VFB611 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFB611
Library	VF (Link to library)
Clone ID	VFB611 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16239-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFB6-A/VFB611Q.Seq.d/
Representative seq. ID	VFB611P (Link to Original site)
Representative DNA sequence	>VFB611 (VFB611Q) /CSM/VF/VFB6-A/VFB611Q.Seq.d/ AATTAATAATAATCAAATATTATTATAATAAAAGATTGGTAAAAAACCATGTCAAAATTA TTAATTTTATTGTTATTATCATTGGTTGCTTCAATCTTTTCAACTCCATTGGATGATTAT GTCAATGCTCCTGACGATACCTACAAGTGGACATTAAATAATACAATTGAATATGAAACT TTTACAGGTTACATTTTAGAGTTGACATCACAAACATGGATGGCTGAAAAATCAGATTGG CCAGTTTGGAAACATTGGGTTTCAATTTGTGTACCAAAAGGTGTTACAACTACAACTACA TTTATATATGTTGATGGTGGTTCAAATGATAACTGGAAAGTACCAGGTTCAATGGATCAA ACAATTGAAATTGTTTGTCTTTCATCTGGTTCAGTTAGTGTTGGTTTAACTCAAATTCCA AATCAACCAATCATTTTCAATAATGATGGTGTTCAAAGATTTGAAGATGATCTCGTTGCT TATACTTGGAGACAATTTTTAGGAAATACAAGTGAACCACTTTGGTTAGCAAGATTACCA ATGACTAAAGCTGTTGTTAAATGTATGGATGCAGTTCAAGAATTTGGTAAAACCATTGGT TACAATAGTGAAAACTTTGTTATTGCTGGTGCATCAAAGAGAGGTTGGACXXXXXXXXXX AAATGGTAGAATTAGCAGCAATTGTTGATCCATTTAGTTATCGTGATAGATATACAATGC CAATTTATGCAATTGCATCAAGTGATGATGAATTTTTCCTTCCAGATTCNCCACAATTCT TTTGGAATAATTTAACAGCAACACCAGAGAAACATCTTAGAATCGTACCAAATGCTGAAC ACTCTTTAATGGGTCATCAAATTGATATCATTTTATCGATTGTTACATTTGTTAGATTAT TAATTACAAATCAACCACGTCCAACTTTTACATGGGATATTACCTACTCTGAAGATTTAA ATAGTGGTACAATCGTTTTAACAGTACCAGAAGGTGGTATCATTCCATACAAAGTTAAAG TTTGGACAGCAGTAACTGAAAGTACAACCAGAAGAGATTTCCGTATCATCACATGTATGG ATATCACCAAATGTATTCAATTCATCATTTGGGATCCTTCNTGATATTACTCCAACTTCC ACTGGTGTATATTCAATCACTTTATCAAAACCAGATGCTGGTTGGAGAGCTTTCTTCCTT GAAGCTGAATATTTATATGCTAAAAATTCAATCGATGATGAATATACTCTTAAATTCACT TCTGAAGTTGCCATTGTACCAAATACTTTACCATTCGGTTCATGCTCTGAATATAATGCA TGTGGTGAGGTAGTCAAGGNATAGCGCAGTTCAACTGCAACTTT
sequence update	2001. 6. 1
Translated Amino Acid sequence	n**sniiiikdwKTMSKLLILLLLSLVASIFSTPLDDYVNAPDDTYKWTLNNTIEYET FTGYILELTSQTWMAEKSDWPVWKHWVSICVPKGVTTTTTFIYVDGGSNDNWKVPGSMDQ TIEIVCLSSGSVSVGLTQIPNQPIIFNNDGVQRFEDDLVAYTWRQFLGNTSEPLWLARLP MTKAVVKCMDAVQEFGKTIGYNSENFVIAGASKRGW--- ---MVELAAIVDPFSYRDRYTMPIYAIASSDDEFFLPDSPQFFWNNLTATPEKHLRIVPN AEHSLMGHQIDIILSIVTFVRLLITNQPRPTFTWDITYSEDLNSGTIVLTVPEGGIIPYK VKVWTAVTESTTRRDFRIITCMDITKCIQFIIWDPSyysnfhwcifnhfiktrcwlesf lpsifickfnr*iysihfschctkyftirfmlicmwgsqgiaqfncnf
Translated Amino Acid sequence (All Frames)	Frame A: n**sniiiikdwKTMSKLLILLLLSLVASIFSTPLDDYVNAPDDTYKWTLNNTIEYET FTGYILELTSQTWMAEKSDWPVWKHWVSICVPKGVTTTTTFIYVDGGSNDNWKVPGSMDQ TIEIVCLSSGSVSVGLTQIPNQPIIFNNDGVQRFEDDLVAYTWRQFLGNTSEPLWLARLP MTKAVVKCMDAVQEFGKTIGYNSENFVIAGASKRGW--- ---kwnqqllihlvividiqcqfmqlhqvmmnfsfqixhnsfgiiqqhqrnilesyq mlntlwviklisfyrllhlldylqinhvqllhgilptlkiivvqsfqyqkvvsfht klkfgqqlkvqpeeisvsshvwispnvfnssfgilxditptstgvysitlskpdagwra ffleaeylyaknsiddeytlkftsevaivpntlpfgscseynacgevvkxrsstat Frame B: innnqillkigkkpcqnyfycyyhwllqsfqlhwmimsmlltiptsghiiqlnmkl lqvtfshhkhgwlknqigqfgnigfqfvyqkvlqlqlhlymlmvvqmitgkyqvqwik qlklfvfhlvqlvlvlkfqinqsfsimmvfkdlkmisllilgdnfeiqvnhfgqdyq lklllnvwmqfknlvkplvtivktllllvhqrevg--- ---ngrissncsilsiynanlcncik*ifpsrfxtillefnsntretsnrtk ctlfngssnyhfidcyiciinyksttsnfymgyyllrfkwynrfnstrrwyhsiq ssldssnkynqkrfpyhhmygyhqmysihhlgsfxillqlplvyiqslyqnqmlvgel sslklniymlkiqsmmnillnsllklplyqilyhsvhalnimhvvrsrxsavqlql Frame C: liiikyyynkrlvknhvkiinfiviiigcfnlfnsiglcqcsrylqvdikyninf yrlhfrvditnmdgkirlasletlgfnlctkrcynynyiyicwwfk*lestrfngsn nnclsfiwfscwfnsnskstnhfqwcskirsrclyletifrkykttlvskitn dsccmygcssriwnhwlqklcycwcikerld--- ---MVELAAIVDPFSYRDRYTMPIYAIASSDDEFFLPDSPQFFWNNLTATPEKHLRIVPN AEHSLMGHQIDIILSIVTFVRLLITNQPRPTFTWDITYSEDLNSGTIVLTVPEGGIIPYK VKVWTAVTESTTRRDFRIITCMDITKCIQFIIWDPSyysnfhwcifnhfiktrcwlesf lpsifickfnriysihfschctkyftirfmlicmwgsqgiaqfncnf
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFB611 (VFB611Q) /CSM/VF/VFB6-A/VFB611Q.Seq.d/ 2627 0.0 VFE314 (VFE314Q) /CSM/VF/VFE3-A/VFE314Q.Seq.d/ 1346 0.0 VFI702 (VFI702Q) /CSM/VF/VFI7-A/VFI702Q.Seq.d/ 1336 0.0 VFN176 (VFN176Q) /CSM/VF/VFN1-D/VFN176Q.Seq.d/ 1332 0.0 VFK881 (VFK881Q) /CSM/VF/VFK8-D/VFK881Q.Seq.d/ 1330 0.0 AFC643 (AFC643Q) /CSM/AF/AFC6-B/AFC643Q.Seq.d/ 1328 0.0 VFL438 (VFL438Q) /CSM/VF/VFL4-B/VFL438Q.Seq.d/ 1324 0.0 VFG635 (VFG635Q) /CSM/VF/VFG6-B/VFG635Q.Seq.d/ 1324 0.0 SSD213 (SSD213Q) /CSM/SS/SSD2-A/SSD213Q.Seq.d/ 1318 0.0 VFL713 (VFL713Q) /CSM/VF/VFL7-A/VFL713Q.Seq.d/ 1310 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AC116989\|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence. 42 5e-10 9 AC116987\|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence. 54 2e-06 6 AJ238883\|AJ238883.1 Dictyostelium discoideum mRNA for guanylyl cyclase. 30 5e-04 7 AC116305\|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 32 0.044 16 AC116920\|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. 34 0.22 12 AZ292725\|AZ292725.1 RPCI-23-148A16.TV RPCI-23 Mus musculus genomic clone RPCI-23-148A16 , DNA sequence. 38 0.27 2 AW331929\|AW331929.1 S2E7 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence. 48 0.30 1 AX392737\|AX392737.1 Sequence 27 from Patent WO0212526. 36 0.34 5 AL929356\|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5. 34 0.43 10 AL049185\|AL049185.4 Plasmodium falciparum DNA * SEQUENCING IN PROGRESS * from MAL13P2. 38 0.49 9
dna update	2003. 9. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (Q5XM24) RecName: Full=Autocrine proliferation repressor; AltNam... 381 e-121 AC116987_4(AC116987\|pid:none) Dictyostelium discoideum chromosom... 175 3e-42 CP000473_2389(CP000473\|pid:none) Solibacter usitatus Ellin6076, ... 137 1e-30 CP000127_1294(CP000127\|pid:none) Nitrosococcus oceani ATCC 19707... 93 2e-17 CP000771_1644(CP000771\|pid:none) Fervidobacterium nodosum Rt17-B... 77 1e-12 AM286415_3673(AM286415\|pid:none) Yersinia enterocolitica subsp. ... 69 2e-12 AE015451_4974(AE015451\|pid:none) Pseudomonas putida KT2440 compl... 70 1e-10 CP000712_4860(CP000712\|pid:none) Pseudomonas putida F1, complete... 70 2e-10 AE008923_3072(AE008923\|pid:none) Xanthomonas axonopodis pv. citr... 65 5e-10 AE000512_932(AE000512\|pid:none) Thermotoga maritima MSB8, comple... 69 5e-10
protein update	2009. 6.17
PSORT	psg: 0.97 gvh: 0.90 alm: 0.31 top: 0.13 tms: 0.07 mit: 0.42 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 1.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 0.00 36.0 %: extracellular, including cell wall 32.0 %: plasma membrane 20.0 %: endoplasmic reticulum 12.0 %: Golgi >> prediction for VFB611 is exc
5' end seq. ID	VFB611F
5' end seq.	>VFB611F.Seq AATTAATAATAATCAAATATTATTATAATAAAAGATTGGTAAAAAACCATGTCAAAATTA TTAATTTTATTGTTATTATCATTGGTTGCTTCAATCTTTTCAACTCCATTGGATGATTAT GTCAATGCTCCTGACGATACCTACAAGTGGACATTAAATAATACAATTGAATATGAAACT TTTACAGGTTACATTTTAGAGTTGACATCACAAACATGGATGGCTGAAAAATCAGATTGG CCAGTTTGGAAACATTGGGTTTCAATTTGTGTACCAAAAGGTGTTACAACTACAACTACA TTTATATATGTTGATGGTGGTTCAAATGATAACTGGAAAGTACCAGGTTCAATGGATCAA ACAATTGAAATTGTTTGTCTTTCATCTGGTTCAGTTAGTGTTGGTTTAACTCAAATTCCA AATCAACCAATCATTTTCAATAATGATGGTGTTCAAAGATTTGAAGATGATCTCGTTGCT TATACTTGGAGACAATTTTTAGGAAATACAAGTGAACCACTTTGGTTAGCAAGATTACCA ATGACTAAAGCTGTTGTTAAATGTATGGATGCAGTTCAAGAATTTGGTAAAACCATTGGT TACAATAGTGAAAACTTTGTTATTGCTGGTGCATCAAAGAGAGGTTGGAC----------
