>VFB542 (VFB542Q) /CSM/VF/VFB5-B/VFB542Q.Seq.d/
ATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACTTCAATCAATTGC
AAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTTACAAGACTCTGT
TCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGGAAATTTAATCGA
GTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACAAATTTTAGCAGG
TGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAAAATTGCAAAAGA
GATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTCATTATCAAAAGC
AGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATCATATCCAAGAGC
AAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATGTCACGATGATAC
ACCAATGGTTAAGAGAGCTGCTGCAACTAATTTAGGTAGTTTTGCAAAACAAATTGAAAA
AGAATCAGTTAAATCAGAXXXXXXXXXX

LKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYLQDSVLEDEDEVLVVLSEELGNLIE
FVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCKIAKEIPTSSFEESFLPLLFSLSKA
DWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLCHDDTPMVKRAAATNLGSFAKQIEK
ESVKS---

Frame A:
ikk*gytt*t*fnkktsincksirtrtypyrinpiftrlcsrr*r*sfsciirrirkfnr
vcwwcrtcclfittitnfsrc*gisc*rkgsgiim*nckrdpniiirriipsiiifiiks
rlvyityismwtfhciiskskc*neeifkknfwgimsr*ytng*esccn*fr*fcktn*k
ris*i---


Frame B:
LKNEDIQLRLNSIKKLQSIAKALGPERTRTELIPYLQDSVLEDEDEVLVVLSEELGNLIE
FVGGAEHAVCLLPPLQILAGAEELVVREKAVESLCKIAKEIPTSSFEESFLPLLFSLSKA
DWFTSRTSACGLFTVSYPRANAEMKKSLRKTFGGLCHDDTPMVKRAAATNLGSFAKQIEK
ESVKS---


Frame C:
*kmriynldliq*knfnqlqkh*dqnvpvqn*shiyktlfskmkmkf*lyyqkn*ei*ss
llvvqnmlfvyyhhykf*qvlrn*llekrqwnhyvklqkrsqhhhsknhsfhyyfhyqkq
iglhhvhqhvdfslyhiqeqmlk*rnl*ekllgdyvtmihqwlrellqli*vvlqnklkk
nqlnq---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFD320 (VFD320Q) /CSM/VF/VFD3-A/VFD320Q.Seq.d/                       1065   0.0
VFB542 (VFB542Q) /CSM/VF/VFB5-B/VFB542Q.Seq.d/                       1065   0.0
SFF891 (SFF891Q) /CSM/SF/SFF8-D/SFF891Q.Seq.d/                       1065   0.0
CHD539 (CHD539Q) /CSM/CH/CHD5-B/CHD539Q.Seq.d/                       1053   0.0
CFJ329 (CFJ329Q) /CSM/CF/CFJ3-B/CFJ329Q.Seq.d/                       1047   0.0
CFC574 (CFC574Q) /CSM/CF/CFC5-D/CFC574Q.Seq.d/                       1047   0.0
SFJ287 (SFJ287Q) /CSM/SF/SFJ2-D/SFJ287Q.Seq.d/                       1039   0.0
VFK235 (VFK235Q) /CSM/VF/VFK2-B/VFK235Q.Seq.d/                       1035   0.0
VFI677 (VFI677Q) /CSM/VF/VFI6-D/VFI677Q.Seq.d/                       1031   0.0
VFG407 (VFG407Q) /CSM/VF/VFG4-A/VFG407Q.Seq.d/                       1031   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U61987|U61987.1 Dictyostelium discoideum phosphoprotein phosphatase A (pppA) mRNA, complete cds.  1015  0.0  2
AC134922|AC134922.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone Ba0004D06, *** SEQUENCING IN PROGRESS ***, 10 ordered pieces.    40  0.010  5
BI503110|BI503110.1 BB170002A20B08 Bee Brain Normalized/Subtracted Library, BB17 Apis mellifera cDNA clone BB170002A20B08 5', mRNA sequence.    50  0.030  1
BI510929|BI510929.1 BB160004A10E08 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160004A10E08 5', mRNA sequence.    50  0.030  1
BI670654|BI670654.1 PfESToaa02f08.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5', mRNA sequence.    42  0.30  2
AC099098|AC099098.5 Rattus norvegicus clone CH230-148P4, WORKING DRAFT SEQUENCE, 2 unordered pieces.    40  0.35  5
AC012413|AC012413.10 Homo sapiens chromosome 8, clone RP11-401H2, complete sequence.    36  0.50  5
AC133114|AC133114.2 Rattus norvegicus clone CH230-1J6, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.    42  0.81  2
AE017001|AE017001.1 Bacillus cereus ATCC 14579 section 4 of 18 of the complete genome.    40  0.95  4
AC094507|AC094507.8 Rattus norvegicus clone CH230-4E15, WORKING DRAFT SEQUENCE, 19 unordered pieces.    50  1.5  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61987_1(U61987|pid:none) Dictyostelium discoideum phosphoprotei...   287   1e-76
AJ876407_1(AJ876407|pid:none) Tribolium castaneum mRNA for phosp...   176   3e-43
BX901896_5(BX901896|pid:none) Zebrafish DNA sequence from clone ...   174   1e-42
BT072580_1(BT072580|pid:none) Salmo salar clone ssal-rgf-531-139...   174   1e-42
AK161392_1(AK161392|pid:none) Mus musculus adult male testis cDN...   174   1e-42
(Q4QQT4) RecName: Full=Serine/threonine-protein phosphatase 2A 6...   174   1e-42
AK292275_1(AK292275|pid:none) Homo sapiens cDNA FLJ76434 complet...   174   2e-42
EU561359_1(EU561359|pid:none) Carassius auratus protein phosphat...   174   2e-42
BC027596_1(BC027596|pid:none) Homo sapiens protein phosphatase 2...   174   2e-42
AB168293_1(AB168293|pid:none) Macaca fascicularis testis cDNA cl...   174   2e-42

 psg: 0.58  gvh: 0.39  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for VFB542 is cyt

>VFB542F.Seq
ATTAAAAAATGAGGATATACAACTTAGACTTAATTCAATAAAAAAACTTCAATCAATTGC
AAAAGCATTAGGACCAGAACGTACCCGTACAGAATTAATCCCATATTTACAAGACTCTGT
TCTCGAAGATGAAGATGAAGTTTTAGTTGTATTATCAGAAGAATTAGGAAATTTAATCGA
GTTTGTTGGTGGTGCAGAACATGCTGTTTGTTTATTACCACCATTACAAATTTTAGCAGG
TGCTGAGGAATTAGTTGTTAGAGAAAAGGCAGTGGAATCATTATGTAAAATTGCAAAAGA
GATCCCAACATCATCATTCGAAGAATCATTCCTTCCATTATTATTTTCATTATCAAAAGC
AGATTGGTTTACATCACGTACATCAGCATGTGGACTTTTCACTGTATCATATCCAAGAGC
AAATGCTGAAATGAAGAAATCTTTAAGAAAAACTTTTGGGGGATTATGTCACGATGATAC
ACCAATGGTTAAGAGAGCTGCTGCAACTAATTTAGGTAGTTTTGCAAAACAAATTGAAAA
AGAATCAGTTAAATCAGA----------