VFB517
Library VF
(Link to library)
Clone ID VFB517
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16480-1
Original site URL
Representative seq. ID VFB517P
(Link to Original site)
Representative DNA sequence
>VFB517 (VFB517Q) /CSM/VF/VFB5-A/VFB517Q.Seq.d/
ATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTAGTATTTTTGATTTCAGTTAT
TTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAATTCAATGAATTATCAATTGG
TGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGAACAACATTAAATATTACATT
TGATTTTACAACATCATATGCACAAAATACACAATTTGCTGCACAAATTTTAACATATGG
TTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTTGATCCAACCAATGTAAAGAC
AGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATTGGTAATATTCAAGCAAATGG
TGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCAAATATTAAAGATGATGCCAA
TTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGTTATGATTGTTCAGATCCAAG
TAAATCAGTAATTGGTGATATGATTAGTTTTTGTACTATTGGTGTTGGTAATATCGATTA
TTCATCATTTGATAAATCTAAGTTAACAGGTGTCAACACTGCATCATCCTATTCAAATTT
AGAGAATGCAATTGGTTXXXXXXXXXXTTNTGTGCTTTCTCTCAAGATATGATGGATACT
GGTTACTATTATTATGAGACTGATCATGTCACTGCCGCTTTAGTCATTGGTAGAGGTATG
GCCGTTCATAACTTTACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAA
GGTGTCATTGCTTTAATTCAAGATGCTGATTACAGTTTAAATCTTCCAATGGATTGGAAA
TGGGATGTCATTTGTGCAAATGGTTCATACTATGGTGATATGTCAACAAGTATGAACAGT
GAAAGTTATAACGACAATGAACCAGGTTCATCATCAACTGTTAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
fisk*KMRLLSVLVFLISVISIAKADYQYAFCKFNELSIGGVEGIAHLLSTDGTTLNITF
DFTTSYAQNTQFAAQILTYGYNPSSMTNLGSVFDPTNVKTAGCPSGTPRAGDIGNIQANG
GNVEAQTISLNIPNIKDDANSIIGRSIAIYGGSYDCSDPSKSVIGDMISFCTIGVGNIDY
SSFDKSKLTGVNTASSYSNLENAIG---

---XCAFSQDMMDTGYYYYETDHVTAALVIGRGMAVHNFTDKGNSDVGGSRCGQGVIALI
QDADYSLNLPMDWKWDVICANGSYYGDMSTSMNSESYNDNEPGSSSTV


Translated Amino Acid sequence (All Frames)
Frame A:
iylkiknetficisifdfsyfhcksrlpicfl*iq*iinwwc*rycssfky*wnnikyyi
*fyniictkyticctnfniwl*siindqfrkci*snqckdsrmskwnttcr*yw*ysskw
w*c*stnnfikhsky*r*cqfnywsfncnlww*l*lfrsk*isnw*yd*flyywcw*yrl
fii**i*vnrcqhciilfkfrecnw---

---XCAFSQDMMDTGYYYYETDHVTAALVIGRGMAVHNFTDKGNSDVGGSRCGQGVIALI
QDADYSLNLPMDWKWDVICANGSYYGDMSTSMNSESYNDNEPGSSSTV

Frame B:
fisk*KMRLLSVLVFLISVISIAKADYQYAFCKFNELSIGGVEGIAHLLSTDGTTLNITF
DFTTSYAQNTQFAAQILTYGYNPSSMTNLGSVFDPTNVKTAGCPSGTPRAGDIGNIQANG
GNVEAQTISLNIPNIKDDANSIIGRSIAIYGGSYDCSDPSKSVIGDMISFCTIGVGNIDY
SSFDKSKLTGVNTASSYSNLENAIG---

---xvlslki*wilvtiimrlimslpl*slvevwpfitllikvivmlvvlvvvkvsll*f
kmlitv*ifqwigngmsfvqmvhtmvicqqv*tvkvittmnqvhhqll

Frame C:
lsqnkk*dfyly*yf*fqlfplqkpitnmlfvnsmnyqlvvlkvllif*vlmeqh*ilhl
ilqhhmhkihnllhkf*hmviihhq*pi*evyliqpm*rqqdvqvehhvqvilvifkqmv
vmlkhkqfh*tfqilkmmpiqllvvqlqsmvvvmivqiqvnq*lvi*lvfvllvlvisii
hhlinls*qvstlhhpiqi*rmqlv---

---xcflsrydgywllll*d*schcrfshw*rygrs*ly**r***cwwfslwsrchcfns
rc*lqfkssnglemgchlckwfilw*yvnkyeq*kl*rq*trfiincy

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB517 (VFB517Q) /CSM/VF/VFB5-A/VFB517Q.Seq.d/ 1806 0.0
VHK773 (VHK773Q) /CSM/VH/VHK7-D/VHK773Q.Seq.d/ 1215 0.0
VFO783 (VFO783Q) /CSM/VF/VFO7-D/VFO783Q.Seq.d/ 1215 0.0
VFN527 (VFN527Q) /CSM/VF/VFN5-B/VFN527Q.Seq.d/ 1215 0.0
VFN454 (VFN454Q) /CSM/VF/VFN4-C/VFN454Q.Seq.d/ 1215 0.0
VFM834 (VFM834Q) /CSM/VF/VFM8-B/VFM834Q.Seq.d/ 1215 0.0
VFM454 (VFM454Q) /CSM/VF/VFM4-C/VFM454Q.Seq.d/ 1215 0.0
VFM189 (VFM189Q) /CSM/VF/VFM1-D/VFM189Q.Seq.d/ 1215 0.0
VFL780 (VFL780Q) /CSM/VF/VFL7-D/VFL780Q.Seq.d/ 1215 0.0
VFL752 (VFL752Q) /CSM/VF/VFL7-C/VFL752Q.Seq.d/ 1215 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC087425|AC087425.2 Oryza sativa chromosome 5 clone P0676G05, complete sequence. 40 0.15 7
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 38 0.57 8
AP001686|AP001686.1 Homo sapiens genomic DNA, chromosome 21q, section 30/105. 36 1.3 9
AL021712|AL021712.2 Arabidopsis thaliana DNA chromosome 4, BAC clone T10I14 (ESSA project). 40 1.5 2
AC146299|AC146299.1 Mus musculus chromosome UNK clone RP23-72A20, *** SEQUENCING IN PROGRESS ***, 38 unordered pieces. 36 2.0 3
AF310889|AF310889.1 Dictyostelium discoideum RacD (racD) gene, complete cds; and unknown genes. 44 2.5 2
Z81077|Z81077.1 Caenorhabditis elegans cosmid F36A2. 38 2.5 2
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 32 2.7 8
AC127019|AC127019.17 Medicago truncatula clone mth2-31b1, WORKING DRAFT SEQUENCE, 13 unordered pieces. 38 3.2 4
CD289203|CD289203.1 9_G4.abd POE14_(Day_14_pregnant_ovine_endometrium) Ovis aries cDNA, mRNA sequence. 44 3.2 1
dna update 2003. 9. 3
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54RQ1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn... 370 e-101
(Q54RN1) RecName: Full=Extracellular superoxide dismutase [Cu-Zn... 116 1e-24
(Q8J0N2) RecName: Full=Superoxide dismutase [Cu-Zn]; EC... 49 2e-04
(Q96VL0) RecName: Full=Superoxide dismutase [Cu-Zn]; EC... 48 6e-04
FJ194441_1(FJ194441|pid:none) Cristaria plicata Cu-Zn superoxide... 47 7e-04
AY672457_1(AY672457|pid:none) Lasius niger extracellular Cu/Zn s... 46 0.002
CU928179_739(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 46 0.002
BC167137_1(BC167137|pid:none) Xenopus tropicalis hypothetical pr... 45 0.003
(Q751L8) RecName: Full=Superoxide dismutase [Cu-Zn]; EC... 45 0.004
AX461032_1(AX461032|pid:none) Sequence 22 from Patent WO0222823. 45 0.004
protein update 2009. 6.17
PSORT

psg: 0.98 gvh: 0.75 alm: 0.39 top: 0.33 tms: 0.00 mit: 0.32 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: extracellular, including cell wall
16.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: cytoplasmic
4.0 %: Golgi
4.0 %: mitochondrial

>> prediction for VFB517 is exc

5' end seq. ID VFB517F
5' end seq.
>VFB517F.Seq
ATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTAGTATTTTTGATTTCAGTTAT
TTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAATTCAATGAATTATCAATTGG
TGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGAACAACATTAAATATTACATT
TGATTTTACAACATCATATGCACAAAATACACAATTTGCTGCACAAATTTTAACATATGG
TTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTTGATCCAACCAATGTAAAGAC
AGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATTGGTAATATTCAAGCAAATGG
TGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCAAATATTAAAGATGATGCCAA
TTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGTTATGATTGTTCAGATCCAAG
TAAATCAGTAATTGGTGATATGATTAGTTTTTGTACTATTGGTGTTGGTAATATCGATTA
TTCATCATTTGATAAATCTAAGTTAACAGGTGTCAACACTGCATCATCCTATTCAAATTT
AGAGAATGCAATTGGTT----------
Length of 5' end seq. 617
3' end seq. ID VFB517Z
3' end seq.
>VFB517Z.Seq
----------TTNTGTGCTTTCTCTCAAGATATGATGGATACTGGTTACTATTATTATGA
GACTGATCATGTCACTGCCGCTTTAGTCATTGGTAGAGGTATGGCCGTTCATAACTTTAC
TGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAAGGTGTCATTGCTTTAAT
TCAAGATGCTGATTACAGTTTAAATCTTCCAATGGATTGGAAATGGGATGTCATTTGTGC
AAATGGTTCATACTATGGTGATATGTCAACAAGTATGAACAGTGAAAGTTATAACGACAA
TGAACCAGGTTCATCATCAACTGTTAT
Length of 3' end seq. 317
Connected seq. ID VFB517P
Connected seq.
>VFB517P.Seq
ATTTATCTCAAAATAAAAAATGAGACTTTTATCTGTATTAGTATTTTTGATTTCAGTTAT
TTCCATTGCAAAAGCCGATTACCAATATGCTTTTTGTAAATTCAATGAATTATCAATTGG
TGGTGTTGAAGGTATTGCTCATCTTTTAAGTACTGATGGAACAACATTAAATATTACATT
TGATTTTACAACATCATATGCACAAAATACACAATTTGCTGCACAAATTTTAACATATGG
TTATAATCCATCATCAATGACCAATTTAGGAAGTGTATTTGATCCAACCAATGTAAAGAC
AGCAGGATGTCCAAGTGGAACACCACGTGCAGGTGATATTGGTAATATTCAAGCAAATGG
TGGTAATGTTGAAGCACAAACAATTTCATTAAACATTCCAAATATTAAAGATGATGCCAA
TTCAATTATTGGTCGTTCAATTGCAATCTATGGTGGTAGTTATGATTGTTCAGATCCAAG
TAAATCAGTAATTGGTGATATGATTAGTTTTTGTACTATTGGTGTTGGTAATATCGATTA
TTCATCATTTGATAAATCTAAGTTAACAGGTGTCAACACTGCATCATCCTATTCAAATTT
AGAGAATGCAATTGGTT----------TTNTGTGCTTTCTCTCAAGATATGATGGATACT
GGTTACTATTATTATGAGACTGATCATGTCACTGCCGCTTTAGTCATTGGTAGAGGTATG
GCCGTTCATAACTTTACTGATAAAGGTAATAGTGATGTTGGTGGTTCTCGTTGTGGTCAA
GGTGTCATTGCTTTAATTCAAGATGCTGATTACAGTTTAAATCTTCCAATGGATTGGAAA
TGGGATGTCATTTGTGCAAATGGTTCATACTATGGTGATATGTCAACAAGTATGAACAGT
GAAAGTTATAACGACAATGAACCAGGTTCATCATCAACTGTTAT
Length of connected seq. 934
Full length Seq ID -
Full length Seq. -
Length of full length seq. -