VFB551
Library VF
(Link to library)
Clone ID VFB551
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16449-1
Original site URL
Representative seq. ID VFB551P
(Link to Original site)
Representative DNA sequence
>VFB551 (VFB551Q) /CSM/VF/VFB5-C/VFB551Q.Seq.d/
CACTGTTGGCCTACTGGATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAATG
TCAAAAACTCCAGCTAAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACCAC
CTCCAAATGGGTGTTGNTGGTATGCCAAATGTTGGTAAAAGTNCATNGNTCAATTTATTA
TGTAAAATGCCAATXXXXXXXXXXCCNCAAGCTGCTGGTGTCATTCACACTGATTTCGAA
AAAGGTTTCATTATGGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTANAATCTGAA
GCTGAATGTAAATCAAGAGGNAAATATAGAATGGAAGGTAAAAACTATGAAGTTGTTGAT
GGTGATATTATTTTCTTCAAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
hcwptgfsvcieikvl*YKMSKTPAKLVDCSSTLSRVGNHLQMGVXGMPNVGKSXXXNLL
CKMP---

---PQAAGVIHTDFEKGFIMAETMAYSDFFELXSEAECKSRGKYRMEGKNYEVVDGDIIF
FK


Translated Amino Acid sequence (All Frames)
Frame A:
hcwptgfsvcieikvl*YKMSKTPAKLVDCSSTLSRVGNHLQMGVXGMPNVGKSXXXNLL
CKMP---

---PQAAGVIHTDFEKGFIMAETMAYSDFFELXSEAECKSRGKYRMEGKNYEVVDGDIIF
FK

Frame B:
tvglldfqfvlrlrfynikcqklqlnl*ivvqpsaelvttskwvlxvcqmlvkvhxsiyy
vkcq---

---xkllvsftliskkvslwlklwliltfsnxnlklnvnqexniewkvktmkllmvilfs
sn

Frame C:
llaywifsly*d*gfii*nvknss*tcrl*fnpqqsw*pppngcxwyakcw*kxxxqfim
*nan---

---xscwchsh*frkrfhyg*nyglf*lfrixi*s*m*ikrxi*ngr*kl*sc*w*yyfl
q

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB551 (VFB551Q) /CSM/VF/VFB5-C/VFB551Q.Seq.d/ 656 0.0
VFI192 (VFI192Q) /CSM/VF/VFI1-D/VFI192Q.Seq.d/ 335 3e-91
VFF551 (VFF551Q) /CSM/VF/VFF5-C/VFF551Q.Seq.d/ 335 3e-91
VFE271 (VFE271Q) /CSM/VF/VFE2-C/VFE271Q.Seq.d/ 335 3e-91
VFC844 (VFC844Q) /CSM/VF/VFC8-B/VFC844Q.Seq.d/ 335 3e-91
VFC233 (VFC233Q) /CSM/VF/VFC2-B/VFC233Q.Seq.d/ 335 3e-91
SSD565 (SSD565Q) /CSM/SS/SSD5-C/SSD565Q.Seq.d/ 335 3e-91
SLE456 (SLE456Q) /CSM/SL/SLE4-C/SLE456Q.Seq.d/ 335 3e-91
SLB310 (SLB310Q) /CSM/SL/SLB3-A/SLB310Q.Seq.d/ 335 3e-91
SLA137 (SLA137Q) /CSM/SL/SLA1-B/SLA137Q.Seq.d/ 335 3e-91

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AV099978|AV099978.1 Mus musculus ES cell cDNA, partial sequence, clone 2410052E11. 54 5e-10 2
BB360855|BB360855.1 Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130001B02, 3' end partial sequence, similar to ddbj:AF078868 Homo sapiens homologous yeast-44.2 protein mRNA. 54 6e-10 2
AV302971|AV302971.1 Mus musculus 8 days embryo cDNA, RIKEN full-length enriched library, clone:5730508A14, 3' end partial sequence. 54 8e-10 2
BI863769|BI863769.1 kx48b08.y1 Parastrongyloides trichosuri FL pAMP1 v1 Chiapelli McCarter Parastrongyloides trichosuri cDNA 5' similar to SW:YCHF_CAEEL P91917 PUTATIVE GTP-BINDING PROTEIN W08E3.3. [1] ;, mRNA sequence. 60 5e-08 2
AV137881|AV137881.1 Mus musculus 10-11 day embryo cDNA, partial sequence, clone 2810037K01. 54 1e-07 2
AV123791|AV123791.1 Mus musculus 11-day embryo cDNA, partial sequence, clone 2700009C22. 54 1e-07 2
BB561068|BB561068.1 Mus musculus 10 days neonate olfactory brain cDNA, RIKEN full-length enriched library, clone:E530119I06, 3' end partial sequence, similar to ddbj:AF078868 Homo sapiens homologous yeast-44.2 protein mRNA. 54 1e-07 2
BG180011|BG180011.1 602329562F1 NIH_MGC_91 Homo sapiens cDNA clone IMAGE:4431110 5', mRNA sequence. 46 4e-07 2
BB414881|BB414881.1 Mus musculus 7 days embryo cDNA, RIKEN full-length enriched library, clone:C430039M21, 3' end partial sequence, similar to ddbj:AF078868 Homo sapiens homologous yeast-44.2 protein mRNA. 62 5e-06 1
BU666237|BU666237.1 Na_L3_34F08_SAC Necator americanus (parasitic nematode) L3 Necator americanus cDNA clone Na_L3_34F08 5' similar to Similar to W08E3.3 CE14708 GTP-binding protein like, mRNA sequence. 60 2e-05 1
dna update 2003. 9. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ443128_1(DQ443128|pid:none) Bombyx mori GTP binding protein mR... 89 4e-17
(Q5ZM25) RecName: Full=Obg-like ATPase 1; EC=3.6.3.-; ... 88 8e-17
(Q66JG0) RecName: Full=Obg-like ATPase 1; EC=3.6.3.-; ... 87 2e-16
CR760885_1(CR760885|pid:none) Xenopus tropicalis finished cDNA, ... 87 2e-16
(Q7ZWM6) RecName: Full=Obg-like ATPase 1; EC=3.6.3.-; ... 87 2e-16
(P91917) RecName: Full=Putative GTP-binding protein tag-210; &T... 87 2e-16
(Q2HJ33) RecName: Full=Obg-like ATPase 1; EC=3.6.3.-; ... 86 3e-16
(Q9NTK5) RecName: Full=Obg-like ATPase 1; EC=3.6.3.-; A... 86 3e-16
EF215326_1(EF215326|pid:none) Callithrix jacchus clone B20-45.4_... 86 3e-16
AK027523_1(AK027523|pid:none) Homo sapiens cDNA FLJ14617 fis, cl... 86 3e-16
protein update 2009. 6.17
PSORT

psg: 0.79 gvh: 0.52 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.24 mip: 0.04
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
28.0 %: cytoplasmic
16.0 %: cytoskeletal
12.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: endoplasmic reticulum

>> prediction for VFB551 is nuc

5' end seq. ID VFB551F
5' end seq.
>VFB551F.Seq
CACTGTTGGCCTACTGGATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAATG
TCAAAAACTCCAGCTAAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACCAC
CTCCAAATGGGTGTTGNTGGTATGCCAAATGTTGGTAAAAGTNCATNGNTCAATTTATTA
TGTAAAATGCCAAT----------
Length of 5' end seq. 194
3' end seq. ID VFB551Z
3' end seq.
>VFB551Z.Seq
----------CCNCAAGCTGCTGGTGTCATTCACACTGATTTCGAAAAAGGTTTCATTAT
GGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTANAATCTGAAGCTGAATGTAAATC
AAGAGGNAAATATAGAATGGAAGGTAAAAACTATGAAGTTGTTGATGGTGATATTATTTT
CTTCAAAT
Length of 3' end seq. 178
Connected seq. ID VFB551P
Connected seq.
>VFB551P.Seq
CACTGTTGGCCTACTGGATTTTCAGTTTGTATTGAGATTAAGGTTTTATAATATAAAATG
TCAAAAACTCCAGCTAAACTTGTAGATTGTAGTTCAACCCTCAGCAGAGTTGGTAACCAC
CTCCAAATGGGTGTTGNTGGTATGCCAAATGTTGGTAAAAGTNCATNGNTCAATTTATTA
TGTAAAATGCCAAT----------CCNCAAGCTGCTGGTGTCATTCACACTGATTTCGAA
AAAGGTTTCATTATGGCTGAAACTATGGCTTATTCTGACTTTTTCGAATTANAATCTGAA
GCTGAATGTAAATCAAGAGGNAAATATAGAATGGAAGGTAAAAACTATGAAGTTGTTGAT
GGTGATATTATTTTCTTCAAAT
Length of connected seq. 372
Full length Seq ID -
Full length Seq. -
Length of full length seq. -