VFB615
Library VF
(Link to library)
Clone ID VFB615
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16602-1
Original site URL
Representative seq. ID VFB615F
(Link to Original site)
Representative DNA sequence
>VFB615 (VFB615Q) /CSM/VF/VFB6-A/VFB615Q.Seq.d/
AATTCTGACATTACAAGCATTGAAAAAAATGAACAAATCAATTTTATTATTAGTTTTAGT
AATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTATTCAATGTTCGTACTGATTT
AAAAAATCAATTAAAATTTAGACATTTTGATGATAGTTTAGATTATGATGCAATCAATTA
TCAATGGTTCACTCAAAGTGTTGATCATTTTAATCCAGCAAACCCAACAACTTTCCAACA
AAGATATTTAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATCATGATTAA
TGGTGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTTGGGCTAA
ACAAGTTAGTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTTTTGTAAC
TGAAGACCTTTCACTTGAAAATTTACAATGGTTAAATTCAGCACAAGCATTAGCAGATAA
TGCAGTTTTTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAAAATGGAT
TTCATTTGGTGGTAGTTATTCAGGAGCATTAACTTCATGGTTTAGAATTAAATATCCACA
TTTAGTTGATGCCACCATTGCATCAAGTGCACCAGTXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
ILTLQALKKMNKSILLLVLVIVSIIGSIDSKKVFNVRTDLKNQLKFRHFDDSLDYDAINY
QWFTQSVDHFNPANPTTFQQRYLINDQYWDGTGPVFIMINGEGPMDINTVTQLQFVVWAK
QVSALVVSLEHRYYGASFVTEDLSLENLQWLNSAQALADNAVFRNFVAQQYNVPKESKWI
SFGGSYSGALTSWFRIKYPHLVDATIASSAP---


Translated Amino Acid sequence (All Frames)
Frame A:
nsditsiekneqinfiisfsncinywfn*lkesiqcsy*fkksiki*tf***frl*cnql
smvhskc*sf*sskpnnfptkifn**pilgwyrssfyhd*w*rsngy*ycnptsicclg*
ts*ctccfs*tsllwc*fcn*rpft*kftmvkfstsisr*csf*kfcstti*ctkrikmd
fiww*lfrsinfmv*n*istfs*chhcikct---


Frame B:
ILTLQALKKMNKSILLLVLVIVSIIGSIDSKKVFNVRTDLKNQLKFRHFDDSLDYDAINY
QWFTQSVDHFNPANPTTFQQRYLINDQYWDGTGPVFIMINGEGPMDINTVTQLQFVVWAK
QVSALVVSLEHRYYGASFVTEDLSLENLQWLNSAQALADNAVFRNFVAQQYNVPKESKWI
SFGGSYSGALTSWFRIKYPHLVDATIASSAP---


Frame C:
f*hykh*kk*tnqfyy*f**lyqllvqltqrkysmfvli*kin*nldilmiv*immqsii
ngslkvliiliqqtqqlsnkdi*lmtnigmvqvqfls*lmvkvqwilil*pnfnllfgln
klvhllfllnivimvlvl*lktfhlkiyng*iqhkh*qimqfleil*hnnimyqknqngf
hlvvviqeh*lhglelnihi*lmpplhqvhq---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN372 (VFN372Q) /CSM/VF/VFN3-C/VFN372Q.Seq.d/ 1219 0.0
VFL395 (VFL395Q) /CSM/VF/VFL3-D/VFL395Q.Seq.d/ 1219 0.0
VFK613 (VFK613Q) /CSM/VF/VFK6-A/VFK613Q.Seq.d/ 1219 0.0
VFC861 (VFC861Q) /CSM/VF/VFC8-C/VFC861Q.Seq.d/ 1219 0.0
VFB615 (VFB615Q) /CSM/VF/VFB6-A/VFB615Q.Seq.d/ 1219 0.0
SFD818 (SFD818Q) /CSM/SF/SFD8-A/SFD818Q.Seq.d/ 1219 0.0
CFJ106 (CFJ106Q) /CSM/CF/CFJ1-A/CFJ106Q.Seq.d/ 1219 0.0
CFC642 (CFC642Q) /CSM/CF/CFC6-B/CFC642Q.Seq.d/ 1219 0.0
VFB691 (VFB691Q) /CSM/VF/VFB6-D/VFB691Q.Seq.d/ 1217 0.0
VFE310 (VFE310Q) /CSM/VF/VFE3-A/VFE310Q.Seq.d/ 1215 0.0

