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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM181
Library AF
(Link to library)
Clone ID AFM181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM181P
(Link to Original site)
Representative DNA sequence 
>AFM181 (AFM181Q) /CSM/AF/AFM1-D/AFM181Q.Seq.d/
ATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATATTG
TAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCAT
TTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTG
TCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAA
TTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATA
TTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATG
TTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACA
GTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACT
CATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAAAATGGT
TTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCATCTTTTAAT
ATTGAAAAAGAGXXXXXXXXXXGCTCAACAAGGTTNTCAAGCATGGAAANAAGGTGTCAA
TNAGATTGGTGATGATATCGCCAATACTGCNCATNATGTAGGTGATGGTTTNGCCAATAC
TGCACGTNAAGTAGGTGATGGAATTANAATCCCTGCANAGGAGGGATATGAACTCATTAA
ANATGGAGCTNAANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTAATTTAAATTNA
AAAAGCCCAACAAAGAATGGCTGAACAANAANAAANAANAAGGTTNATGCAANAANAAAG
TNAAANAAGACGATTGCAAANAAACANANAAAGACAANAGCCNATTAGA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
iynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqviciplliifghviv
sltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdetm
limislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQYDTAYPDENG
LGWDILASFYNMDINAPSFNIEKE---

---AQQGXQAWKXGVNXIGDDIANTAHXVGDGXANTARXVGDGIXIPAXEGYELIKXGAX
XTWVXKY*rlsli*ixkaqqrmaeqxxxxrxmqxxsxxrrlqxnxxrqxpir
Translated Amino Acid sequence (All Frames) 
Frame A:
iynlislif*wqn*k*lfil**ffvvvsnflldtkrrllhfihlqviciplliifghviv
sltktvdsvhlnaimpvsmqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdetm
limislcvicvsqhwmimvtvtk*HPLNKLSFTNSKLNSTHGITLGFDPQYDTAYPDENG
LGWDILASFYNMDINAPSFNIEKE---

---AQQGXQAWKXGVNXIGDDIANTAHXVGDGXANTARXVGDGIXIPAXEGYELIKXGAX
XTWVXKY*rlsli*ixkaqqrmaeqxxxxrxmqxxsxxrrlqxnxxrqxpir

Frame B:
yti*fh*ffngktknnylycnnfl**ypiffwirkgdcfilstsr*fashys*flgm**c
h*pkrwirst*mq*crylcnfldrq*dhrr**ihastilywkihyrcsr*nc*sq*tkpc
***fhcvlyafpsig*lwlq*qsntr*tsspspiqnsiqlmg*psvlihsmilliqmkmv
wdgislhlfiiwismlhllilkk---

---lnkvxkhgxkvsxrlvmispilxxm*vmvxpilhvk*vmelxslxrrdmnslxmelx
klgxxnikgyp*fkxkkpnkewlnxxkxxgxcxxkvkxddckxtxkdxsxl

Frame C:
iqfnfinflmaklkiiiyiviifcssiqfsfgyekaiasfypppgdlhptthnfwacnsv
inqnggfgplecnnagiyaifstaneiidgneymlplfyigrstidvrdriadhsrrnhv
dndfivcymrfpalddygysnkvtpveqallhqfktqfnswdnprf*stv*yclsr*kwf
gmgypcifl*ygyqcsif*y*kr---

---strxssmexrcqxdw**yrqycxxcr*wfxqyctxsr*wnxnpcxggi*th*xwsxx
nlgxxilkvilnlnxksptkng*txxxxkvxaxxkxxktiaxkxxktxax*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM181 (AFM181Q) /CSM/AF/AFM1-D/AFM181Q.Seq.d/                       1564   0.0
SFK115 (SFK115Q) /CSM/SF/SFK1-A/SFK115Q.Seq.d/                       1213   0.0
SFJ550 (SFJ550Q) /CSM/SF/SFJ5-C/SFJ550Q.Seq.d/                       1213   0.0
SFG762 (SFG762Q) /CSM/SF/SFG7-C/SFG762Q.Seq.d/                       1213   0.0
SFG737 (SFG737Q) /CSM/SF/SFG7-B/SFG737Q.Seq.d/                       1213   0.0
SFD458 (SFD458Q) /CSM/SF/SFD4-C/SFD458Q.Seq.d/                       1213   0.0
CFG396 (CFG396Q) /CSM/CF/CFG3-D/CFG396Q.Seq.d/                       1213   0.0
CFG185 (CFG185Q) /CSM/CF/CFG1-D/CFG185Q.Seq.d/                       1213   0.0
CFG160 (CFG160Q) /CSM/CF/CFG1-C/CFG160Q.Seq.d/                       1213   0.0
AFO704 (AFO704Q) /CSM/AF/AFO7-A/AFO704Q.Seq.d/                       1213   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ396436) Dictyostelium discoideum cDNA clone:dds42m22, 5' ...  1068   0.0    1
(BJ391012) Dictyostelium discoideum cDNA clone:dds14l15, 5' ...  1068   0.0    1
(BJ390948) Dictyostelium discoideum cDNA clone:dds14j09, 5' ...  1068   0.0    1
(BJ390924) Dictyostelium discoideum cDNA clone:dds14c12, 5' ...  1068   0.0    1
(BJ390754) Dictyostelium discoideum cDNA clone:dds23j13, 5' ...  1068   0.0    1
(BJ390423) Dictyostelium discoideum cDNA clone:dds22j09, 5' ...  1068   0.0    1
(BJ390414) Dictyostelium discoideum cDNA clone:dds22h07, 5' ...  1068   0.0    1
(BJ390195) Dictyostelium discoideum cDNA clone:dds21a17, 5' ...  1068   0.0    1
(BJ390099) Dictyostelium discoideum cDNA clone:dds21m03, 5' ...  1068   0.0    1
(BJ389902) Dictyostelium discoideum cDNA clone:dds20c13, 5' ...  1068   0.0    1
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116551_24(AC116551|pid:none) Dictyostelium discoideum chromoso...    39   0.19
AC117081_63(AC117081|pid:none) Dictyostelium discoideum chromoso...    35   3.5
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM181 is

5' end seq. ID AFM181F
5' end seq. 
>AFM181F.Seq
ATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATATTG
TAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCAT
TTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTG
TCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAA
TTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATA
TTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATG
TTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACA
GTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACT
CATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAAAATGGT
TTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCATCTTTTAAT
ATTGAAAAAGAGXXXXXXXXXX
Length of 5' end seq. 622
3' end seq. ID AFM181Z
3' end seq. 
>AFM181Z.Seq
XXXXXXXXXXGCTCAACAAGGTTNTCAAGCATGGAAANAAGGTGTCAATNAGATTGGTGA
TGATATCGCCAATACTGCNCATNATGTAGGTGATGGTTTNGCCAATACTGCACGTNAAGT
AGGTGATGGAATTANAATCCCTGCANAGGAGGGATATGAACTCATTAAANATGGAGCTNA
ANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTAATTTAAATTNAAAAAGCCCAACA
AAGAATGGCTGAACAANAANAAANAANAAGGTTNATGCAANAANAAAGTNAAANAAGACG
ATTGCAAANAAACANANAAAGACAANAGCCNATTAGA
Length of 3' end seq. 337
Connected seq. ID AFM181P
Connected seq. 
>AFM181P.Seq
ATATACAATTTAATTTCATTAATTTTTTAATGGCAAAACTAAAAATAATTATTTATATTG
TAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGATTGCTTCAT
TTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATGTAATAGTG
TCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTATCTATGCAA
TTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACTATTTTATA
TTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACGAAACCATG
TTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTATGGTTACA
GTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCAATTCAACT
CATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATGAAAATGGT
TTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCATCTTTTAAT
ATTGAAAAAGAG----------GCTCAACAAGGTTNTCAAGCATGGAAANAAGGTGTCAA
TNAGATTGGTGATGATATCGCCAATACTGCNCATNATGTAGGTGATGGTTTNGCCAATAC
TGCACGTNAAGTAGGTGATGGAATTANAATCCCTGCANAGGAGGGATATGAACTCATTAA
ANATGGAGCTNAANAAACTTGGGTNAANAAATATTAAAGGTTATCCTTAATTTAAATTNA
AAAAGCCCAACAAAGAATGGCTGAACAANAANAAANAANAAGGTTNATGCAANAANAAAG
TNAAANAAGACGATTGCAAANAAACANANAAAGACAANAGCCNATTAGA
Length of connected seq. 939
Full length Seq ID -
Full length Seq. -
Length of full length seq. -