VFB582
Library VF
(Link to library)
Clone ID VFB582
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15950-1
Original site URL
Representative seq. ID VFB582P
(Link to Original site)
Representative DNA sequence
>VFB582 (VFB582Q) /CSM/VF/VFB5-D/VFB582Q.Seq.d/
CATCAATTCCATTTTATGAAGAATTACAAGTTGCTTCAAAATTAGAAAAATCAAATAATA
ATAATAACAATAACAAAGGTGATAAGAAATCATCTGAAGTTGAAAAATATTTAGTACATA
TTACATATCCACAATGGTTTGAATTTATTGTTAAAGATATTAATTTTTCATTACCAAGAC
AAATTGCAGTTTCAATTCCACATTATAATCTAAGAAAAGCTTATAATTCATTTAAAAAGA
GTTGGGGTGAATATATTTATGAATGTACATTTGAAACTGAATTATTTAAAGAATTAATTA
TCCGTAGTGAAAACTTTTCAAATGAAATTTTCTCACCATTTGATTCAGCTCCATTGGTAC
CAGATCAAGAAAAGAAAGCAGAAGCAACCGCTGAAGCCGTTTCAAATAGTCGTACAAGTC
GTACTGTTAAAGAATTTTTAAAATCAATCAATTGGTTACATGTTATCATTTTAATTGGTA
TTCCATTCATTGGTCTCTATGGTCTAATTAATGTAGAGTGTTCATTGAAAACATTXXXXX
XXXXXATATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATGTTCAAA
CAAGATCCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTAACGCCGATCCATGGGTT
ATGTGGCAACATAAACATTACATTAAAATCGCCACTTTTATGGGTCTCGTTTTCCCAACA
TTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGTTATTTCTACTCTGGTGTACTT
CGTCTCGTTACAGTTCAACATTCCACATTCTTGGTCAATTCATTGGCTCATTATTTAGGT
GGCTCTCCATACGATGATGAACATACTCCAAAGGATTCAGTTGTGACTGCTATATTAACA
TTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCAAATGACTATAGAAACGCTTAT
AAATTCTATCAATATGATCCAACTAAATGGTTGATCTCTGCAATGTATTATTTAGGCTTG
GCTTATGATTTGAAAACTTTCTCCAAAAATGAAATTGAAAAAGGTATGATTCAAATGCAC
CAAAAACATTTAGACGCAAAGAAACAATCAATCTATTGGGGTATCAATAAAGAAGATTAC
CATCAANACAATCGA
sequence update 2001. 6. 1
Translated Amino Acid sequence
SIPFYEELQVASKLEKSNNNNNNNKGDKKSSEVEKYLVHITYPQWFEFIVKDINFSLPRQ
IAVSIPHYNLRKAYNSFKKSWGEYIYECTFETELFKELIIRSENFSNEIFSPFDSAPLVP
DQEKKAEATAEAVSNSRTSRTVKEFLKSINWLHVIILIGIPFIGLYGLINVECSLKT---

---YSASLGFWHSHFIWLMFKQDPKKIGRANIDDLNADPWVMWQHKHYIKIATFMGLVFP
TLVAGLGWGDWAGGYFYSGVLRLVTVQHSTFLVNSLAHYLGGSPYDDEHTPKDSVVTAIL
TFGEGYHNFHHEFPNDYRNAYKFYQYDPTKWLISAMYYLGLAYDLKTFSKNEIEKGMIQM
HQKHLDAKKQSIYWGINKEDYHQXNR


Translated Amino Acid sequence (All Frames)
Frame A:
hqfhfmknykllqn*knqiiiititkvirnhlklkni*yilhihnglnlllkilifhyqd
klqfqfhiii*ekliihlkrvgvnifmnvhlklnylkn*lsvvktfqmkfshhliqlhwy
qikkrkqkqplkpfqivvqvvllknf*nqsigymlsf*lvfhslvsmv*lm*svh*kh--
-

---ifsfigflafpfhlvnvqtrskenr*skh*rp*rrsmgyvat*tlh*nrhfygsrfp
nigswfrlg*lgwwlfllwctssrysstfhilgqfigslfrwlsir**tyskgfscdcyi
niw*rls*lps*ipk*l*krl*ilsi*sn*mvdlcnvlfrlgl*fenflqk*n*krydsn
apktfrrketinllgyq*rrlpsxqs

Frame B:
insil*ritscfkirkik****q*qr**eii*s*kifstyyistmv*iyc*ry*ffitkt
ncsfnstl*skksl*fi*kelg*iyl*myi*n*ii*rinyp**klfk*nflti*fssigt
rsrkesrsnr*srfk*syksyc*rifkinqlvtcyhfnwysihwslwsn*crvfieni--
-

---YSASLGFWHSHFIWLMFKQDPKKIGRANIDDLNADPWVMWQHKHYIKIATFMGLVFP
TLVAGLGWGDWAGGYFYSGVLRLVTVQHSTFLVNSLAHYLGGSPYDDEHTPKDSVVTAIL
TFGEGYHNFHHEFPNDYRNAYKFYQYDPTKWLISAMYYLGLAYDLKTFSKNEIEKGMIQM
HQKHLDAKKQSIYWGINKEDYHQXNR

Frame C:
SIPFYEELQVASKLEKSNNNNNNNKGDKKSSEVEKYLVHITYPQWFEFIVKDINFSLPRQ
IAVSIPHYNLRKAYNSFKKSWGEYIYECTFETELFKELIIRSENFSNEIFSPFDSAPLVP
DQEKKAEATAEAVSNSRTSRTVKEFLKSINWLHVIILIGIPFIGLYGLINVECSLKT---

---iqlhwvsgipisfg*csnkiqrksveqtlttltpihglcgninitlkspllwvsfsq
hw*lv*vgviglvvistlvyfvslqfniphswsihwlii*valhtmmnilqriql*lly*
hlvkviitsimnsqmtietlinsinmiqlng*slqcii*awlmi*klspkmklkkv*fkc
tkni*tqrnnqsigvsikkitixti

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB582 (VFB582Q) /CSM/VF/VFB5-D/VFB582Q.Seq.d/ 2224 0.0
VHP282 (VHP282Q) /CSM/VH/VHP2-D/VHP282Q.Seq.d/ 1179 0.0
VFM428 (VFM428Q) /CSM/VF/VFM4-B/VFM428Q.Seq.d/ 1162 0.0
VHD470 (VHD470Q) /CSM/VH/VHD4-C/VHD470Q.Seq.d/ 1126 0.0
VHE611 (VHE611Q) /CSM/VH/VHE6-A/VHE611Q.Seq.d/ 1106 0.0
VHD210 (VHD210Q) /CSM/VH/VHD2-A/VHD210Q.Seq.d/ 1061 0.0
VHK171 (VHK171Q) /CSM/VH/VHK1-C/VHK171Q.Seq.d/ 1025 0.0
VHQ458 (VHQ458Q) /CSM/VH/VHQ4-C/VHQ458Q.Seq.d/ 1017 0.0
VHB541 (VHB541Q) /CSM/VH/VHB5-B/VHB541Q.Seq.d/ 1017 0.0
VHP465 (VHP465Q) /CSM/VH/VHP4-C/VHP465Q.Seq.d/ 1011 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 1168 0.0 4
AL033501|AL033501.1 C.albicans cosmid Ca41C10. 72 2e-08 1
AL396412|AL396412.1 T3 end of clone AR0AA030B05 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 54 1e-06 2
BM634131|BM634131.1 17000668813253 A.Gam.ad.cDNA1 Anopheles gambiae cDNA clone 19600448419669 5', mRNA sequence. 54 4e-05 2
AR016873|AR016873.1 Sequence 1 from patent US 5777201. 60 7e-05 1
Z72577|Z72577.1 S.cerevisiae chromosome VII reading frame ORF YGL055w. 60 7e-05 1
J05676|J05676.1 Saccharomyces cerevisiae delta-9 fatty acid desaturase (OLE1) gene, complete cds. 60 7e-05 1
AQ874658|AQ874658.1 V112D8 mTn-3xHA/lacZ Insertion Library, strain Y2278 Saccharomyces cerevisiae genomic 5', genomic survey sequence. 60 7e-05 1
AL392980|AL392980.1 T3 end of clone AR0AA008A11 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 44 7e-04 2
BX005351|BX005351.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-266A16. 46 0.002 7
dna update 2003. 9. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116984_117(AC116984|pid:none) Dictyostelium discoideum chromos... 426 e-118
AY576801_1(AY576801|pid:none) Hortaea werneckii putative delta-9... 273 1e-71
AP007162_283(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 271 3e-71
DQ901954_1(DQ901954|pid:none) Aureobasidium pullulans putative d... 267 6e-70
S52746(S52746;S52745) stearoyl-CoA 9-desaturase (EC 1.14.19.1) [... 266 1e-69
Y18554_1(Y18554|pid:none) Mortierella alpina ole2 gene for stear... 265 2e-69
(Q12618) RecName: Full=Acyl-CoA desaturase; EC=1.14.19.... 265 3e-69
AM920435_140(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 261 4e-68
AF085500_1(AF085500|pid:none) Mortierella alpina delta nine desa... 258 2e-67
AP007151_392(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 258 2e-67
protein update 2009. 6.17
PSORT

psg: 0.75 gvh: 0.26 alm: 0.25 top: 0.40 tms: 0.13 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

28.0 %: plasma membrane
28.0 %: endoplasmic reticulum
20.0 %: mitochondrial
8.0 %: extracellular, including cell wall
8.0 %: nuclear
4.0 %: Golgi
4.0 %: vesicles of secretory system

>> prediction for VFB582 is pla

5' end seq. ID VFB582F
5' end seq.
>VFB582F.Seq
CATCAATTCCATTTTATGAAGAATTACAAGTTGCTTCAAAATTAGAAAAATCAAATAATA
ATAATAACAATAACAAAGGTGATAAGAAATCATCTGAAGTTGAAAAATATTTAGTACATA
TTACATATCCACAATGGTTTGAATTTATTGTTAAAGATATTAATTTTTCATTACCAAGAC
AAATTGCAGTTTCAATTCCACATTATAATCTAAGAAAAGCTTATAATTCATTTAAAAAGA
GTTGGGGTGAATATATTTATGAATGTACATTTGAAACTGAATTATTTAAAGAATTAATTA
TCCGTAGTGAAAACTTTTCAAATGAAATTTTCTCACCATTTGATTCAGCTCCATTGGTAC
CAGATCAAGAAAAGAAAGCAGAAGCAACCGCTGAAGCCGTTTCAAATAGTCGTACAAGTC
GTACTGTTAAAGAATTTTTAAAATCAATCAATTGGTTACATGTTATCATTTTAATTGGTA
TTCCATTCATTGGTCTCTATGGTCTAATTAATGTAGAGTGTTCATTGAAAACATT-----
-----
Length of 5' end seq. 535
3' end seq. ID VFB582Z
3' end seq.
>VFB582Z.Seq
----------ATATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATGT
TCAAACAAGATCCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTAACGCCGATCCAT
GGGTTATGTGGCAACATAAACATTACATTAAAATCGCCACTTTTATGGGTCTCGTTTTCC
CAACATTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGTTATTTCTACTCTGGTG
TACTTCGTCTCGTTACAGTTCAACATTCCACATTCTTGGTCAATTCATTGGCTCATTATT
TAGGTGGCTCTCCATACGATGATGAACATACTCCAAAGGATTCAGTTGTGACTGCTATAT
TAACATTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCAAATGACTATAGAAACG
CTTATAAATTCTATCAATATGATCCAACTAAATGGTTGATCTCTGCAATGTATTATTTAG
GCTTGGCTTATGATTTGAAAACTTTCTCCAAAAATGAAATTGAAAAAGGTATGATTCAAA
TGCACCAAAAACATTTAGACGCAAAGAAACAATCAATCTATTGGGGTATCAATAAAGAAG
ATTACCATCAANACAATCGA
Length of 3' end seq. 610
Connected seq. ID VFB582P
Connected seq.
>VFB582P.Seq
CATCAATTCCATTTTATGAAGAATTACAAGTTGCTTCAAAATTAGAAAAATCAAATAATA
ATAATAACAATAACAAAGGTGATAAGAAATCATCTGAAGTTGAAAAATATTTAGTACATA
TTACATATCCACAATGGTTTGAATTTATTGTTAAAGATATTAATTTTTCATTACCAAGAC
AAATTGCAGTTTCAATTCCACATTATAATCTAAGAAAAGCTTATAATTCATTTAAAAAGA
GTTGGGGTGAATATATTTATGAATGTACATTTGAAACTGAATTATTTAAAGAATTAATTA
TCCGTAGTGAAAACTTTTCAAATGAAATTTTCTCACCATTTGATTCAGCTCCATTGGTAC
CAGATCAAGAAAAGAAAGCAGAAGCAACCGCTGAAGCCGTTTCAAATAGTCGTACAAGTC
GTACTGTTAAAGAATTTTTAAAATCAATCAATTGGTTACATGTTATCATTTTAATTGGTA
TTCCATTCATTGGTCTCTATGGTCTAATTAATGTAGAGTGTTCATTGAAAACATT-----
-----ATATTCAGCTTCATTGGGTTTCTGGCATTCCCATTTCATTTGGTTAATGTTCAAA
CAAGATCCAAAGAAAATCGGTAGAGCAAACATTGACGACCTTAACGCCGATCCATGGGTT
ATGTGGCAACATAAACATTACATTAAAATCGCCACTTTTATGGGTCTCGTTTTCCCAACA
TTGGTAGCTGGTTTAGGTTGGGGTGATTGGGCTGGTGGTTATTTCTACTCTGGTGTACTT
CGTCTCGTTACAGTTCAACATTCCACATTCTTGGTCAATTCATTGGCTCATTATTTAGGT
GGCTCTCCATACGATGATGAACATACTCCAAAGGATTCAGTTGTGACTGCTATATTAACA
TTTGGTGAAGGTTATCATAACTTCCATCATGAATTCCCAAATGACTATAGAAACGCTTAT
AAATTCTATCAATATGATCCAACTAAATGGTTGATCTCTGCAATGTATTATTTAGGCTTG
GCTTATGATTTGAAAACTTTCTCCAAAAATGAAATTGAAAAAGGTATGATTCAAATGCAC
CAAAAACATTTAGACGCAAAGAAACAATCAATCTATTGGGGTATCAATAAAGAAGATTAC
CATCAANACAATCGA
Length of connected seq. 1145
Full length Seq ID -
Full length Seq. -
Length of full length seq. -