VFB552
Library VF
(Link to library)
Clone ID VFB552
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16480-1
Original site URL
Representative seq. ID VFB552P
(Link to Original site)
Representative DNA sequence
>VFB552 (VFB552Q) /CSM/VF/VFB5-C/VFB552Q.Seq.d/
AAAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATT
AGTATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAA
ATTCAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGG
AACAACATTAAATATTACATTTGATTTTACAACATCATATGCACAAAATACACAATTTGC
TGCACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTATT
TGATCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATAT
TGGTAATATTCAAGCAAATGGTGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCC
AAATATTAAAGATGATGCCAATTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAG
TTATGATTGTTCAGATCCAAGTAAATCAGTAATTGGTGATATGATTAGTXXXXXXXXXXG
GTGTCANCACTGCATCATCCTATTCAAATTTAGAGAATGCAATTGGTTTAGCAGTAGTTT
ACAATACTACCATCACCAAAGGTGATTACATTGAAGGTAGAGTTTTATTCAAAGCACTCA
ATTCTTCATTCATTCAAGTATCTGCTAAAGTTTCCGGTTTATCTTATCAAGCTCATGGTT
TCCATGTTCATCAATTTGGTGATGTTTCATCGGATAATGGTACTTCAATTGGTGGTCATT
TCTTAAAGACTGGTCAAGAACATTCTCTCCCACCATCTGGAACTAGACATTATGGTGATT
TTGGTAATTTCTGTGCTTTCTCTCAAGATATGATGGATACTGGTTACTATTATTATGAGA
CTGATCATGTCACTGCCGCTTTAGTCATTGGTANAGGTATGGCCGTTCATAACTTTACTG
ATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTGTCATTGCTTTAATTC
AAGATGCTGATTACAGTTTAAATCTTCCAATGGATTGNAAATGGGATGTCATTTGTGCAA
ATGGTTCATACTATGGTGATA
sequence update 2001. 6. 1
Translated Amino Acid sequence
klqsd*lfisk*KMRLLSVLVFLISVISIAKADYQYAFCKFNELSIGGVEGIAHLLSTDG
TTLNITFDFTTSYAQNTQFAAQILTYGYNPSSMTNLGSVFDPTNVKTAGCPSGTPRAGDI
GNIQANGGNVEAQTISLNIPNIKDDANSIIGRSIAIYGGSYDCSDPSKSVIGDMIS---

---GVXTASSYSNLENAIGLAVVYNTTITKGDYIEGRVLFKALNSSFIQVSAKVSGLSYQ
AHGFHVHQFGDVSSDNGTSIGGHFLKTGQEHSLPPSGTRHYGDFGNFCAFSQDMMDTGYY
YYETDHVTAALVIGXGMAVHNFTDKGNSDVGGSRCGQGVIALIQDADYSLNLPMDXKWDV
ICANGSYYGD


Translated Amino Acid sequence (All Frames)
Frame A:
kvtv*liiylkiknetficisifdfsyfhcksrlpicfl*iq*iinwwc*rycssfky*w
nnikyyi*fyniictkyticctnfniwl*siindqfrkci*snqckdsrmskwnttcr*y
w*ysskww*c*stnnfikhsky*r*cqfnywsfncnlww*l*lfrsk*isnw*yd*---

---GVXTASSYSNLENAIGLAVVYNTTITKGDYIEGRVLFKALNSSFIQVSAKVSGLSYQ
AHGFHVHQFGDVSSDNGTSIGGHFLKTGQEHSLPPSGTRHYGDFGNFCAFSQDMMDTGYY
YYETDHVTAALVIGXGMAVHNFTDKGNSDVGGSRCGQGVIALIQDADYSLNLPMDXKWDV
ICANGSYYGD

Frame B:
klqsd*lfisk*KMRLLSVLVFLISVISIAKADYQYAFCKFNELSIGGVEGIAHLLSTDG
TTLNITFDFTTSYAQNTQFAAQILTYGYNPSSMTNLGSVFDPTNVKTAGCPSGTPRAGDI
GNIQANGGNVEAQTISLNIPNIKDDANSIIGRSIAIYGGSYDCSDPSKSVIGDMIS---

---vsxlhhpiqi*rmqlv*q*ftilpspkvitlkvefyskhsilhsfkyllkfpvylik
lmvsmfinlvmfhrimvlqlvvis*rlvknilshhleldimvilvisvlslki*wilvti
imrlimslpl*slvxvwpfitllikvivmlvvlvvvkvsll*fkmlitv*ifqwixngms
fvqmvhtmvi

Frame C:
syslidylsqnkk*dfyly*yf*fqlfplqkpitnmlfvnsmnyqlvvlkvllif*vlme
qh*ilhlilqhhmhkihnllhkf*hmviihhq*pi*evyliqpm*rqqdvqvehhvqvil
vifkqmvvmlkhkqfh*tfqilkmmpiqllvvqlqsmvvvmivqiqvnq*lvi*l---

---cxhciilfkfrecnwfssslqyyhhqr*lh*r*sfiqstqffihssic*sfrfilss
swfpcssiw*cfig*wyfnwwsflkdwsrtfsptiwn*tlw*fw*flcflsrydgywlll
l*d*schcrfshwxrygrs*ly**r***cwwfslwsrchcfnsrc*lqfkssnglxmgch
lckwfilw*

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VHN778 (VHN778Q) /CSM/VH/VHN7-D/VHN778Q.Seq.d/ 1096 0.0
VHK773 (VHK773Q) /CSM/VH/VHK7-D/VHK773Q.Seq.d/ 1096 0.0
VFO783 (VFO783Q) /CSM/VF/VFO7-D/VFO783Q.Seq.d/ 1096 0.0
VFM834 (VFM834Q) /CSM/VF/VFM8-B/VFM834Q.Seq.d/ 1096 0.0
VFL863 (VFL863Q) /CSM/VF/VFL8-C/VFL863Q.Seq.d/ 1096 0.0
VFL780 (VFL780Q) /CSM/VF/VFL7-D/VFL780Q.Seq.d/ 1096 0.0
VFL327 (VFL327Q) /CSM/VF/VFL3-B/VFL327Q.Seq.d/ 1096 0.0
VFL248 (VFL248Q) /CSM/VF/VFL2-B/VFL248Q.Seq.d/ 1096 0.0
VFJ439 (VFJ439Q) /CSM/VF/VFJ4-B/VFJ439Q.Seq.d/ 1096 0.0
VFJ228 (VFJ228Q) /CSM/VF/VFJ2-B/VFJ228Q.Seq.d/ 1096 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BM394361|BM394361.1 50072-2-3-D09.f.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence. 54 0.004 1
BM392933|BM392933.1 50071-2-3-D09.f.1 Chilcoat/Turkewitz cDNA (small fraction) Tetrahymena thermophila cDNA, mRNA sequence. 54 0.004 1
BU794891|SODC_SCHMA SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence. 52 0.015 1
BU724417|SODC_SCHMA SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence. 52 0.015 1
BU722666|SODC_SCHMA SUPEROXIDE DISMUTASE [CU-ZN], mRNA sequence. 52 0.015 1
AF046872|AF046872.1 Candida albicans Cu,Zn-superoxide dismutase (sod1) gene, complete cds. 46 0.94 1
BX571969|BX571969.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-93P1. 46 0.94 1
AC087425|AC087425.2 Oryza sativa chromosome 5 clone P0676G05, complete sequence. 40 1.0 7
BE217635|BE217635.1 MD0265 Meloidogyne incognita J2 (#MD99-1) Meloidogyne incognita cDNA clone 2994 5' similar to unknown Meloidogyne incognita cDNA, mRNA sequence. 40 1.2 2
AC068897|AC068897.1 Homo sapiens chromosome CHROM 10 clone RP11-498K22, WORKING DRAFT SEQUENCE, 80 unordered pieces. 42 1.6 3
dna update 2003. 9. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54RQ1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn... 382 0.0
(Q54RN1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn... 155 6e-61
CP000828_5114(CP000828|pid:none) Acaryochloris marina MBIC11017,... 81 7e-14
CP000269_1690(CP000269|pid:none) Janthinobacterium sp. Marseille... 80 2e-13
(Q54G70) RecName: Full=Superoxide dismutase [Cu-Zn] 5; ... 74 7e-12
(P80566) RecName: Full=Superoxide dismutase [Cu-Zn]; EC... 72 4e-11
CP000884_3926(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 71 8e-11
S65436(S65436)superoxide dismutase (EC 1.15.1.1) (Cu-Zn) - chicken 70 1e-10
EU158255_1(EU158255|pid:none) Diplodon chilensis superoxide dism... 70 1e-10
S29782(S29782)superoxide dismutase (EC 1.15.1.1) (Cu-Zn) - logge... 70 1e-10
protein update 2009. 6.17
PSORT

psg: 0.98 gvh: 0.75 alm: 0.40 top: 0.33 tms: 0.00 mit: 0.32 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
16.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: Golgi

>> prediction for VFB552 is exc

5' end seq. ID VFB552F
5' end seq.
>VFB552F.Seq
AAAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATT
AGTATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAA
ATTCAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGG
AACAACATTAAATATTACATTTGATTTTACAACATCATATGCACAAAATACACAATTTGC
TGCACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTATT
TGATCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATAT
TGGTAATATTCAAGCAAATGGTGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCC
AAATATTAAAGATGATGCCAATTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAG
TTATGATTGTTCAGATCCAAGTAAATCAGTAATTGGTGATATGATTAGT----------
Length of 5' end seq. 529
3' end seq. ID VFB552Z
3' end seq.
>VFB552Z.Seq
----------GGTGTCANCACTGCATCATCCTATTCAAATTTAGAGAATGCAATTGGTTT
AGCAGTAGTTTACAATACTACCATCACCAAAGGTGATTACATTGAAGGTAGAGTTTTATT
CAAAGCACTCAATTCTTCATTCATTCAAGTATCTGCTAAAGTTTCCGGTTTATCTTATCA
AGCTCATGGTTTCCATGTTCATCAATTTGGTGATGTTTCATCGGATAATGGTACTTCAAT
TGGTGGTCATTTCTTAAAGACTGGTCAAGAACATTCTCTCCCACCATCTGGAACTAGACA
TTATGGTGATTTTGGTAATTTCTGTGCTTTCTCTCAAGATATGATGGATACTGGTTACTA
TTATTATGAGACTGATCATGTCACTGCCGCTTTAGTCATTGGTANAGGTATGGCCGTTCA
TAACTTTACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTGTCAT
TGCTTTAATTCAAGATGCTGATTACAGTTTAAATCTTCCAATGGATTGNAAATGGGATGT
CATTTGTGCAAATGGTTCATACTATGGTGATA
Length of 3' end seq. 562
Connected seq. ID VFB552P
Connected seq.
>VFB552P.Seq
AAAGTTACAGTCTGATTGATTATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATT
AGTATTTTTGATTTCAGTTATTTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAA
ATTCAATGAATTATCAATTGGTGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGG
AACAACATTAAATATTACATTTGATTTTACAACATCATATGCACAAAATACACAATTTGC
TGCACAAATTTTAACATATGGTTATAATCCATCATCAATGACCAATTTAGGAAGTGTATT
TGATCCAACCAATGTAAAGACAGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATAT
TGGTAATATTCAAGCAAATGGTGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCC
AAATATTAAAGATGATGCCAATTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAG
TTATGATTGTTCAGATCCAAGTAAATCAGTAATTGGTGATATGATTAGT----------G
GTGTCANCACTGCATCATCCTATTCAAATTTAGAGAATGCAATTGGTTTAGCAGTAGTTT
ACAATACTACCATCACCAAAGGTGATTACATTGAAGGTAGAGTTTTATTCAAAGCACTCA
ATTCTTCATTCATTCAAGTATCTGCTAAAGTTTCCGGTTTATCTTATCAAGCTCATGGTT
TCCATGTTCATCAATTTGGTGATGTTTCATCGGATAATGGTACTTCAATTGGTGGTCATT
TCTTAAAGACTGGTCAAGAACATTCTCTCCCACCATCTGGAACTAGACATTATGGTGATT
TTGGTAATTTCTGTGCTTTCTCTCAAGATATGATGGATACTGGTTACTATTATTATGAGA
CTGATCATGTCACTGCCGCTTTAGTCATTGGTANAGGTATGGCCGTTCATAACTTTACTG
ATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTGTCATTGCTTTAATTC
AAGATGCTGATTACAGTTTAAATCTTCCAATGGATTGNAAATGGGATGTCATTTGTGCAA
ATGGTTCATACTATGGTGATA
Length of connected seq. 1091
Full length Seq ID -
Full length Seq. -
Length of full length seq. -