VFB422
Library VF
(Link to library)
Clone ID VFB422
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16320-1
Original site URL
Representative seq. ID VFB422E
(Link to Original site)
Representative DNA sequence
>VFB422 (VFB422Q) /CSM/VF/VFB4-A/VFB422Q.Seq.d/
AATTTTATATTGTTCTTTTATTTTTTTTNCTTAATATATATATAATNACAAAATGGCAAG
AAGATATGATCAAAGAACAACAATTTTTTCACCAGAAGGTCGTGTTTATCAAGTAGAATA
TGCAATGACAGCAATTAGACATGCAGGTGCAACAGTTGGTATTTTAGCAAAAGATGGTAT
TGTTTTAGCAGCAGAGAAAAAGACCACAGCAAAACTTTTAGATTCATCAACATCAATCTC
TGAAAAGATGTTTAAGATTGATGAACATGTTGTTTGTGCAGTCGCTGGTATCACATCCGA
TGCCAACATTTTAATCAATTATGCAAGATTATCATCACAACGTTTCTTTTATCAATATCA
AGAACCAATGCCAGTCGAACAATTGGTCTCTCAAATTTGTGATACAAAACAAGGTTACAC
TCAATATGGTGGTTTACGTCCATTTGGTGTCTCATTCCTTTATGCTGGTTGGGATCGTCA
TTATGGTTTCCAATTATATCAATCTGATCCTTCTGGTAATTTTGCTGGTTGGAAAGCTAC
CTCAATTGGTGGTGAAAATAGTCAAGTTGCACAATCAGTTTTAAGATCAAATTATAAACC
AGATATTTCATTAAAAGAAGCCCTTCAATTGGCTCTCAAAGTTTTAACAAAAACTATGGA
TCGTTCAAATATCAACAGTGAAAAATTAGAATTCTCTTATTTCACTAAACAAGGTGACAA
TGTTGTTTATCATATTTTTACTGCAGCAGAATTAGATGCTTTCATTAAAGAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence
ilycsfiffx*YIYNXKMARRYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGI
VLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQ
EPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKAT
SIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSEKLEFSYFTKQGDN
VVYHIFTAAELDAFIKE


Translated Amino Acid sequence (All Frames)
Frame A:
nfilffyffxliyi*xqngkki*sknnnfftrrsclssricndsn*tcrcnswyfskrwy
cfssrekdhsktfrfininl*kdv*d**tcclcsrwyhircqhfnqlckiiittfllsis
rtnasrtiglsnl*yktrlhsiwwftsiwcliplcwlgsslwfpiisi*sfw*fcwlesy
lnww*k*ssctisfkikl*tryfikrspsigsqsfnknygsfkyqq*kirillfh*tr*q
cclsyfycsrircfh*r


Frame B:
ilycsfiffx*YIYNXKMARRYDQRTTIFSPEGRVYQVEYAMTAIRHAGATVGILAKDGI
VLAAEKKTTAKLLDSSTSISEKMFKIDEHVVCAVAGITSDANILINYARLSSQRFFYQYQ
EPMPVEQLVSQICDTKQGYTQYGGLRPFGVSFLYAGWDRHYGFQLYQSDPSGNFAGWKAT
SIGGENSQVAQSVLRSNYKPDISLKEALQLALKVLTKTMDRSNINSEKLEFSYFTKQGDN
VVYHIFTAAELDAFIKE


Frame C:
fyivllffxlniyixtkwqedmikeqqffhqkvvfik*nmq*qqldmqvqqlvf*qkmvl
f*qqrkrpqqnf*ihqhqslkrclrlmnmlfvqslvshpmptf*simqdyhhnvsfinik
nqcqsnnwslkfviqnkvtlnmvvyvhlvshsfmlvgivimvsnyinlillvillvgklp
qlvvkivklhnqf*dqiinqifh*kkpfnwlskf*qklwivqistvkn*nslislnkvtm
lfiifllqqn*mlslkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB422 (VFB422Q) /CSM/VF/VFB4-A/VFB422Q.Seq.d/ 1473 0.0
VFI306 (VFI306Q) /CSM/VF/VFI3-A/VFI306Q.Seq.d/ 1469 0.0
AFH827 (AFH827Q) /CSM/AF/AFH8-B/AFH827Q.Seq.d/ 1469 0.0
VFA481 (VFA481Q) /CSM/VF/VFA4-D/VFA481Q.Seq.d/ 1449 0.0
VFA406 (VFA406Q) /CSM/VF/VFA4-A/VFA406Q.Seq.d/ 1376 0.0
VFJ709 (VFJ709Q) /CSM/VF/VFJ7-A/VFJ709Q.Seq.d/ 1374 0.0
SFG154 (SFG154Q) /CSM/SF/SFG1-C/SFG154Q.Seq.d/ 1356 0.0
AHM432 (AHM432Q) /CSM/AH/AHM4-B/AHM432Q.Seq.d/ 42 0.012
VSI254 (VSI254Q) /CSM/VS/VSI2-C/VSI254Q.Seq.d/ 38 0.19
VSH450 (VSH450Q) /CSM/VS/VSH4-C/VSH450Q.Seq.d/ 38 0.19

own update 2002.12.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

L22212|L22212.1 Dictyostelium discoideum proteasome DD4 gene, complete cds. 1469 0.0 1
AJ291733|AJ291733.1 Nicotiana tabacum partial mRNA for putative alpha3 proteasome subunit (a3 gene). 52 3e-22 4
AX536828|AX536828.1 Sequence 429 from Patent WO02064766. 72 1e-21 4
AW472197|AW472197.1 si21b11.y1 Gm-c1029 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1029-1846 5' similar to SW:PRC9_SPIOL P52427 PROTEASOME 27 KD SUBUNIT ;, mRNA sequence. 88 6e-21 3
BF596899|BF596899.1 su92h06.y1 Gm-c1055 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1055-2291 5' similar to TR:O82530 O82530 PROTEASOME ALPHA SUBUNIT. ;, mRNA sequence. 86 3e-20 3
AW734093|AW734093.1 sk86f03.y1 Gm-c1035 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1035-246 5' similar to SW:PRC9_SPIOL P52427 PROTEASOME 27 KD SUBUNIT ;, mRNA sequence. 86 3e-20 3
BE579060|BE579060.1 kq53g06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:Y110A7A.F CE23243 ;, mRNA sequence. 78 3e-20 2
BM954104|BM954104.1 sam70c02.y1 Gm-c1069 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1069-4708 5' similar to SW:PRC9_SPIOL P52427 PROTEASOME 27 KD SUBUNIT ;, mRNA sequence. 86 5e-19 2
BE029492|BE029492.1 kp28h03.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to WP:Y110A7A.F CE23243 ;, mRNA sequence. 78 8e-18 2
AI938326|AI938326.1 sc43b11.y1 Gm-c1014 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1014-1846 5' similar to SW:PRC9_SPIOL P52427 PROTEASOME 27 KD SUBUNIT ;, mRNA sequence. 78 1e-16 2
dna update 2003. 8.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O81148) RecName: Full=Proteasome subunit alpha type-4; ... 316 6e-85
EF146021_1(EF146021|pid:none) Populus trichocarpa clone WS0114_P... 315 1e-84
DQ228349_1(DQ228349|pid:none) Solanum tuberosum clone 149D10 pro... 315 1e-84
Y13181_1(Y13181|pid:none) Arabidopsis thaliana mRNA for proteaso... 314 2e-84
(P52427) RecName: Full=Proteasome subunit alpha type-4; ... 314 2e-84
GM694693_1(GM694693|pid:none) Sequence 249 from Patent EP1953235. 314 2e-84
GM694699_1(GM694699|pid:none) Sequence 255 from Patent EP1953235. 313 3e-84
(O82530) RecName: Full=Proteasome subunit alpha type-4; ... 312 9e-84
EF081846_1(EF081846|pid:none) Picea sitchensis clone WS0276_M22 ... 300 4e-80
(P0C8Y9) RecName: Full=Proteasome subunit alpha type-4-2; ... 298 2e-79
protein update 2009. 7.10
PSORT

psg: 0.58 gvh: 0.42 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.32 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: nuclear
4.0 %: plasma membrane
4.0 %: peroxisomal

>> prediction for VFB422 is cyt

5' end seq. ID VFB422F
5' end seq.
>VFB422F.Seq
AATTTTATATTGTTCTTTTATTTTTTTTNCTTAATATATATATAATNACAAAATGGCAAG
AAGATATGATCAAAGAACAACAATTTTTTCACCAGAAGGTCGTGTTTATCAAGTAGAATA
TGCAATGACAGCAATTAGACATGCAGGTGCAACAGTTGGTATTTTAGCAAAAGATGGTAT
TGTTTTAGCAGCAGAGAAAAAGACCACAGCAAAACTTTTAGATTCATCAACATCAATCTC
TGAAAAGATGTTTAAGATTGATGAACATGTTGTTTGTGCAGTCGCTGGTATCACATCCGA
TGCCAACATTTTAATCAATTATGCAAGATTATCATCACAACGTTTCTTTTATCAATATCA
AGAACCAATGCCAGTCGAACAATTGGTCTCTCAAATTTGTGATACAAAACAAGGTTACAC
TCAATATGGTGGTTTACGTCCATTTGGTGTCTCATTCCTTTATGCTGGTTGGGATCGTCA
TTATGGTTTCCAATTATATCAATCTGATCCTTCTGGTAATTTTGCTGGTTGGAAAGCTAC
CTCAATTGGTGGTGAAAATAGTCAAGTTGCACAATCAGTTTTAAGATCAAATTA------
----
Length of 5' end seq. 594
3' end seq. ID VFB422Z
3' end seq.
>VFB422Z.Seq
----------ATGCAATGACAGCAATTAGACATGCAGGTGCAACAGTTGGTATTTTAGCA
AAAGATGGTATTGTTTTAGCAGCAGAGAAAAAGACCACAGCAAAACTTTTAGATTCATCA
ACATCAATCTCTGAAAAGATGTTTAAGATTGATGAACATGTTGTTTGTGCAGTCGCTGGT
ATCACATCCGATGCCAACATTTTAATCAATTATGCAAGATTATCATCACAACGTTTCTTT
TATCAATATCAAGAACCAATGCCAGTCGAACAATTGGTCTCTCAAATTTGTGATACAAAA
CAAGGTTACACTCAATATGGTGGTTTACGTCCATTTGGTGTCTCATTCCTTTATGCTGGT
TGGGATCGTCATTATGGTTTCCAATTATATCAATCTGATCCTTCTGGTAATTTTGCTGGT
TGGAAAGCTACCTCAATTGGTGGTGAAAATAGTCAAGTTGCACAATCAGTTTTAAGATCA
AATTATAAACCAGATATTTCATTAAAAGAAGCCCTTCAATTGGCTCTCAAAGTTTTAACA
AAAACTATGGATCGTTCAAATATCAACAGTGAAAAATTAGAATTCTCTTATTTCACTAAA
CAAGGTGACAATGTTGTTTATCATATTTTTACTGCAGCAGAATTAGATGCTTTCATTAAA
GAAA
Length of 3' end seq. 654
Connected seq. ID VFB422P
Connected seq.
>VFB422P.Seq
AATTTTATATTGTTCTTTTATTTTTTTTNCTTAATATATATATAATNACAAAATGGCAAG
AAGATATGATCAAAGAACAACAATTTTTTCACCAGAAGGTCGTGTTTATCAAGTAGAATA
TGCAATGACAGCAATTAGACATGCAGGTGCAACAGTTGGTATTTTAGCAAAAGATGGTAT
TGTTTTAGCAGCAGAGAAAAAGACCACAGCAAAACTTTTAGATTCATCAACATCAATCTC
TGAAAAGATGTTTAAGATTGATGAACATGTTGTTTGTGCAGTCGCTGGTATCACATCCGA