own update 2003.10.14
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI920191|BI920191.1 EST540126 potato microtubers, in vitro-grown Solanum tuberosum cDNA clone cSTE24M6 5' end, mRNA sequence. 44 1e-05 2
AF297520|AF297520.1 Haemophilus ducreyi alanyl-tRNA synthase (alaS), carbon storage regulator (csrA), and UDP-glucose pyrophosphorylase (galU) genes, complete cds. 40 0.047 2
BI178421|BI178421.1 EST519366 cSTE Solanum tuberosum cDNA clone cSTE13N22 5' sequence, mRNA sequence. 40 0.086 2
CB097763|CB097763.1 ku44g10.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:YM67_CAEEL P34528 HYPOTHETICAL 65.3 KD PROTEIN K12H4.7 IN CHROMOSOME III. [1] ;, mRNA sequence. 48 0.14 1
CB097614|CB097614.1 ku42h12.y1 Strongyloides ratti PA female naive pAMP1 v1 Strongyloides ratti cDNA 5' similar to SW:YM67_CAEEL P34528 HYPOTHETICAL 65.3 KD PROTEIN K12H4.7 IN CHROMOSOME III. [1] ;, mRNA sequence. 48 0.14 1
AC084578|AC084578.1 Caenorhabditis briggsae cosmid G39O07, complete sequence. 40 0.24 2
AI441512|AI441512.1 sa87c11.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-6285 5', mRNA sequence. 46 0.54 1
AW705268|AW705268.1 sk59a02.y1 Gm-c1019 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1019-6819 5', mRNA sequence. 46 0.54 1
BI317694|BI317694.1 saf19h09.y1 Gm-c1076 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1076-1506 5', mRNA sequence. 46 0.54 1
CA799428|CA799428.1 sat33f03.y1 Gm-c1056 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1056-3318 5', mRNA sequence. 46 0.54 1
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BC133755_1(BC133755|pid:none) Xenopus laevis hypothetical LOC495... 160 3e-38
BC108759_1(BC108759|pid:none) Xenopus laevis hypothetical protei... 160 3e-38
BC161646_1(BC161646|pid:none) Xenopus tropicalis hypothetical pr... 152 1e-35
BT080886_1(BT080886|pid:none) Caligus clemensi clone ccle-evs-50... 147 3e-34
AE014296_1236(AE014296|pid:none) Drosophila melanogaster chromos... 137 2e-31
S44851(S44851)K12H4.7 protein - Caenorhabditis elegans 136 6e-31
L14331_6(L14331|pid:none) Caenorhabditis elegans cosmid K12H4, c... 136 6e-31
(P34528) RecName: Full=Putative serine protease K12H4.7; ... 136 6e-31
FB848274_1(FB848274|pid:none) Sequence 67547 from Patent WO20080... 135 1e-30
T16490(T16490)hypothetical protein F56F10.1 - Caenorhabditis ele... 135 1e-30
protein update 2009. 6.17
PSORT

psg: 0.77 gvh: 0.72 alm: 0.20 top: 0.40 tms: 0.07 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

20.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
16.0 %: Golgi
16.0 %: mitochondrial
12.0 %: nuclear
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: peroxisomal

>> prediction for VFB615 is cyt

5' end seq. ID VFB615F
5' end seq.
>VFB615F.Seq
AATTCTGACATTACAAGCATTGAAAAAAATGAACAAATCAATTTTATTATTAGTTTTAGT
AATTGTATCAATTATTGGTTCAATTGACTCAAAGAAAGTATTCAATGTTCGTACTGATTT
AAAAAATCAATTAAAATTTAGACATTTTGATGATAGTTTAGATTATGATGCAATCAATTA
TCAATGGTTCACTCAAAGTGTTGATCATTTTAATCCAGCAAACCCAACAACTTTCCAACA
AAGATATTTAATTAATGACCAATATTGGGATGGTACAGGTCCAGTTTTTATCATGATTAA
TGGTGAAGGTCCAATGGATATTAATACTGTAACCCAACTTCAATTTGTTGTTTGGGCTAA
ACAAGTTAGTGCACTTGTTGTTTCTCTTGAACATCGTTATTATGGTGCTAGTTTTGTAAC
TGAAGACCTTTCACTTGAAAATTTACAATGGTTAAATTCAGCACAAGCATTAGCAGATAA
TGCAGTTTTTAGAAATTTTGTAGCACAACAATATAATGTACCAAAAGAATCAAAATGGAT
TTCATTTGGTGGTAGTTATTCAGGAGCATTAACTTCATGGTTTAGAATTAAATATCCACA
TTTAGTTGATGCCACCATTGCATCAAGTGCACCAGT----------
Length of 5' end seq. 636
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -