VFB590
Library VF
(Link to library)
Clone ID VFB590
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09552-1
Original site URL
Representative seq. ID VFB590P
(Link to Original site)
Representative DNA sequence
>VFB590 (VFB590Q) /CSM/VF/VFB5-D/VFB590Q.Seq.d/
TTATTGCAGTTGTTGAAGGATTCATGGCACCAAGTGAACTTTGTCAAAAAATTAAATTCT
GTTCATCATCATCATCAACCAATGATTTCGATTTTATTGGTAGTAGTACAACTGATTGTG
AAATTTGTACATTTATTTCAGGATATGCTGAAAATTTCTTGGAAGAAAANAAAACACTTG
AAGATATAATTAAAGNTGTTGATGATNCCTGTAAAATTCTTCCAGXXXXXXXXXXCAGAA
TTTACCAGATCAACAAAGTAGTTATGTTNCACCANCTTCACAATTAACTCNAGGTAGCTC
ANATAGTTTNTCTTGGATNAGTGAATGTGAAAATACATGTGGAGGANATTCNT
sequence update 2001. 6. 1
Translated Amino Acid sequence
IAVVEGFMAPSELCQKIKFCSSSSSTNDFDFIGSSTTDCEICTFISGYAENFLEEXKTLE
DIIKXVDDXCKILP---

---QNLPDQQSSYVXPXSQLTXGSSXSXSWXSECENTCGGXS


Translated Amino Acid sequence (All Frames)
Frame A:
llqllkdswhqvnfvkklnsvhhhhqpmisillvvvqlivkfvhlfqdmlkiswkkxkhl
ki*lkxlmxpvkffq---

---QNLPDQQSSYVXPXSQLTXGSSXSXSWXSECENTCGGXS

Frame B:
ycsc*rihgtk*tlskn*ilfiiiinq*frfyw**yn*l*nlyiyfric*kflgrkxnt*
ryn*xc**xl*nss---

---riyqinkvvmxhxlhn*lxvaxivxlgxvnvkihvexix

Frame C:
IAVVEGFMAPSELCQKIKFCSSSSSTNDFDFIGSSTTDCEICTFISGYAENFLEEXKTLE
DIIKXVDDXCKILP---

---eftrstk*lcxtxftinsr*lx*fxldx*m*kymwrxf

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB590 (VFB590Q) /CSM/VF/VFB5-D/VFB590Q.Seq.d/ 577 e-164
VFB595 (VFB595Q) /CSM/VF/VFB5-D/VFB595Q.Seq.d/ 420 e-117
VFO888 (VFO888Q) /CSM/VF/VFO8-D/VFO888Q.Seq.d/ 416 e-116
VSD249 (VSD249Q) /CSM/VS/VSD2-C/VSD249Q.Seq.d/ 174 6e-43
VFF205 (VFF205Q) /CSM/VF/VFF2-A/VFF205Q.Seq.d/ 174 6e-43
VFM211 (VFM211Q) /CSM/VF/VFM2-A/VFM211Q.Seq.d/ 167 1e-40
VSD193 (VSD193Q) /CSM/VS/VSD1-D/VSD193Q.Seq.d/ 82 6e-15
VHE144 (VHE144Q) /CSM/VH/VHE1-B/VHE144Q.Seq.d/ 42 0.006
VSF677 (VSF677Q) /CSM/VS/VSF6-D/VSF677Q.Seq.d/ 40 0.022
SSG701 (SSG701Q) /CSM/SS/SSG7-A/SSG701Q.Seq.d/ 40 0.022

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

U66367|U66367.1 Dictyostelium discoideum SapA (sapA) mRNA, partial cds. 420 e-114 1
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence. 38 0.003 4
AF361947|AF361947.1 Dictyostelium discoideum SgcA (sgcA) mRNA, complete cds. 34 0.16 3
BU809903|BU809903.1 UL63PE07 Populus leaf cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence. 46 0.29 1
AP005439|AP005439.2 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0033D24. 44 0.62 3
AC104396|AC104396.7 Mus musculus chromosome 3 clone RP23-413J8, complete sequence. 36 0.62 4
AC007176|AC007176.1 Drosophila melanogaster, chromosome 2L, region 37C1-46B2, BAC clones DS04472 and BACR48O01, complete sequence. 44 1.1 1
AC124689|AC124689.5 Mus musculus chromosome 6 clone RP24-147N6, complete sequence. 44 1.1 1
AC115215|AC115215.4 Rattus norvegicus clone CH230-97H12, WORKING DRAFT SEQUENCE, 1 ordered piece. 44 1.1 1
AV411062|AV411062.1 Lotus japonicus cDNA clone:MWM201b10_r, 5' end. 34 1.3 2
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U66367_1(U66367|pid:none) Dictyostelium discoideum SapA (sapA) m... 122 4e-27
AC006841_29(AC006841|pid:none) Arabidopsis thaliana chromosome 2... 32 6.8

protein update 2009. 2. 5
PSORT

psg: 0.75 gvh: 0.45 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.19 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
20.0 %: nuclear
12.0 %: cytoskeletal
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFB590 is cyt

5' end seq. ID VFB590F
5' end seq.
>VFB590F.Seq
TTATTGCAGTTGTTGAAGGATTCATGGCACCAAGTGAACTTTGTCAAAAAATTAAATTCT
GTTCATCATCATCATCAACCAATGATTTCGATTTTATTGGTAGTAGTACAACTGATTGTG
AAATTTGTACATTTATTTCAGGATATGCTGAAAATTTCTTGGAAGAAAANAAAACACTTG
AAGATATAATTAAAGNTGTTGATGATNCCTGTAAAATTCTTCCAG----------
Length of 5' end seq. 225
3' end seq. ID VFB590Z
3' end seq.
>VFB590Z.Seq
----------CAGAATTTACCAGATCAACAAAGTAGTTATGTTNCACCANCTTCACAATT
AACTCNAGGTAGCTCANATAGTTTNTCTTGGATNAGTGAATGTGAAAATACATGTGGAGG
ANATTCNT
Length of 3' end seq. 118
Connected seq. ID VFB590P
Connected seq.
>VFB590P.Seq
TTATTGCAGTTGTTGAAGGATTCATGGCACCAAGTGAACTTTGTCAAAAAATTAAATTCT
GTTCATCATCATCATCAACCAATGATTTCGATTTTATTGGTAGTAGTACAACTGATTGTG
AAATTTGTACATTTATTTCAGGATATGCTGAAAATTTCTTGGAAGAAAANAAAACACTTG
AAGATATAATTAAAGNTGTTGATGATNCCTGTAAAATTCTTCCAG----------CAGAA
TTTACCAGATCAACAAAGTAGTTATGTTNCACCANCTTCACAATTAACTCNAGGTAGCTC
ANATAGTTTNTCTTGGATNAGTGAATGTGAAAATACATGTGGAGGANATTCNT
Length of connected seq. 343
Full length Seq ID -
Full length Seq. -
Length of full length seq. -