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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM173
Library AF
(Link to library)
Clone ID AFM173
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM173P
(Link to Original site)
Representative DNA sequence 
>AFM173 (AFM173Q) /CSM/AF/AFM1-D/AFM173Q.Seq.d/
ATTTTCCAATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAG
AATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAA
TTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAG
CAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAA
TTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTG
AAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATG
CATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTC
GTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGC
AAGAACAATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTG
GTTCAATCCATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAAXXXXXXXXXXGATTA
CACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTAGGC
GAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCCAGTCACTAAAGATTTA
ACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAAGGT
ATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTTAGT
GTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATTTTC
GAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAGGT
TGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTT
TTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATG
TTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAAT
GCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTGTT
ATTTATTTATTAGATGCTCATTCCAAGTTNATTAAATAAATAAACCT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
FPIDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEA
IQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDA
WDEGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESG
SIHLPQYVEKFQAE---

---LHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTICIT
GAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVTFKMDK
CASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGLLG
PGSNAHGPNEFLDIPFAKKLLSCVIYLLDAHSKXIK*in
Translated Amino Acid sequence (All Frames) 
Frame A:
ifqlikln*ikch*ilkklknlvikhgmkifyqhfqnilkfqinhhymmqngqpmviqkk
qfny*rngs*hkvskvfhvklkelkd*hqlfsw*skqpklkklklyfymvtwinnhhslm
hgmkdyihtkqssritnsmvvvvqmmviqhllqslqskhcknnqfhmivm*lslkvpknl
vqsiyhnmlrssklk---

---dytlkfhniv*iksqnvlkf*akpsmmnshgtkiplqslki*pn**stklgiqlfas
pvlkvfhtlqmlvms*eltpplklvfvyhhhskqlmhqly*kkfsklihhmvlklpskwi
nvlqvgihhkldqn*kkh*eklqifslakttytwvkvvpshs*kcymtvsivnlsllvy*
vqvqmlmvqmns*ifhlprny*vvlfiy*mlipsxlnk*t

Frame B:
fsn**n*ik*nviky*ks*ri***smg*kyftntfkiy*nsksitii*crmgnqwlyrrs
nsiiremdlstryqryfm*n*kn*rintnyfhgsrsnqn*ks*nctfiwshg*tttth*c
mg*ritsiqsshqe*qtlwswwcr*wlfnicfnlcnqsiartinst*slcnyh*rfrriw
fnpfttic*evps*---

---itr*nsttsfrsnrkmc*nfrrnhl**ilmvqkyhssh*rfnpiddqqnlvsnylhh
rc*rysthfkcw*chenshhr*s*csfttiiqss*cincikrnfrn*stiwc*sylqng*
mcfrlgfttn*trirksirrsfksflwqrprihg*rwfhpihenvt*pfqlsiyrywfir
srfkcswsk*ilrysicqeiiklcylfircsfqvx*inkp

Frame C:
FPIDKIKLNKMSLNIEKVKEFSNKAWDENILPTLSKYIEIPNQSPLYDAEWATNGYTEEA
IQLLEKWILAQGIKGISCEIKRIEGLTPIIFMVVEATKTEKVKTVLLYGHMDKQPPLTDA
WDEGLHPYKAVIKNNKLYGRGGADDGYSTFASISAIKALQEQSIPHDRYVIIIEGSEESG
SIHLPQYVEKFQAE---

---LHVEIPQHRLDQIAKCAEILGETIYDEFSWYKNTTPVTKDLTQLMINKTWYPTICIT
GAEGIPHTSNAGNVMRTHTTVKVSVRLPPSFKAADASTVLKEIFETNPPYGAEVTFKMDK
CASGWDSPQTRPELEKALGEASNLFFGKDHVYMGEGGSIPFMKMLHDRFNCQFIVTGLLG
PGSNAHGPNEFLDIPFAKKLLSCVIYLLDAHSKXIK*in
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM173 (AFM173Q) /CSM/AF/AFM1-D/AFM173Q.Seq.d/                       2280   0.0
VFN247 (VFN247Q) /CSM/VF/VFN2-B/VFN247Q.Seq.d/                       1287   0.0
VFI895 (VFI895Q) /CSM/VF/VFI8-D/VFI895Q.Seq.d/                       1287   0.0
VFI168 (VFI168Q) /CSM/VF/VFI1-C/VFI168Q.Seq.d/                       1287   0.0
SFF785 (SFF785Q) /CSM/SF/SFF7-D/SFF785Q.Seq.d/                       1287   0.0
CFK209 (CFK209Q) /CSM/CF/CFK2-A/CFK209Q.Seq.d/                       1287   0.0
CFJ404 (CFJ404Q) /CSM/CF/CFJ4-A/CFJ404Q.Seq.d/                       1287   0.0
CFC744 (CFC744Q) /CSM/CF/CFC7-B/CFC744Q.Seq.d/                       1287   0.0
AFO706 (AFO706Q) /CSM/AF/AFO7-A/AFO706Q.Seq.d/                       1287   0.0
AFO568 (AFO568Q) /CSM/AF/AFO5-C/AFO568Q.Seq.d/                       1287   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ435532) Dictyostelium discoideum cDNA clone:ddv27m12, 3' ...  1285   0.0    1
(BJ435036) Dictyostelium discoideum cDNA clone:ddv25i22, 3' ...  1285   0.0    1
(BJ433712) Dictyostelium discoideum cDNA clone:ddv22p17, 3' ...  1285   0.0    1
(BJ432524) Dictyostelium discoideum cDNA clone:ddv18n24, 3' ...  1285   0.0    1
(BJ432087) Dictyostelium discoideum cDNA clone:ddv17g17, 3' ...  1285   0.0    1
(BJ398546) Dictyostelium discoideum cDNA clone:dds12j21, 3' ...  1285   0.0    1
(BJ376041) Dictyostelium discoideum cDNA clone:ddc21a04, 3' ...  1285   0.0    1
(BJ375536) Dictyostelium discoideum cDNA clone:ddc19h02, 3' ...  1285   0.0    1
(BJ374060) Dictyostelium discoideum cDNA clone:ddc6h11, 3' e...  1285   0.0    1
(BJ347113) Dictyostelium discoideum cDNA clone:dda26k05, 3' ...  1285   0.0    1
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM743169_1072(AM743169|pid:none) Stenotrophomonas maltophilia K2...   209   2e-52
CP001111_978(CP001111|pid:none) Stenotrophomonas maltophilia R55...   208   3e-52
CP000113_526(CP000113|pid:none) Myxococcus xanthus DK 1622, comp...   208   3e-52
AM746676_157(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ...   207   5e-52
AE008923_2905(AE008923|pid:none) Xanthomonas axonopodis pv. citr...   207   5e-52
AM039952_3097(AM039952|pid:none) Xanthomonas campestris pv. vesi...   207   6e-52
AE016828_97(AE016828|pid:none) Coxiella burnetii RSA 493, comple...   194   7e-48
CP001020_1727(CP001020|pid:none) Coxiella burnetii CbuK_Q154, co...   194   7e-48
CP000733_1810(CP000733|pid:none) Coxiella burnetii Dugway 5J108-...   194   7e-48
DQ384330_1(DQ384330|pid:none) Hartmannella vermiformis succinyl-...   193   1e-47
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM173 is

5' end seq. ID AFM173F
5' end seq. 
>AFM173F.Seq
ATTTTCCAATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAG
AATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAA
TTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAG
CAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAA
TTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTG
AAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATG
CATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTC
GTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGC
AAGAACAATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTG
GTTCAATCCATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAAXXXXXXXXXX
Length of 5' end seq. 595
3' end seq. ID AFM173Z
3' end seq. 
>AFM173Z.Seq
XXXXXXXXXXGATTACACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGT
GCTGAAATTTTAGGCGAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCCA
GTCACTAAAGATTTAACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATC
ACCGGTGCTGAAGGTATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACC
ACCGTTAAAGTTAGTGTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTA
TTAAAAGAAATTTTCGAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGAT
AAATGTGCTTCAGGTTGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGA
GAAGCTTCAAATCTTTTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATC
CCATTCATGAAAATGTTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTA
GGTCCAGGTTCAAATGCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAA
TTATTAAGTTGTGTTATTTATTTATTAGATGCTCATTCCAAGTTNATTAAATAAATAAAC
CT
Length of 3' end seq. 662
Connected seq. ID AFM173P
Connected seq. 
>AFM173P.Seq
ATTTTCCAATTGATAAAATTAAATTAAATAAAATGTCATTAAATATTGAAAAAGTTAAAG
AATTTAGTAATAAAGCATGGGATGAAAATATTTTACCAACACTTTCAAAATATATTGAAA
TTCCAAATCAATCACCATTATATGATGCAGAATGGGCAACCAATGGTTATACAGAAGAAG
CAATTCAATTATTAGAGAAATGGATCTTAGCACAAGGTATCAAAGGTATTTCATGTGAAA
TTAAAAGAATTGAAGGATTAACACCAATTATTTTCATGGTAGTCGAAGCAACCAAAACTG
AAAAAGTTAAAACTGTACTTTTATATGGTCACATGGATAAACAACCACCACTCACTGATG
CATGGGATGAAGGATTACATCCATACAAAGCAGTCATCAAGAATAACAAACTCTATGGTC
GTGGTGGTGCAGATGATGGTTATTCAACATTTGCTTCAATCTCTGCAATCAAAGCATTGC
AAGAACAATCAATTCCACATGATCGTTATGTAATTATCATTGAAGGTTCCGAAGAATCTG
GTTCAATCCATTTACCACAATATGTTGAGAAGTTCCAAGCTGAAA----------GATTA
CACGTTGAAATTCCACAACATCGTTTAGATCAAATCGCAAAATGTGCTGAAATTTTAGGC
GAAACCATCTATGATGAATTCTCATGGTACAAAAATACCACTCCAGTCACTAAAGATTTA
ACCCAATTGATGATCAACAAAACTTGGTATCCAACTATTTGCATCACCGGTGCTGAAGGT
ATTCCACACACTTCAAATGCTGGTAATGTCATGAGAACTCACACCACCGTTAAAGTTAGT
GTTCGTTTACCACCATCATTCAAAGCAGCTGATGCATCAACTGTATTAAAAGAAATTTTC
GAAACTAATCCACCATATGGTGCTGAAGTTACCTTCAAAATGGATAAATGTGCTTCAGGT
TGGGATTCACCACAAACTAGACCAGAATTAGAAAAAGCATTAGGAGAAGCTTCAAATCTT
TTCTTTGGCAAAGACCACGTATACATGGGTGAAGGTGGTTCCATCCCATTCATGAAAATG
TTACATGACCGTTTCAATTGTCAATTTATCGTTACTGGTTTATTAGGTCCAGGTTCAAAT
GCTCATGGTCCAAATGAATTCTTAGATATTCCATTTGCCAAGAAATTATTAAGTTGTGTT
ATTTATTTATTAGATGCTCATTCCAAGTTNATTAAATAAATAAACCT
Length of connected seq. 1237
Full length Seq ID -
Full length Seq. -
Length of full length seq. -