TGCCAACATTTTAATCAATTATGCAAGATTATCATCACAACGTTTCTTTTATCAATATCA
AGAACCAATGCCAGTCGAACAATTGGTCTCTCAAATTTGTGATACAAAACAAGGTTACAC
TCAATATGGTGGTTTACGTCCATTTGGTGTCTCATTCCTTTATGCTGGTTGGGATCGTCA
TTATGGTTTCCAATTATATCAATCTGATCCTTCTGGTAATTTTGCTGGTTGGAAAGCTAC
CTCAATTGGTGGTGAAAATAGTCAAGTTGCACAATCAGTTTTAAGATCAAATTA------
----ATGCAATGACAGCAATTAGACATGCAGGTGCAACAGTTGGTATTTTAGCAAAAGAT
GGTATTGTTTTAGCAGCAGAGAAAAAGACCACAGCAAAACTTTTAGATTCATCAACATCA
ATCTCTGAAAAGATGTTTAAGATTGATGAACATGTTGTTTGTGCAGTCGCTGGTATCACA
TCCGATGCCAACATTTTAATCAATTATGCAAGATTATCATCACAACGTTTCTTTTATCAA
TATCAAGAACCAATGCCAGTCGAACAATTGGTCTCTCAAATTTGTGATACAAAACAAGGT
TACACTCAATATGGTGGTTTACGTCCATTTGGTGTCTCATTCCTTTATGCTGGTTGGGAT
CGTCATTATGGTTTCCAATTATATCAATCTGATCCTTCTGGTAATTTTGCTGGTTGGAAA
GCTACCTCAATTGGTGGTGAAAATAGTCAAGTTGCACAATCAGTTTTAAGATCAAATTAT
AAACCAGATATTTCATTAAAAGAAGCCCTTCAATTGGCTCTCAAAGTTTTAACAAAAACT
ATGGATCGTTCAAATATCAACAGTGAAAAATTAGAATTCTCTTATTTCACTAAACAAGGT
GACAATGTTGTTTATCATATTTTTACTGCAGCAGAATTAGATGCTTTCATTAAAGAAA
Length of connected seq. 1248
Full length Seq ID VFB422E
Full length Seq.
>VFB422E.Seq
AATTTTATATTGTTCTTTTATTTTTTTTNCTTAATATATATATAATNACAAAATGGCAAG
AAGATATGATCAAAGAACAACAATTTTTTCACCAGAAGGTCGTGTTTATCAAGTAGAATA
TGCAATGACAGCAATTAGACATGCAGGTGCAACAGTTGGTATTTTAGCAAAAGATGGTAT
TGTTTTAGCAGCAGAGAAAAAGACCACAGCAAAACTTTTAGATTCATCAACATCAATCTC
TGAAAAGATGTTTAAGATTGATGAACATGTTGTTTGTGCAGTCGCTGGTATCACATCCGA
TGCCAACATTTTAATCAATTATGCAAGATTATCATCACAACGTTTCTTTTATCAATATCA
AGAACCAATGCCAGTCGAACAATTGGTCTCTCAAATTTGTGATACAAAACAAGGTTACAC
TCAATATGGTGGTTTACGTCCATTTGGTGTCTCATTCCTTTATGCTGGTTGGGATCGTCA
TTATGGTTTCCAATTATATCAATCTGATCCTTCTGGTAATTTTGCTGGTTGGAAAGCTAC
CTCAATTGGTGGTGAAAATAGTCAAGTTGCACAATCAGTTTTAAGATCAAATTATAAACC
AGATATTTCATTAAAAGAAGCCCTTCAATTGGCTCTCAAAGTTTTAACAAAAACTATGGA
TCGTTCAAATATCAACAGTGAAAAATTAGAATTCTCTTATTTCACTAAACAAGGTGACAA
TGTTGTTTATCATATTTTTACTGCAGCAGAATTAGATGCTTTCATTAAAGAAA
Length of full length seq. 773