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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB524
Library VF
(Link to library)
Clone ID VFB524
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14169-1
Original site URL
Representative seq. ID VFB524Z
(Link to Original site)
Representative DNA sequence 
>VFB524 (VFB524Q) /CSM/VF/VFB5-A/VFB524Q.Seq.d/
XXXXXXXXXXTTACAATTNCANTGAANCAAAAGATTTTGCTCAATTCGATTTCCCAGGTG
CTGGTGAAATGGCTGNAATGTTTTCTTATTACAATGAATTTGGTGCATTTGATNAATTAG
ATAANACTGAAGCTTCAAAAATTNCAAAATTAACAAATCTTGAAGAATTTTTGAAAAAAA
CTAATTTTCAACTTGAAATAGTTAAATATGCCATATTTATTTTAGACTTATTTTAATATA
CAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---YNXXEXKDFAQFDFPGAGEMAXMFSYYNEFGAFDXLDXTEASKIXKLTNLEEFLKKT
NFQLEIVKYAIFILDLF*yt
Translated Amino Acid sequence (All Frames) 
Frame A:
---YNXXEXKDFAQFDFPGAGEMAXMFSYYNEFGAFDXLDXTEASKIXKLTNLEEFLKKT
NFQLEIVKYAIFILDLF*yt


Frame B:
---tixxxqkillnsisqvlvkwlxcflitmnlvhlxn*ixlklqkxqn*qilknf*kkl
ifnlk*lnmpylf*tyfniq


Frame C:
---qxx*xkrfcsirfprcw*ngxnvfllq*iwci*xir*x*sfknxkinks*rifekn*
fst*ns*ichiyfrliliy
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB524 (VFB524Q) /CSM/VF/VFB5-A/VFB524Q.Seq.d/                        379   e-104
VSC634 (VSC634Q) /CSM/VS/VSC6-B/VSC634Q.Seq.d/                        355   2e-97
SSK757 (SSK757Q) /CSM/SS/SSK7-C/SSK757Q.Seq.d/                        355   2e-97
SSI355 (SSI355Q) /CSM/SS/SSI3-C/SSI355Q.Seq.d/                        355   2e-97
SSH480 (SSH480Q) /CSM/SS/SSH4-D/SSH480Q.Seq.d/                        355   2e-97
SSE394 (SSE394Q) /CSM/SS/SSE3-D/SSE394Q.Seq.d/                        355   2e-97
SSD246 (SSD246Q) /CSM/SS/SSD2-B/SSD246Q.Seq.d/                        355   2e-97
SLG109 (SLG109Q) /CSM/SL/SLG1-A/SLG109Q.Seq.d/                        355   2e-97
SLB447 (SLB447Q) /CSM/SL/SLB4-B/SLB447Q.Seq.d/                        355   2e-97
SHJ563 (SHJ563Q) /CSM/SH/SHJ5-C/SHJ563Q.Seq.d/                        347   5e-95
own update 2002.12.15
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   281  3e-89  3
AL031653|AL031653.5 Human DNA sequence from clone RP5-1121J18 on chromosome 20. Contains ESTs, STS, GSSs, a ca repeat polymorphism and genomic marker  D20S115.    50  0.16  2
AF101315|AF101315.2 Caenorhabditis elegans cosmid T22H9.    36  0.17  2
CC492296|CC492296.1 CH240_326I24.T7 CHORI-240 Bos taurus genomic clone CH240_326I24, genomic survey sequence.    46  0.19  1
AP005894|AP005894.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0095O23, WORKING DRAFT SEQUENCE, 1 ordered pieces.    44  0.76  1
AF179267|AF179267.1 Lactococcus lactis endopeptidase PepO2 (pepO2) gene, complete cds.    40  0.81  2
Z70204|Z70204.1 Caenorhabditis elegans cosmid C11G6.              40  2.7  2
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36  2.8  3
AL929289|AL929289.6 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-107O18.    40  2.8  3
AC109730|AC109730.4 Rattus norvegicus clone CH230-331J12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42  3.0  1
dna update 2003. 9. 3
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117176_51(AC117176|pid:none) Dictyostelium discoideum chromoso...    63   4e-09
CP001316_20(CP001316|pid:none) Borrelia garinii Far04 plasmid Fa...    32   6.8
CP001495_17(CP001495|pid:none) Borrelia burgdorferi 94a plasmid ...    32   8.9
AE001584_59(AE001584|pid:none) Borrelia burgdorferi B31 plasmid ...    32   8.9
protein update 2009. 6.17
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for VFB524 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFB524Z
3' end seq. 
>VFB524Z.Seq
----------TTACAATTNCANTGAANCAAAAGATTTTGCTCAATTCGATTTCCCAGGTG
CTGGTGAAATGGCTGNAATGTTTTCTTATTACAATGAATTTGGTGCATTTGATNAATTAG
ATAANACTGAAGCTTCAAAAATTNCAAAATTAACAAATCTTGAAGAATTTTTGAAAAAAA
CTAATTTTCAACTTGAAATAGTTAAATATGCCATATTTATTTTAGACTTATTTTAATATA
CAA
Length of 3' end seq. 233
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -