5' end seq. 519
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -