>VFB602 (VFB602Q) /CSM/VF/VFB6-A/VFB602Q.Seq.d/
XXXXXXXXXXTCCAAGCATCTGTATCACCAGGTATTATTAGTTTAAGTTTTGTTGAACAA
ATGAATGGTCAAAACACAGTAATTTGTAAATCATTACCAGTTTATAATGATAAATTCTTA
GTTAAAATGAGTAGTTGTGATAATGTAGTTAGTTTATTCAAAGGTGCAACATACGTAACT
CAAGCAGTTTATAATAATACTGTCCCATTAAAGAATGTTATTGCTAATTTTGGTTTTTAT
GTTGGTTATCCAACTCCAACAACTACAACTACCACTGGTGGTGGTTCAACATCCCATGCT
ACAACCTCTACCACTGGTGGTGGTTCAACATCTCACGTCACAACCTCTACCACTGGTGGT
GGTTCAACAAGTCCATCTACCACTCACGCATCAACAACTGGTGGTGGTCATACAACAGGT
CCATCAACATCATCATCATCACATGCAACCTCTGGTCATCACGGTTCACACTCACAATCT
GAATCTGGTTCACATTCACAATCTGAATCTGGCTCACAATCTGAATCTGGCTCACAATCA
CAATCACAATCACAATCACAATCACAATCTGAATCAGGATCAGATTCATTCACAACCACC
ACAGCAGGTTCACAATCTGATTCATTCCCAGATTCATCAGATGGTCCATCTTATACATCT
GGTTCTTCTGGTTCATCAGGTACTTACATTGGAAGGTAAAGGTGTTAAAATNATATCTTT
TAAAATAAACACCCA

---QASVSPGIISLSFVEQMNGQNTVICKSLPVYNDKFLVKMSSCDNVVSLFKGATYVTQ
AVYNNTVPLKNVIANFGFYVGYPTPTTTTTTGGGSTSHATTSTTGGGSTSHVTTSTTGGG
STSPSTTHASTTGGGHTTGPSTSSSSHATSGHHGSHSQSESGSHSQSESGSQSESGSQSQ
SQSQSQSQSESGSDSFTTTTAGSQSDSFPDSSDGPSYTSGSSGSSGTYIGR*rc*nxif*
nkhp

Frame A:
---psicitryy*fkfc*tnewskhsnl*iitsl***ils*ne*l**cs*fiqrcnirns
ssl**ycpikecyc*fwflcwlsnsnnynyhwwwfnipcynlyhwwwfnisrhnlyhwww
fnksiyhsrinnwwwsynrsiniiiitcnlwssrftlti*iwftfti*iwlti*iwltit
ititititi*irirfihnhhsrfti*fiprfirwsilyiwffwfirylhwkvkvlkxyll
k*tp


Frame B:
---QASVSPGIISLSFVEQMNGQNTVICKSLPVYNDKFLVKMSSCDNVVSLFKGATYVTQ
AVYNNTVPLKNVIANFGFYVGYPTPTTTTTTGGGSTSHATTSTTGGGSTSHVTTSTTGGG
STSPSTTHASTTGGGHTTGPSTSSSSHATSGHHGSHSQSESGSHSQSESGSQSESGSQSQ
SQSQSQSQSESGSDSFTTTTAGSQSDSFPDSSDGPSYTSGSSGSSGTYIGR*rc*nxif*
nkhp


Frame C:
---khlyhqvllv*vllnk*mvktq*fvnhyqfimins*lk*vvvim*lvyskvqht*lk
qfiiilsh*rmlllilvfmlviqlqqlqlplvvvqhpmlqplplvvvqhltsqplplvvv
qqvhlplthqqlvvviqqvhqhhhhhmqplvitvhthnlnlvhihnlnlahnlnlahnhn
hnhnhnhnlnqdqihsqppqqvhnlihsqihqmvhlihlvllvhqvltlegkgvkxisfk
int

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VHO741 (VHO741Q) /CSM/VH/VHO7-B/VHO741Q.Seq.d/                        995   0.0
VFO658 (VFO658Q) /CSM/VF/VFO6-C/VFO658Q.Seq.d/                        995   0.0
VFI858 (VFI858Q) /CSM/VF/VFI8-C/VFI858Q.Seq.d/                        995   0.0
VFI764 (VFI764Q) /CSM/VF/VFI7-C/VFI764Q.Seq.d/                        995   0.0
VFI322 (VFI322Q) /CSM/VF/VFI3-A/VFI322Q.Seq.d/                        995   0.0
VFI233 (VFI233Q) /CSM/VF/VFI2-B/VFI233Q.Seq.d/                        995   0.0
VFH526 (VFH526Q) /CSM/VF/VFH5-B/VFH526Q.Seq.d/                        995   0.0
VFE445 (VFE445Q) /CSM/VF/VFE4-B/VFE445Q.Seq.d/                        995   0.0
VFD366 (VFD366Q) /CSM/VF/VFD3-C/VFD366Q.Seq.d/                        995   0.0
VFB602 (VFB602Q) /CSM/VF/VFB6-A/VFB602Q.Seq.d/                        995   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    62  1e-05  1
CF350937|CF350937.1 rl65c10.y1 Meloidogyne javanica J2 SMART pGEM Meloidogyne javanica cDNA 5', mRNA sequence.    34  0.011  3
Y07952|Y07952.1 D.discoideum mRNA for ssRNA-binding protein.      38  0.030  3
AL133496|AL133496.1 Drosophila melanogaster clone BACR43C24 WORKING DRAFT SEQUENCE; 144 unordered pieces.    44  0.26  2
X16491|X16491.1 Dictyostelium discoideum sp96 gene for spore coat protein SP96.    30  0.59  4
AG072910|AG072910.1 Pan troglodytes DNA, clone: PTB-064I19.R.     36  0.60  2
BE496632|BE496632.1 Hc_d11_07B11_SKPL Haemonchus contortus d11 mixed adult from David Knox Haemonchus contortus cDNA clone Hc_d11_07B11 5', mRNA sequence.    46  0.62  1
BX549168|BX549168.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse106c08_q1c.    46  0.62  1
AG084362|AG084362.1 Pan troglodytes DNA, clone: PTB-082B09.R.     36  0.64  2
AC020038|AC020038.1 Drosophila melanogaster, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    42  0.92  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM446570_1(AM446570|pid:none) Vitis vinifera contig VV78X034573....    48   3e-04
EU557269_8(EU557269|pid:none) Teleogryllus emma mitochondrion, c...    37   0.82
CP001068_1063(CP001068|pid:none) Ralstonia pickettii 12J chromos...    35   1.8
CU695238_87(CU695238|pid:none) Ralstonia solanacearum strain Mol...    35   3.1
CU914168_1593(CU914168|pid:none) Ralstonia solanacearum strain I...    35   3.1
CU633749_1834(CU633749|pid:none) Cupriavidus taiwanensis str. LM...    34   4.1
AE015928_2526(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    33   7.0
AM494940_72(AM494940|pid:none) Leishmania braziliensis chromosom...    33   9.1

 psg: 0.94  gvh: 0.48  alm: 0.49  top: 0.47  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFB602 is cyt

>VFB602Z.Seq
----------TCCAAGCATCTGTATCACCAGGTATTATTAGTTTAAGTTTTGTTGAACAA
ATGAATGGTCAAAACACAGTAATTTGTAAATCATTACCAGTTTATAATGATAAATTCTTA
GTTAAAATGAGTAGTTGTGATAATGTAGTTAGTTTATTCAAAGGTGCAACATACGTAACT
CAAGCAGTTTATAATAATACTGTCCCATTAAAGAATGTTATTGCTAATTTTGGTTTTTAT
GTTGGTTATCCAACTCCAACAACTACAACTACCACTGGTGGTGGTTCAACATCCCATGCT
ACAACCTCTACCACTGGTGGTGGTTCAACATCTCACGTCACAACCTCTACCACTGGTGGT
GGTTCAACAAGTCCATCTACCACTCACGCATCAACAACTGGTGGTGGTCATACAACAGGT
CCATCAACATCATCATCATCACATGCAACCTCTGGTCATCACGGTTCACACTCACAATCT
GAATCTGGTTCACATTCACAATCTGAATCTGGCTCACAATCTGAATCTGGCTCACAATCA
CAATCACAATCACAATCACAATCACAATCTGAATCAGGATCAGATTCATTCACAACCACC
ACAGCAGGTTCACAATCTGATTCATTCCCAGATTCATCAGATGGTCCATCTTATACATCT
GGTTCTTCTGGTTCATCAGGTACTTACATTGGAAGGTAAAGGTGTTAAAATNATATCTTT
TAAAATAAACACCCA