VFB612
Library VF
(Link to library)
Clone ID VFB612
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16272-1
Original site URL
Representative seq. ID VFB612P
(Link to Original site)
Representative DNA sequence
>VFB612 (VFB612Q) /CSM/VF/VFB6-A/VFB612Q.Seq.d/
GCCTACTGGAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTC
CACGTCACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAG
TCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTT
ACAAAGCTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACA
AAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTT
TAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAAC
ATTTAAGTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGA
AAGCTTTCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAG
CCTCTCTCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAG
TTCACAAATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTG
GTTCAATCGTCGAAAAAGTTAACTTTGCTGTXXXXXXXXXXGTCGAAAAAGTTAACTTTG
CTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAATTAA
TCGATGTTATCGGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGGGT
GTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCA
TGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCAT
CGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAA
CAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGT
GGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCT
GGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCT
GCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTT
CATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGNATCAACTAA
GGCTTAAATTCAATAAATTAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
LLESLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGY
KAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQH
LSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQV
HKLKLTQKKAHVLEIQVNGGSIVEKVNFA---

---VEKVNFAVANFEKTVNVTGVFAENELIDVIGCNQR*rfqwch*kmgcp*itkkdp*r
fkkgclywcmasipc*yhrpkswstrlpsscrkkqedlqnrssstrrr*tnlnr*d*irf
n*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkeyhhsnwsccprenhsqihr
ylqqvwsrsssnr*r*d*ifrrqeikxqlrlkfnkl


Translated Amino Acid sequence (All Frames)
Frame A:
aywshf*ttiti*vivnlklhvtvisvsdqereppdikvksshsqrmtvpkkst*lhswv
tklv*ltlsei*knqvqrctkkkslkpspslnvhqctllv*lvmlkplkvskptkpsgln
i*vitsvedytktgtnqnqrklspntlnntklkkvknqlkplskpskrdvqssvslltlk
ftn*n*lkrkhtslksksmvvqsskkltll---

---VEKVNFAVANFEKTVNVTGVFAENELIDVIGCNQR*rfqwch*kmgcp*itkkdp*r
fkkgclywcmasipc*yhrpkswstrlpsscrkkqedlqnrssstrrr*tnlnr*d*irf
n*kdyqsngwfrslryg*t*ilna*rlccwskkeslnlkkeyhhsnwsccprenhsqihr
ylqqvwsrsssnr*r*d*ifrrqeikxqlrlkfnkl

Frame B:
ptgvtskqq*qyess*i*sstsr*srfqtkkesrqtsr*sqvipkg*pypksplncihgl
qswydsrcqrfrktrfkdaqkrnr*srhhh*mstnvhcwfswlc*nrsrsqnlqnrlgst
fk**lp*kiiqklvqikikesfhqir*tirn*rr*kin*slspshqkemfsrpchcshss
sqikinskestrp*npsqwwfnrrks*lcc---

---skkltlllptlkrpstslvslpkmn*smlsgvtkgkgfngvikrwgvrklprkthkg
lrkvacigawhpsrvsttvpragqlgyhhrvernkkiyrigqaqpedgkqistgktefdl
tektinpmggfahygmvkheflmlkgcvagprkraltlrksittqtgraalekitlkfid
tsskfghglhqtaedktkyfgvkksxin*glnsin*

Frame C:
LLESLLNNNNNMSHRKFEAPRHGNLGFRPRKRAARHQGKVKSFPKDDRTQKVHLTAFMGY
KAGMTHVVRDLEKPGSKMHKKEIVEAVTIIECPPMYIVGLVGYVETAQGLKTYKTVWAQH
LSDNFRRRLYKNWYKSKSKKAFTKYVKQYETEEGKKSIEASLQAIKKRCSVVRVIAHTQV
HKLKLTQKKAHVLEIQVNGGSIVEKVNFA---

---rks*lcccql*kdrqrhwclcrk*inrcyrv*pkvkvsmvslkdgvsvnyqerpikv
*erlpvlvhgihpvlvppsqelvnsvtiivsketrrftesvklnqktvnksqpvrlnsi*
lkrlsiqwvvslttvwlnmns*clkvvllvqerep*p*ervsplklvvlpsrkslsnssi
ppaslvtvfikplkirlnisasrnqxstka*iq*i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB612 (VFB612Q) /CSM/VF/VFB6-A/VFB612Q.Seq.d/ 2474 0.0
VFG182 (VFG182Q) /CSM/VF/VFG1-D/VFG182Q.Seq.d/ 1251 0.0
VFH212 (VFH212Q) /CSM/VF/VFH2-A/VFH212Q.Seq.d/ 1249 0.0
VFL811 (VFL811Q) /CSM/VF/VFL8-A/VFL811Q.Seq.d/ 1247 0.0
VFN470 (VFN470Q) /CSM/VF/VFN4-C/VFN470Q.Seq.d/ 1237 0.0
VFM481 (VFM481Q) /CSM/VF/VFM4-D/VFM481Q.Seq.d/ 1237 0.0
VFM438 (VFM438Q) /CSM/VF/VFM4-B/VFM438Q.Seq.d/ 1237 0.0
VFM390 (VFM390Q) /CSM/VF/VFM3-D/VFM390Q.Seq.d/ 1237 0.0
VFM291 (VFM291Q) /CSM/VF/VFM2-D/VFM291Q.Seq.d/ 1237 0.0
VFM166 (VFM166Q) /CSM/VF/VFM1-C/VFM166Q.Seq.d/ 1237 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L08391|L08391.1 Dictyostelium discoideum ribosomal protein (L3) gene, complete cds. 1176 0.0 5
AX489150|AX489150.1 Sequence 6450 from Patent WO02053728. 78 2e-47 10
Z74971|Z74971.1 S.cerevisiae chromosome XV reading frame ORF YOR063w. 70 6e-35 8
J01351|J01351.1 S.cerevisiae ribosomal protein L3 (tcm1) gene. 62 3e-34 8
Z70678|Z70678.1 S.cerevisiae chromosome XV DNA, 54.7 kb region. 70 7e-27 9
BE641342|BE641342.1 Cri2_3_A04_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_3_A04 5', mRNA sequence. 76 1e-21 3
AL424946|AL424946.1 clone BA0AB002D01 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 66 3e-19 5
AX765804|AX765804.1 Sequence 13 from Patent WO03008440. 74 4e-19 4
AY052743|AY052743.1 Arabidopsis thaliana At1g43170/F1I21_18 mRNA, complete cds. 74 4e-19 4
AF361101|AF361101.1 Arabidopsis thaliana putative L3 cytoplasmic ribosomal protein (F1I21.L3) mRNA, complete cds. 74 4e-19 4
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P34113) RecName: Full=60S ribosomal protein L3; &JC4254(JC4254... 439 0.0
AM471157_1(AM471157|pid:none) Vitis vinifera contig VV78X211407.... 305 e-146
EF144245_1(EF144245|pid:none) Populus trichocarpa clone PX0011_L... 305 e-145
DQ241849_1(DQ241849|pid:none) Solanum tuberosum clone 187E04 rib... 301 e-145
AM452874_1(AM452874|pid:none) Vitis vinifera contig VV78X187512.... 299 e-144
BC158279_1(BC158279|pid:none) Xenopus tropicalis hypothetical pr... 300 e-144
EF146052_1(EF146052|pid:none) Populus trichocarpa clone WS0115_D... 303 e-144
EF145479_1(EF145479|pid:none) Populus trichocarpa clone WS01125_... 303 e-143
AJ720292_1(AJ720292|pid:none) Gallus gallus mRNA for hypothetica... 297 e-143
BT034517_1(BT034517|pid:none) Zea mays full-length cDNA clone ZM... 294 e-143
protein update 2009. 6.17
PSORT

psg: 0.75 gvh: 0.20 alm: 0.36 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.07
nuc: 0.18 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: nuclear
28.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: plasma membrane

>> prediction for VFB612 is nuc

5' end seq. ID VFB612F
5' end seq.
>VFB612F.Seq
GCCTACTGGAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTC
CACGTCACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAG
TCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTT
ACAAAGCTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACA
AAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTT
TAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAAC
ATTTAAGTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGA
AAGCTTTCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAG
CCTCTCTCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAG
TTCACAAATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTG
GTTCAATCGTCGAAAAAGTTAACTTTGCTGT----------
Length of 5' end seq. 631
3' end seq. ID VFB612Z
3' end seq.
>VFB612Z.Seq
----------GTCGAAAAAGTTAACTTTGCTGTTGCCAACTTTGAAAAGACCGTCAACGT
CACTGGTGTCTTTGCCGAAAATGAATTAATCGATGTTATCGGGTGTAACCAAAGGTAAAG
GTTTCAATGGTGTCATTAAAAGATGGGGTGTCCGTAAATTACCAAGAAAGACCCATAAAG
GTTTAAGAAAGGTTGCCTGTATTGGTGCATGGCATCCATCCCGTGTTAGTACCACCGTCC
CAAGAGCTGGTCAACTCGGTTACCATCATCGTGTCGAAAGAAACAAGAAGATTTACAGAA
TCGGTCAAGCTCAACCAGAAGACGGTAAACAAATCTCAACCGGTAAGACTGAATTCGATT
TAACTGAAAAGACTATCAATCCAATGGGTGGTTTCGCTCACTACGGTATGGTTAAACATG
AATTCTTAATGCTTAAAGGTTGTGTTGCTGGTCCAAGAAAGAGAGCCTTAACCTTAAGAA
AGAGTATCACCACTCAAACTGGTCGTGCTGCCCTCGAGAAAATCACTCTCAAATTCATCG
ATACCTCCAGCAAGTTTGGTCACGGTCTTCATCAAACCGCTGAAGATAAGACTAAATATT
TCGGCGTCAAGAAATCAAGNATCAACTAAGGCTTAAATTCAATAAATTAG
Length of 3' end seq. 640
Connected seq. ID VFB612P
Connected seq.
>VFB612P.Seq
GCCTACTGGAGTCACTTCTAAACAACAATAACAATATGAGTCATCGTAAATTTGAAGCTC
CACGTCACGGTAATCTCGGTTTCAGACCAAGAAAGAGAGCCGCCAGACATCAAGGTAAAG
TCAAGTCATTCCCAAAGGATGACCGTACCCAAAAAGTCCACTTAACTGCATTCATGGGTT
ACAAAGCTGGTATGACTCACGTTGTCAGAGATTTAGAAAAACCAGGTTCAAAGATGCACA
AAAAAGAAATCGTTGAAGCCGTCACCATCATTGAATGTCCACCAATGTACATTGTTGGTT
TAGTTGGTTATGTTGAAACCGCTCAAGGTCTCAAAACCTACAAAACCGTCTGGGCTCAAC
ATTTAAGTGATAACTTCCGTAGAAGATTATACAAAAACTGGTACAAATCAAAATCAAAGA
AAGCTTTCACCAAATACGTTAAACAATACGAAACTGAAGAAGGTAAAAAATCAATTGAAG
CCTCTCTCCAAGCCATCAAAAAGAGATGTTCAGTCGTCCGTGTCATTGCTCACACTCAAG
TTCACAAATTAAAATTAACTCAAAAGAAAGCACACGTCCTTGAAATCCAAGTCAATGGTG
GTTCAATCGTCGAAAAAGTTAACTTTGCTGT----------GTCGAAAAAGTTAACTTTG
CTGTTGCCAACTTTGAAAAGACCGTCAACGTCACTGGTGTCTTTGCCGAAAATGAATTAA
TCGATGTTATCGGGTGTAACCAAAGGTAAAGGTTTCAATGGTGTCATTAAAAGATGGGGT
GTCCGTAAATTACCAAGAAAGACCCATAAAGGTTTAAGAAAGGTTGCCTGTATTGGTGCA
TGGCATCCATCCCGTGTTAGTACCACCGTCCCAAGAGCTGGTCAACTCGGTTACCATCAT
CGTGTCGAAAGAAACAAGAAGATTTACAGAATCGGTCAAGCTCAACCAGAAGACGGTAAA
CAAATCTCAACCGGTAAGACTGAATTCGATTTAACTGAAAAGACTATCAATCCAATGGGT
GGTTTCGCTCACTACGGTATGGTTAAACATGAATTCTTAATGCTTAAAGGTTGTGTTGCT
GGTCCAAGAAAGAGAGCCTTAACCTTAAGAAAGAGTATCACCACTCAAACTGGTCGTGCT
GCCCTCGAGAAAATCACTCTCAAATTCATCGATACCTCCAGCAAGTTTGGTCACGGTCTT
CATCAAACCGCTGAAGATAAGACTAAATATTTCGGCGTCAAGAAATCAAGNATCAACTAA
GGCTTAAATTCAATAAATTAG
Length of connected seq. 1271
Full length Seq ID -
Full length Seq. -
Length of full length seq. -