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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB568
Library VF
(Link to library)
Clone ID VFB568
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U02062-1|Contig-U11831-1
Original site URL
Representative seq. ID VFB568P
(Link to Original site)
Representative DNA sequence 
>VFB568 (VFB568Q) /CSM/VF/VFB5-C/VFB568Q.Seq.d/
AAAAATTTTTGGGTGGCAAAAATAAAATTTCAATTACCAAATGAAAAAGAAGATATAATT
AAAATTTGGGAATACTTTAATAAACACTCCTTTAAACAAATGATACCAAATTATGATATT
CTCATTGAATTCCTTTCAAGTGTAACAAATATTATTCCACCTTTAGAATTGAAAATATCT
AATATTAAAGAGCCACTATCTGGAAAACTTGGAACAATTCTATTAATGCAATTATATAAA
AAGAATTTAAATGTAATTGAATTATTATTAAAAAGTTTTGATAATTTTAATTTTATACAT
CAACCAGAACAAATGTCAGCTATTGTAGATAAAGAGAGAAATTTATTTCATATTTCTGGC
GAATTATTCCAAGTTGATAAAAAGTTTAGTTTTCAAATAATCAGAATAATTAAATTGATA
ATGGACAAGTTTAATAAACTCACTAAAGATCAAATCAATATTGAAAATATTTCAACAACA
ACATATCGCCTCTTTTTAAATTATTTATATGATCAATTACTTAGAGTTXXXXXXXXXXTT
GATCAATTAGAATATGTTAGATCAATTATTCCTGAACAATTATTAAATAATAATTTTGAA
ACCTATCGTATCTTTTTCTATCTTAATATCAGATCCTCAAAATTATCAAATTACCTAATC
AAAAGACCTGGAATTACATATTTTATTCGAAATTCAACTGAACTCCTTTATAATAATTTC
TACAATACTGCTGAACCAATTACAGATGAAATTATTGGTTTTGATTTAAGAAAATATTTA
AATTTTGAATTATTCACATATGATTATATATTAGGTAGAGAATTAAATCAATATAATAAT
AGTGGTTGTAGTGGTTGTAGTGGTTGTAGTAGTAGTAGTAGTAGTAGCAGTAGTAGTGGC
GGTGATGATGGTAGAAAAAATAATAAAAAGTATATAACTCAATTCGATACAATATTAAAA
GAATTAATTAAACAATTATCATTCAATATTTGTACCAACTTTAGTGATAGAGATGAAATT
GTTTATGGTAAAGATTTCTTTAATCATTCATTAAATGCAGATTTTAAATTCAGTTTAGAT
ATTGGTAGAAAAGATTTATTTTGGGAATTATTGATTGGATTCAACAATATATGATTAAAA
ATGAAAATTTAAGAAACTTCAAGTTTATCAATTCAATTCACCATANAATCATTATTACCA
A
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KNFWVAKIKFQLPNEKEDIIKIWEYFNKHSFKQMIPNYDILIEFLSSVTNIIPPLELKIS
NIKEPLSGKLGTILLMQLYKKNLNVIELLLKSFDNFNFIHQPEQMSAIVDKERNLFHISG
ELFQVDKKFSFQIIRIIKLIMDKFNKLTKDQINIENISTTTYRLFLNYLYDQLLRV---

---DQLEYVRSIIPEQLLNNNFETYRIFFYLNIRSSKLSNYLIKRPGITYFIRNSTELLY
NNFYNTAEPITDEIIGFDLRKYLNFELFTYDYILGRELNQYNNSGCSGCSGCSSSSSSSS
SSGGDDGRKNNKKYITQFDTILKELIKQLSFNICTNFSDRDEIVYGKDFFNHSLNADFKF
SLDIGRKDLFWELLIGFNNI*lkmki*etsslsiqftixsllp
Translated Amino Acid sequence (All Frames) 
Frame A:
KNFWVAKIKFQLPNEKEDIIKIWEYFNKHSFKQMIPNYDILIEFLSSVTNIIPPLELKIS
NIKEPLSGKLGTILLMQLYKKNLNVIELLLKSFDNFNFIHQPEQMSAIVDKERNLFHISG
ELFQVDKKFSFQIIRIIKLIMDKFNKLTKDQINIENISTTTYRLFLNYLYDQLLRV---

---lin*nmldqlflnny*iiilkpivsfsilisdpqnyqit*skdlelhilfeiqlnsf
iiistillnqlqmkllvli*eni*ilnyshmiiy*ven*iniiivvvvvvvvvvvvvvva
vvvavmmvekiiksi*lnsiqy*kn*lnnyhsifvptlviemklfmvkisliih*mqiln
sv*ilvekiyfgny*ldstiyd*k*kfkklqvyqfnspxnhyyq

Frame B:
kifgwqk*nfnyqmkkki*lkfgntlintplnk*yqimifslnsfqv*qilfhl*n*kyl
ilkshylenleqfy*cnyikri*m*lnyy*kvliililyinqnkcqll*ikreiyfifla
nysklikslvfk*se*ln**wtslinslkiksilkifqqqhiasf*iiyminyle---

---*siric*inys*tiik**f*nlsylfls*yqilkiiklpnqktwnyifyskfn*tpl
**flqyc*tnyr*nywf*fkkifkf*iihi*lyir*riksi***wl*wl*wl*******q
**wr**w*kk**kvynsirynikrin*tiiiqylyql***r*nclw*rfl*sfikcrf*i
qfryw*krfilgiidwiqqymiknenlrnfkfinsihhxiiit

Frame C:
kflggknkisitk*krryn*nlgil**tll*tndtkl*ysh*ipfkcnkyystfrieni*
y*ratiwktwnnsinaii*kefkcn*iiikkf**f*fytstrtnvsycr*rekfisyfwr
iips**kv*fsnnqnn*idngqv**th*rsnqy*kyfnnnisplfklfi*sit*s---

---DQLEYVRSIIPEQLLNNNFETYRIFFYLNIRSSKLSNYLIKRPGITYFIRNSTELLY
NNFYNTAEPITDEIIGFDLRKYLNFELFTYDYILGRELNQYNNSGCSGCSGCSSSSSSSS
SSGGDDGRKNNKKYITQFDTILKELIKQLSFNICTNFSDRDEIVYGKDFFNHSLNADFKF
SLDIGRKDLFWELLIGFNNI*lkmki*etsslsiqftixsllp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB568 (VFB568Q) /CSM/VF/VFB5-C/VFB568Q.Seq.d/                       1475   0.0
CHL343 (CHL343Q) /CSM/CH/CHL3-B/CHL343Q.Seq.d/                        274   3e-72
VFC763 (VFC763Q) /CSM/VF/VFC7-C/VFC763Q.Seq.d/                        101   2e-20
VSH518 (VSH518Q) /CSM/VS/VSH5-A/VSH518Q.Seq.d/                         44   0.005
VFH449 (VFH449Q) /CSM/VF/VFH4-C/VFH449Q.Seq.d/                         40   0.077
SSG110 (SSG110Q) /CSM/SS/SSG1-A/SSG110Q.Seq.d/                         40   0.077
SFC571 (SFC571Q) /CSM/SF/SFC5-C/SFC571Q.Seq.d/                         40   0.077
AFK382 (AFK382Q) /CSM/AF/AFK3-D/AFK382Q.Seq.d/                         40   0.077
VSJ772 (VSJ772Q) /CSM/VS/VSJ7-C/VSJ772Q.Seq.d/                         38   0.30
VSH167 (VSH167Q) /CSM/VS/VSH1-C/VSH167Q.Seq.d/                         38   0.30
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116922|AC116922.1 Dictyostelium discoideum chromosome 2 map 4969700-4990227 strain AX4, *** SEQUENCING IN PROGRESS ***.   920  0.0  10
AC115608|AC115608.2 Dictyostelium discoideum chromosome 2 map 6061442-6097630 strain AX4, complete sequence.   920  0.0  10
AC115681|AC115681.2 Dictyostelium discoideum chromosome 2 map 6097680-6105897 strain AX4, complete sequence.   357  0.0  14
AC115683|AC115683.2 Dictyostelium discoideum chromosome 2 map complement(6135149-6105997) strain AX4, complete sequence.   291  0.0  13
AC116985|AC116985.2 Dictyostelium discoideum chromosome 2 map 6135249-6143598 strain AX4, complete sequence.   131  e-121  10
AC116918|AC116918.3 Dictyostelium discoideum chromosome 2 map 6143698-6163521 strain AX4, complete sequence.   149  e-114  12
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    40  9e-07  17
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    34  3e-06  16
AF165818|AF165818.4 Guillardia theta nucleomorph chromosome 1, complete sequence.    40  6e-06  14
AE014834|AE014834.1 Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete sequence.    34  7e-06  13
dna update 2003. 9. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116922_12(AC116922|pid:none) Dictyostelium discoideum chromoso...   565   e-163
AC116922_10(AC116922|pid:none) Dictyostelium discoideum chromoso...   551   e-159
AC116922_7(AC116922|pid:none) Dictyostelium discoideum chromosom...   541   e-155
AC115579_3(AC115579|pid:none) Dictyostelium discoideum chromosom...   524   e-150
AC115683_4(AC115683|pid:none) Dictyostelium discoideum chromosom...   456   e-130
AC115683_2(AC115683|pid:none) Dictyostelium discoideum chromosom...   321   3e-90
AC116985_1(AC116985|pid:none) Dictyostelium discoideum chromosom...   269   6e-73
AC115579_2(AC115579|pid:none) Dictyostelium discoideum chromosom...   252   3e-69
AC116977_3(AC116977|pid:none) Dictyostelium discoideum chromosom...   102   4e-20
AC116924_12(AC116924|pid:none) Dictyostelium discoideum chromoso...    74   1e-11
protein update 2009. 6.17
PSORT 

 psg: 0.47  gvh: 0.41  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 40.0 %: cytoplasmic
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for VFB568 is nuc
5' end seq. ID VFB568F
5' end seq. 
>VFB568F.Seq
AAAAATTTTTGGGTGGCAAAAATAAAATTTCAATTACCAAATGAAAAAGAAGATATAATT
AAAATTTGGGAATACTTTAATAAACACTCCTTTAAACAAATGATACCAAATTATGATATT
CTCATTGAATTCCTTTCAAGTGTAACAAATATTATTCCACCTTTAGAATTGAAAATATCT
AATATTAAAGAGCCACTATCTGGAAAACTTGGAACAATTCTATTAATGCAATTATATAAA
AAGAATTTAAATGTAATTGAATTATTATTAAAAAGTTTTGATAATTTTAATTTTATACAT
CAACCAGAACAAATGTCAGCTATTGTAGATAAAGAGAGAAATTTATTTCATATTTCTGGC
GAATTATTCCAAGTTGATAAAAAGTTTAGTTTTCAAATAATCAGAATAATTAAATTGATA
ATGGACAAGTTTAATAAACTCACTAAAGATCAAATCAATATTGAAAATATTTCAACAACA
ACATATCGCCTCTTTTTAAATTATTTATATGATCAATTACTTAGAGTT----------
Length of 5' end seq. 528
3' end seq. ID VFB568Z
3' end seq. 
>VFB568Z.Seq
----------TTGATCAATTAGAATATGTTAGATCAATTATTCCTGAACAATTATTAAAT
AATAATTTTGAAACCTATCGTATCTTTTTCTATCTTAATATCAGATCCTCAAAATTATCA
AATTACCTAATCAAAAGACCTGGAATTACATATTTTATTCGAAATTCAACTGAACTCCTT
TATAATAATTTCTACAATACTGCTGAACCAATTACAGATGAAATTATTGGTTTTGATTTA
AGAAAATATTTAAATTTTGAATTATTCACATATGATTATATATTAGGTAGAGAATTAAAT
CAATATAATAATAGTGGTTGTAGTGGTTGTAGTGGTTGTAGTAGTAGTAGTAGTAGTAGC
AGTAGTAGTGGCGGTGATGATGGTAGAAAAAATAATAAAAAGTATATAACTCAATTCGAT
ACAATATTAAAAGAATTAATTAAACAATTATCATTCAATATTTGTACCAACTTTAGTGAT
AGAGATGAAATTGTTTATGGTAAAGATTTCTTTAATCATTCATTAAATGCAGATTTTAAA
TTCAGTTTAGATATTGGTAGAAAAGATTTATTTTGGGAATTATTGATTGGATTCAACAAT
ATATGATTAAAAATGAAAATTTAAGAAACTTCAAGTTTATCAATTCAATTCACCATANAA
TCATTATTACCAA
Length of 3' end seq. 663
Connected seq. ID VFB568P
Connected seq. 
>VFB568P.Seq
AAAAATTTTTGGGTGGCAAAAATAAAATTTCAATTACCAAATGAAAAAGAAGATATAATT
AAAATTTGGGAATACTTTAATAAACACTCCTTTAAACAAATGATACCAAATTATGATATT
CTCATTGAATTCCTTTCAAGTGTAACAAATATTATTCCACCTTTAGAATTGAAAATATCT
AATATTAAAGAGCCACTATCTGGAAAACTTGGAACAATTCTATTAATGCAATTATATAAA
AAGAATTTAAATGTAATTGAATTATTATTAAAAAGTTTTGATAATTTTAATTTTATACAT
CAACCAGAACAAATGTCAGCTATTGTAGATAAAGAGAGAAATTTATTTCATATTTCTGGC
GAATTATTCCAAGTTGATAAAAAGTTTAGTTTTCAAATAATCAGAATAATTAAATTGATA
ATGGACAAGTTTAATAAACTCACTAAAGATCAAATCAATATTGAAAATATTTCAACAACA
ACATATCGCCTCTTTTTAAATTATTTATATGATCAATTACTTAGAGTT----------TT
GATCAATTAGAATATGTTAGATCAATTATTCCTGAACAATTATTAAATAATAATTTTGAA
ACCTATCGTATCTTTTTCTATCTTAATATCAGATCCTCAAAATTATCAAATTACCTAATC
AAAAGACCTGGAATTACATATTTTATTCGAAATTCAACTGAACTCCTTTATAATAATTTC
TACAATACTGCTGAACCAATTACAGATGAAATTATTGGTTTTGATTTAAGAAAATATTTA
AATTTTGAATTATTCACATATGATTATATATTAGGTAGAGAATTAAATCAATATAATAAT
AGTGGTTGTAGTGGTTGTAGTGGTTGTAGTAGTAGTAGTAGTAGTAGCAGTAGTAGTGGC
GGTGATGATGGTAGAAAAAATAATAAAAAGTATATAACTCAATTCGATACAATATTAAAA
GAATTAATTAAACAATTATCATTCAATATTTGTACCAACTTTAGTGATAGAGATGAAATT
GTTTATGGTAAAGATTTCTTTAATCATTCATTAAATGCAGATTTTAAATTCAGTTTAGAT
ATTGGTAGAAAAGATTTATTTTGGGAATTATTGATTGGATTCAACAATATATGATTAAAA
ATGAAAATTTAAGAAACTTCAAGTTTATCAATTCAATTCACCATANAATCATTATTACCA
A
Length of connected seq. 1191
Full length Seq ID -
Full length Seq. -
Length of full length seq. -