Length of 5' end seq.	650
3' end seq. ID	VFB611Z
3' end seq.	>VFB611Z.Seq ----------AAATGGTAGAATTAGCAGCAATTGTTGATCCATTTAGTTATCGTGATAGA TATACAATGCCAATTTATGCAATTGCATCAAGTGATGATGAATTTTTCCTTCCAGATTCN CCACAATTCTTTTGGAATAATTTAACAGCAACACCAGAGAAACATCTTAGAATCGTACCA AATGCTGAACACTCTTTAATGGGTCATCAAATTGATATCATTTTATCGATTGTTACATTT GTTAGATTATTAATTACAAATCAACCACGTCCAACTTTTACATGGGATATTACCTACTCT GAAGATTTAAATAGTGGTACAATCGTTTTAACAGTACCAGAAGGTGGTATCATTCCATAC AAAGTTAAAGTTTGGACAGCAGTAACTGAAAGTACAACCAGAAGAGATTTCCGTATCATC ACATGTATGGATATCACCAAATGTATTCAATTCATCATTTGGGATCCTTCNTGATATTAC TCCAACTTCCACTGGTGTATATTCAATCACTTTATCAAAACCAGATGCTGGTTGGAGAGC TTTCTTCCTTGAAGCTGAATATTTATATGCTAAAAATTCAATCGATGATGAATATACTCT TAAATTCACTTCTGAAGTTGCCATTGTACCAAATACTTTACCATTCGGTTCATGCTCTGA ATATAATGCATGTGGTGAGGTAGTCAAGGNATAGCGCAGTTCAACTGCAACTTT
Length of 3' end seq.	704
Connected seq. ID	VFB611P
Connected seq.	>VFB611P.Seq AATTAATAATAATCAAATATTATTATAATAAAAGATTGGTAAAAAACCATGTCAAAATTA TTAATTTTATTGTTATTATCATTGGTTGCTTCAATCTTTTCAACTCCATTGGATGATTAT GTCAATGCTCCTGACGATACCTACAAGTGGACATTAAATAATACAATTGAATATGAAACT TTTACAGGTTACATTTTAGAGTTGACATCACAAACATGGATGGCTGAAAAATCAGATTGG CCAGTTTGGAAACATTGGGTTTCAATTTGTGTACCAAAAGGTGTTACAACTACAACTACA TTTATATATGTTGATGGTGGTTCAAATGATAACTGGAAAGTACCAGGTTCAATGGATCAA ACAATTGAAATTGTTTGTCTTTCATCTGGTTCAGTTAGTGTTGGTTTAACTCAAATTCCA AATCAACCAATCATTTTCAATAATGATGGTGTTCAAAGATTTGAAGATGATCTCGTTGCT TATACTTGGAGACAATTTTTAGGAAATACAAGTGAACCACTTTGGTTAGCAAGATTACCA ATGACTAAAGCTGTTGTTAAATGTATGGATGCAGTTCAAGAATTTGGTAAAACCATTGGT TACAATAGTGAAAACTTTGTTATTGCTGGTGCATCAAAGAGAGGTTGGAC---------- AAATGGTAGAATTAGCAGCAATTGTTGATCCATTTAGTTATCGTGATAGATATACAATGC CAATTTATGCAATTGCATCAAGTGATGATGAATTTTTCCTTCCAGATTCNCCACAATTCT TTTGGAATAATTTAACAGCAACACCAGAGAAACATCTTAGAATCGTACCAAATGCTGAAC ACTCTTTAATGGGTCATCAAATTGATATCATTTTATCGATTGTTACATTTGTTAGATTAT TAATTACAAATCAACCACGTCCAACTTTTACATGGGATATTACCTACTCTGAAGATTTAA ATAGTGGTACAATCGTTTTAACAGTACCAGAAGGTGGTATCATTCCATACAAAGTTAAAG TTTGGACAGCAGTAACTGAAAGTACAACCAGAAGAGATTTCCGTATCATCACATGTATGG ATATCACCAAATGTATTCAATTCATCATTTGGGATCCTTCNTGATATTACTCCAACTTCC ACTGGTGTATATTCAATCACTTTATCAAAACCAGATGCTGGTTGGAGAGCTTTCTTCCTT GAAGCTGAATATTTATATGCTAAAAATTCAATCGATGATGAATATACTCTTAAATTCACT TCTGAAGTTGCCATTGTACCAAATACTTTACCATTCGGTTCATGCTCTGAATATAATGCA TGTGGTGAGGTAGTCAAGGNATAGCGCAGTTCAACTGCAACTTT
Length of connected seq.	1354
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas