VFB588
Library VF
(Link to library)
Clone ID VFB588
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15827-1
Original site URL
Representative seq. ID VFB588P
(Link to Original site)
Representative DNA sequence
>VFB588 (VFB588Q) /CSM/VF/VFB5-D/VFB588Q.Seq.d/
CACTGTTGGCCTACTGGATAGAATTTTATAAAACCGATTGTTATTATTTGTTTTTCAAAT
TTCTTATCACAAAATCTAATTTTTATTTACTCATTTATTTTCTTCCATAAAATCAAATAG
TAATAATTATTATAATCAAAAAACAAAACAAAAAAAAAAGTTTTAAATATTATTTAAAAT
AAGAAATTTCAACAATGACAACTGATAAAAAATCAAAATCAAAATCAAGNGAAAAATCAA
CACXXXXXXXXXXATTCGTACCCTTTGCGTTCACATTGGTCTCTTGATGGGTGTCGGTGG
TCATATGCAAGAACTTCGTAGAGTCCGTTCCGGTATCATGTCTGAAAAGAAGGGTCAAGT
CACCATGCATGACGTCAAAGACGCTCAATACGAATATGACAATAGCAAAGACGAATCTTA
CTTACGTCGTGTCATTCAACCATTGGAAGCAATTCTCACCAATTACAAGAGAATCGTCGT
TAAAGACTCTGCAATCAATGCCATCTGTTATGGTGCTAAACTCATGATTCCAGGTCTCTT
ACGTTATGAACAAGACATTGAATCAAACGAAGAAGTCGTTCTTATCACCACCAAAGGTGA
AGCCATCGCTATTGGTATCGCTCAAATGACCACCGCTTCAATGGCCACTTGTGATCATGG
TGTCGTTGCCACAATCAAAAGAGTTATCATGGATAGAGATGTCTATCCAGTTAGATGGGG
TCTTGGTCCAAAAGCAAAGGTCAAGAAGGAAATGATCAAAGATGGTAAATTAGACAAATT
TGGTAAACCAAATGAAAAAACTCCATCAGATTGGACCAACACTTACACCTATTACACTGG
TCAAGTTGCCACTACCACCACCACCTCCCCAGTCGAATCAATGAATGTTGATACTCCAAA
GAAAGCAACTGCCTCTGTCGCCGTTAAAGCNAAGTTGAATCATNCNAAGANAAAAACCAG
TCCCAAANAAAGAAAGAAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence
llaywiefyktdcyylffkflitksnfylliyflp*nqiviiiiikkqnkkksfkyylk*
EISTMTTDKKSKSKSXEKST---

---IRTLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQVTMHDVKDAQYEYDNSKDESYL
RRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEVVLITTKGEA
IAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMIKDGKLDKFG
KPNEKTPSDWTNTYTYYTGQVATTTTTSPVESMNVDTPKKATASVAVKAKLNHXKXKTSP
KXRKK


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptg*nfikpiviicfsnflsqnlifiysfiffhkik***ll*sknktkkkvlnii*n
kkfqq*qliknqnqnqxknqh---

---IRTLCVHIGLLMGVGGHMQELRRVRSGIMSEKKGQVTMHDVKDAQYEYDNSKDESYL
RRVIQPLEAILTNYKRIVVKDSAINAICYGAKLMIPGLLRYEQDIESNEEVVLITTKGEA
IAIGIAQMTTASMATCDHGVVATIKRVIMDRDVYPVRWGLGPKAKVKKEMIKDGKLDKFG
KPNEKTPSDWTNTYTYYTGQVATTTTTSPVESMNVDTPKKATASVAVKAKLNHXKXKTSP
KXRKK

Frame B:
tvglldril*nrlllfvfqisyhki*flfthlfssiksnsnnyynqktkqkkkf*ilfki
rnfnndn**kikikikxkin---

---fvpfaftlvs*wvsvvicknfvesvpvsclkrrvkspcmtsktlntnmtiaktnlty
vvsfnhwkqfspitresslktlqsmpsvmvlns*fqvsyvmnktlnqtkksflsppkvkp
sllvslk*pplqwplvimvslpqskelswiemsiqldgvlvqkqrsrrk*skmvn*tnlv
nqmkklhqigptltpitlvklplpppppqsnq*mlilqrkqlplsplkxs*ixxrxkpvp
xkerk

Frame C:
llaywiefyktdcyylffkflitksnfylliyflp*nqiviiiiikkqnkkksfkyylk*
EISTMTTDKKSKSKSXEKST---

---syplrshwsldgcrwsyarts*spfryhv*kegsshha*rqrrsiri*q*qrrillt
schstigsnshqlqenrr*rlcnqchllwc*thdsrsltl*trh*ikrrsrsyhhqr*sh
rywyrsndhrfnghl*swcrchnqksyhg*rclss*mgswskskgqegndqrw*irqiw*
tk*knsirldqhlhllhwsschyhhhlpsrinec*yskesnclcrr*sxvesxxxknqsq
xkke

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB588 (VFB588Q) /CSM/VF/VFB5-D/VFB588Q.Seq.d/ 1411 0.0
VFD746 (VFD746Q) /CSM/VF/VFD7-B/VFD746Q.Seq.d/ 1342 0.0
VFD801 (VFD801Q) /CSM/VF/VFD8-A/VFD801Q.Seq.d/ 1287 0.0
VFG107 (VFG107Q) /CSM/VF/VFG1-A/VFG107Q.Seq.d/ 1215 0.0
SLA614 (SLA614Q) /CSM/SL/SLA6-A/SLA614Q.Seq.d/ 1215 0.0
CHB777 (CHB777Q) /CSM/CH/CHB7-D/CHB777Q.Seq.d/ 1158 0.0
VFC387 (VFC387Q) /CSM/VF/VFC3-D/VFC387Q.Seq.d/ 1116 0.0
SLG818 (SLG818Q) /CSM/SL/SLG8-A/SLG818Q.Seq.d/ 1080 0.0
VFG375 (VFG375Q) /CSM/VF/VFG3-D/VFG375Q.Seq.d/ 1047 0.0
VFE566 (VFE566Q) /CSM/VF/VFE5-C/VFE566Q.Seq.d/ 1013 0.0

own update 2002.12.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ927873|AZ927873.1 476.dis09b05.s1 Saccharomyces castellii NRRL Y-12630 Saccharomyces castellii genomic clone 476.dis09b05.s1, DNA sequence. 72 4e-20 3
AX489105|AX489105.1 Sequence 6405 from Patent WO02053728. 86 1e-18 3
U59149|U59149.1 Candida albicans nucleolar protein CaCbf5p (CaCBF5) gene, complete cds. 86 2e-18 3
U59150|U59150.1 Sartorya fumigata nucleolar protein AfCbf5p (AfCBF5p) mRNA, complete cds. 54 9e-17 4
AZ930830|AZ930830.1 474.dhz59b02.s1 Saccharomyces unisporus NRRL Y-1556 Saccharomyces unisporus genomic clone 474.dhz59b02.s1, DNA sequence. 72 1e-15 3
BQ739552|BQ739552.1 PfESToab47d06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:NO50_CAEEL O17919 PUTATIVE NUCLEOLAR PROTEIN K01G5.5. [1] ;, mRNA sequence. 66 2e-12 2
BI814452|BI814452.1 PfESToaa22h02.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:CBF5_SCHPO O14007 CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 ;, mRNA sequence. 66 2e-12 2
BU498441|BU498441.1 PfESToab97c06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to SW:DKC1_RAT P40615 DYSKERIN ;, mRNA sequence. 66 2e-12 2
BQ989186|BQ989186.1 QGF16P20.yg.ab1 QG_EFGHJ lettuce serriola Lactuca sativa cDNA clone QGF16P20, mRNA sequence. 64 2e-09 2
AL426547|AL426547.1 clone BA0AB013E12 of library BA0AB from strain CLIB 210 of Kluyveromyces lactis. 38 2e-09 5
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9LD90) RecName: Full=H/ACA ribonucleoprotein complex subunit 4... 306 7e-82
(O14007) RecName: Full=H/ACA ribonucleoprotein complex subunit 4... 297 3e-79
BT065061_1(BT065061|pid:none) Zea mays full-length cDNA clone ZM... 293 8e-78
AK102460_1(AK102460|pid:none) Oryza sativa Japonica Group cDNA c... 290 4e-77
AM989984_18(AM989984|pid:none) Zygosaccharomyces rouxii strain C... 289 1e-76
CU928180_506(CU928180|pid:none) Kluyveromyces thermotolerans str... 288 1e-76
(O43102) RecName: Full=Centromere/microtubule-binding protein cb... 288 1e-76
AM920435_75(AM920435|pid:none) Penicillium chrysogenum Wisconsin... 287 3e-76
(O13473) RecName: Full=Centromere/microtubule-binding protein CB... 286 6e-76
BC123284_1(BC123284|pid:none) Xenopus laevis hypothetical protei... 286 1e-75
protein update 2009. 6.17
PSORT

psg: 0.41 gvh: 0.67 alm: 0.39 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.00
nuc: 0.03 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
24.0 %: nuclear
20.0 %: mitochondrial
4.0 %: extracellular, including cell wall

>> prediction for VFB588 is cyt

5' end seq. ID VFB588F
5' end seq.
>VFB588F.Seq
CACTGTTGGCCTACTGGATAGAATTTTATAAAACCGATTGTTATTATTTGTTTTTCAAAT
TTCTTATCACAAAATCTAATTTTTATTTACTCATTTATTTTCTTCCATAAAATCAAATAG
TAATAATTATTATAATCAAAAAACAAAACAAAAAAAAAAGTTTTAAATATTATTTAAAAT
AAGAAATTTCAACAATGACAACTGATAAAAAATCAAAATCAAAATCAAGNGAAAAATCAA
CAC----------
Length of 5' end seq. 243
3' end seq. ID VFB588Z
3' end seq.
>VFB588Z.Seq
----------ATTCGTACCCTTTGCGTTCACATTGGTCTCTTGATGGGTGTCGGTGGTCA
TATGCAAGAACTTCGTAGAGTCCGTTCCGGTATCATGTCTGAAAAGAAGGGTCAAGTCAC
CATGCATGACGTCAAAGACGCTCAATACGAATATGACAATAGCAAAGACGAATCTTACTT
ACGTCGTGTCATTCAACCATTGGAAGCAATTCTCACCAATTACAAGAGAATCGTCGTTAA
AGACTCTGCAATCAATGCCATCTGTTATGGTGCTAAACTCATGATTCCAGGTCTCTTACG
TTATGAACAAGACATTGAATCAAACGAAGAAGTCGTTCTTATCACCACCAAAGGTGAAGC
CATCGCTATTGGTATCGCTCAAATGACCACCGCTTCAATGGCCACTTGTGATCATGGTGT
CGTTGCCACAATCAAAAGAGTTATCATGGATAGAGATGTCTATCCAGTTAGATGGGGTCT
TGGTCCAAAAGCAAAGGTCAAGAAGGAAATGATCAAAGATGGTAAATTAGACAAATTTGG
TAAACCAAATGAAAAAACTCCATCAGATTGGACCAACACTTACACCTATTACACTGGTCA
AGTTGCCACTACCACCACCACCTCCCCAGTCGAATCAATGAATGTTGATACTCCAAAGAA
AGCAACTGCCTCTGTCGCCGTTAAAGCNAAGTTGAATCATNCNAAGANAAAAACCAGTCC
CAAANAAAGAAAGAAAG
Length of 3' end seq. 727
Connected seq. ID VFB588P
Connected seq.
>VFB588P.Seq
CACTGTTGGCCTACTGGATAGAATTTTATAAAACCGATTGTTATTATTTGTTTTTCAAAT
TTCTTATCACAAAATCTAATTTTTATTTACTCATTTATTTTCTTCCATAAAATCAAATAG
TAATAATTATTATAATCAAAAAACAAAACAAAAAAAAAAGTTTTAAATATTATTTAAAAT
AAGAAATTTCAACAATGACAACTGATAAAAAATCAAAATCAAAATCAAGNGAAAAATCAA
CAC----------ATTCGTACCCTTTGCGTTCACATTGGTCTCTTGATGGGTGTCGGTGG
TCATATGCAAGAACTTCGTAGAGTCCGTTCCGGTATCATGTCTGAAAAGAAGGGTCAAGT
CACCATGCATGACGTCAAAGACGCTCAATACGAATATGACAATAGCAAAGACGAATCTTA
CTTACGTCGTGTCATTCAACCATTGGAAGCAATTCTCACCAATTACAAGAGAATCGTCGT
TAAAGACTCTGCAATCAATGCCATCTGTTATGGTGCTAAACTCATGATTCCAGGTCTCTT
ACGTTATGAACAAGACATTGAATCAAACGAAGAAGTCGTTCTTATCACCACCAAAGGTGA
AGCCATCGCTATTGGTATCGCTCAAATGACCACCGCTTCAATGGCCACTTGTGATCATGG
TGTCGTTGCCACAATCAAAAGAGTTATCATGGATAGAGATGTCTATCCAGTTAGATGGGG
TCTTGGTCCAAAAGCAAAGGTCAAGAAGGAAATGATCAAAGATGGTAAATTAGACAAATT
TGGTAAACCAAATGAAAAAACTCCATCAGATTGGACCAACACTTACACCTATTACACTGG
TCAAGTTGCCACTACCACCACCACCTCCCCAGTCGAATCAATGAATGTTGATACTCCAAA
GAAAGCAACTGCCTCTGTCGCCGTTAAAGCNAAGTTGAATCATNCNAAGANAAAAACCAG
TCCCAAANAAAGAAAGAAAG
Length of connected seq. 970
Full length Seq ID -
Full length Seq. -
Length of full length seq. -