VFB603
Library VF
(Link to library)
Clone ID VFB603
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16505-1
Original site URL
Representative seq. ID VFB603Z
(Link to Original site)
Representative DNA sequence
>VFB603 (VFB603Q) /CSM/VF/VFB6-A/VFB603Q.Seq.d/
XXXXXXXXXXGTAAAGACTTTAGANGNAATTTGGAAACAATGTGATGTCATCTCATTACA
CACTCCATTGAATTNTCAAANTAAATATATGGTAAACTNTGAATCCATCGAAAANATNAN
AGATGGTGTTATGATTATCAACGTTTCAANAGGTGCTTTAGTTAATGCTTNTGANGCAAT
TGTTGGTTTAAAATCTGGTAAAATCAGTTCACTTGGTATGGATGTCTATGAAAATGAAAC
CGATTACTTTTATCAAGATCNCAATGGTTCAATCATTAAAGATGATAATCTCTCTTTATT
AATCTCTTATCCAAATGTTATGATCACTTCCCATCAAGCATGGNACACTAAANAAGCCAT
TTCTTGNATCTGTGGNACTTCNCTTCAAAATTTCGTTGATTTTAGATCNAATCAAATTAA
AAAATCNAATTTAGTTAATAANCCAATTTCATCNCAACCNGACNCNATAAATTAAAAAAA
AAAAAAATAATTAAAAATAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---KTLXXIWKQCDVISLHTPLNXQXKYMVNXESIEXXXDGVMIINVSXGALVNAXXAIV
GLKSGKISSLGMDVYENETDYFYQDXNGSIIKDDNLSLLISYPNVMITSHQAWXTKXAIS
XICGTSLQNFVDFRSNQIKKSNLVNXPISSQPDXIN*kkkk*lkikk


Translated Amino Acid sequence (All Frames)
Frame A:
---*rl*xxfgnnvmsshytlh*ixkxniw*txnpskxxxmvl*lstfqxvl*lmlxxql
lv*nlvksvhlvwmsmkmkpitfikixmvqslkmiisly*sliqml*slpikhgtlxkpf
lxsvxlxfkislildxiklknxi*lixqfhxnxtx*ikkkknn*k*kk


Frame B:
---kdfrxnletm*chlithsiexsx*iygkl*ihrkxxrwcydyqrfxrcfs*cx*xnc
wfkiw*nqftwygcl*k*nrlllsrsqwfnh*r**slfinllskcydhfpssmxh*xshf
lxlwxfxskfr*f*ixsn*kixfs**xnfixtxxxklkkkkiiknkk


Frame C:
---KTLXXIWKQCDVISLHTPLNXQXKYMVNXESIEXXXDGVMIINVSXGALVNAXXAIV
GLKSGKISSLGMDVYENETDYFYQDXNGSIIKDDNLSLLISYPNVMITSHQAWXTKXAIS
XICGTSLQNFVDFRSNQIKKSNLVNXPISSQPDXIN*kkkk*lkikk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB603 (VFB603Q) /CSM/VF/VFB6-A/VFB603Q.Seq.d/ 775 0.0
VSC493 (VSC493Q) /CSM/VS/VSC4-D/VSC493Q.Seq.d/ 765 0.0
VSC428 (VSC428Q) /CSM/VS/VSC4-B/VSC428Q.Seq.d/ 765 0.0
SSK267 (SSK267Q) /CSM/SS/SSK2-C/SSK267Q.Seq.d/ 765 0.0
VSD790 (VSD790Q) /CSM/VS/VSD7-D/VSD790Q.Seq.d/ 759 0.0
SSH306 (SSH306Q) /CSM/SS/SSH3-A/SSH306Q.Seq.d/ 757 0.0
VFD404 (VFD404Q) /CSM/VF/VFD4-A/VFD404Q.Seq.d/ 753 0.0
VFN213 (VFN213Q) /CSM/VF/VFN2-A/VFN213Q.Seq.d/ 747 0.0
VSB103 (VSB103Q) /CSM/VS/VSB1-A/VSB103Q.Seq.d/ 745 0.0
VFN468 (VFN468Q) /CSM/VF/VFN4-C/VFN468Q.Seq.d/ 745 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BH759651|BH759651.1 Mt_H2_024A01_f MtH2 Medicago truncatula BAC library Medicago truncatula genomic clone Mt_H2_024A01, DNA sequence. 42 6.6 1
AC097663|AC097663.3 Homo sapiens BAC clone RP11-736C20 from 7, complete sequence. 36 7.2 3

dna update 2002. 4. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54UF7) RecName: Full=Putative D-lactate dehydrogenase; ... 262 3e-69
AP006841_1461(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 134 2e-30
CP000140_1028(CP000140|pid:none) Parabacteroides distasonis ATCC... 132 5e-30
CP000139_2426(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 128 9e-29
CP000450_1261(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 127 2e-28
CR378666_268(CR378666|pid:none) Photobacterium profundum SS9; se... 126 3e-28
AE015928_1575(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 125 6e-28
CP000117_2647(CP000117|pid:none) Anabaena variabilis ATCC 29413,... 125 7e-28
AB1814(AB1814) D-lactate dehydrogenase [imported] - Nostoc sp. (... 125 7e-28
CP001071_760(CP001071|pid:none) Akkermansia muciniphila ATCC BAA... 122 5e-27
protein update 2009. 6.17
PSORT

psg: 0.86 gvh: 0.49 alm: 0.37 top: 0.43 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFB603 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFB603Z
3' end seq.
>VFB603Z.Seq
----------GTAAAGACTTTAGANGNAATTTGGAAACAATGTGATGTCATCTCATTACA
CACTCCATTGAATTNTCAAANTAAATATATGGTAAACTNTGAATCCATCGAAAANATNAN
AGATGGTGTTATGATTATCAACGTTTCAANAGGTGCTTTAGTTAATGCTTNTGANGCAAT
TGTTGGTTTAAAATCTGGTAAAATCAGTTCACTTGGTATGGATGTCTATGAAAATGAAAC
CGATTACTTTTATCAAGATCNCAATGGTTCAATCATTAAAGATGATAATCTCTCTTTATT
AATCTCTTATCCAAATGTTATGATCACTTCCCATCAAGCATGGNACACTAAANAAGCCAT
TTCTTGNATCTGTGGNACTTCNCTTCAAAATTTCGTTGATTTTAGATCNAATCAAATTAA
AAAATCNAATTTAGTTAATAANCCAATTTCATCNCAACCNGACNCNATAAATTAAAAAAA
AAAAAAATAATTAAAAATAAAAAAAA
Length of 3' end seq. 496
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -