AFM168
Library AF
(Link to library)
Clone ID AFM168
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence
>AFM168 (AFM168Q) /CSM/AF/AFM1-C/AFM168Q.Seq.d/
ATTAAACTTTTTGTCACATATATAATTAAATAAAATGTCAGAAAGACAAAAAGATGGAGA
ATATGGTGTATTTGTTTCCGATATCGCAAGAGGTGTAACAGATGAACAATTAAAAGAAGA
GTTTTCAAAGATCGGTGATGTTTTAGAAGCTGTAGTTGTAAAGAATAAACATTCTGGTGA
AACTAAAGGTTATGGTTTTGTTAAATTTTATCATATGGCCGATGCTCAACATGCAATTGA
AACACCAAATCCACCATTATTTAAAGATGGTATTACAGGCAAACCACAAATGGTAAAAGT
TACTTTAGCAGATTCAAAAAATACTCTTTACATTGGTCATATTCCAAAAGGTTTAACTGA
AAAAGAAGTAAGAGCAGAATTAGAAGAGATTGGTATGTGCACACTTAAATCATTTGAATT
TGATGGACCATCAAAACTTTATGGATATGCACAATTTAAAGATCATGAAACAACAATTAA
AGCAATTAAATCAATTCAAAAATCTAAGTATACAGCATCACTTACACCAAGCAAGAGATC
AAATGATGATGGAAAATCACCAACAACCAAAGTATTATTTGTXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence
lnflshi*LNKMSERQKDGEYGVFVSDIARGVTDEQLKEEFSKIGDVLEAVVVKNKHSGE
TKGYGFVKFYHMADAQHAIETPNPPLFKDGITGKPQMVKVTLADSKNTLYIGHIPKGLTE
KEVRAELEEIGMCTLKSFEFDGPSKLYGYAQFKDHETTIKAIKSIQKSKYTASLTPSKRS
NDDGKSPTTKVLF---


Translated Amino Acid sequence (All Frames)
Frame A:
iklfvtyiik*nvrktkrwriwcicfryrkrcnr*tikrrvfkdr*cfrscscke*tfw*
n*rlwfc*ilsygrcstcn*ntkstii*rwyyrqttngksyfsrfkkyslhwsyskrfn*
krsksrirrdwyvht*ii*i*wtiktlwicti*rs*nnn*sn*inski*vysitytkqei
k**wkitnnqsii---


Frame B:
lnflshi*LNKMSERQKDGEYGVFVSDIARGVTDEQLKEEFSKIGDVLEAVVVKNKHSGE
TKGYGFVKFYHMADAQHAIETPNPPLFKDGITGKPQMVKVTLADSKNTLYIGHIPKGLTE
KEVRAELEEIGMCTLKSFEFDGPSKLYGYAQFKDHETTIKAIKSIQKSKYTASLTPSKRS
NDDGKSPTTKVLF---


Frame C:
*tfchiyn*ikcqkdkkmenmvylfpisqev*qmnn*kksfqrsvmf*kl*l*rinilvk
lkvmvllnfiiwpmlnmqlkhqihhylkmvlqanhkw*kll*qiqkilftlvifqkv*lk
kk*eqn*krlvcahlnhlnlmdhqnfmdmhnlkimkqqlkqlnqfknlsiqhhlhqardq
mmmenhqqpkyyl---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ240 (SFJ240Q) /CSM/SF/SFJ2-B/SFJ240Q.Seq.d/ 1154 0.0
SFD572 (SFD572Q) /CSM/SF/SFD5-C/SFD572Q.Seq.d/ 1154 0.0
CFI665 (CFI665Q) /CSM/CF/CFI6-C/CFI665Q.Seq.d/ 1154 0.0
CFD133 (CFD133Q) /CSM/CF/CFD1-B/CFD133Q.Seq.d/ 1154 0.0
CFC306 (CFC306Q) /CSM/CF/CFC3-A/CFC306Q.Seq.d/ 1154 0.0
AFM766 (AFM766Q) /CSM/AF/AFM7-C/AFM766Q.Seq.d/ 1154 0.0
AFM168 (AFM168Q) /CSM/AF/AFM1-C/AFM168Q.Seq.d/ 1154 0.0
AFH220 (AFH220Q) /CSM/AF/AFH2-A/AFH220Q.Seq.d/ 1154 0.0
VFE796 (VFE796Q) /CSM/VF/VFE7-D/VFE796Q.Seq.d/ 1148 0.0
AFD663 (AFD663Q) /CSM/AF/AFD6-C/AFD663Q.Seq.d/ 1148 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ388266) Dictyostelium discoideum cDNA clone:dds8o17, 5' e... 1154 0.0 1
(BJ361727) Dictyostelium discoideum cDNA clone:ddc18a18, 5' ... 1154 0.0 1
(BJ360664) Dictyostelium discoideum cDNA clone:ddc7a09, 5' e... 1154 0.0 1
(BJ329859) Dictyostelium discoideum cDNA clone:dda26d17, 5' ... 1154 0.0 1
(BJ329588) Dictyostelium discoideum cDNA clone:dda25g17, 5' ... 1154 0.0 1
(BJ326264) Dictyostelium discoideum cDNA clone:dda15g06, 5' ... 1154 0.0 1
(BJ324911) Dictyostelium discoideum cDNA clone:dda8m16, 5' e... 1148 0.0 1
(AU060816) Dictyostelium discoideum slug cDNA, clone SLB582. 1142 0.0 1
(BJ362353) Dictyostelium discoideum cDNA clone:ddc21n07, 5' ... 1140 0.0 1
(BJ391390) Dictyostelium discoideum cDNA clone:dds13j15, 5' ... 1128 0.0 1
dna update 2009. 4. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AY633610_1(AY633610|pid:none) Homo sapiens aging-associated gene... 77 4e-13
AY189904_1(AY189904|pid:none) Gallus gallus TIAR mRNA, complete ... 77 4e-13
(Q01085) RecName: Full=Nucleolysin TIAR; AltName: Full=TIA-1-rel... 77 4e-13
AK290984_1(AK290984|pid:none) Homo sapiens cDNA FLJ75459 complet... 77 4e-13
(P52912) RecName: Full=Nucleolysin TIA-1; AltName: Full=RNA-bind... 75 1e-12
AK028340_1(AK028340|pid:none) Mus musculus 12 days embryo embryo... 75 1e-12
AK291239_1(AK291239|pid:none) Homo sapiens cDNA FLJ76290 complet... 75 1e-12
CR942663_2(CR942663|pid:none) Xenopus tropicalis finished cDNA, ... 75 2e-12
AB220469_1(AB220469|pid:none) Macaca fascicularis mRNA, clone Qf... 74 2e-12
(P31483) RecName: Full=Nucleolysin TIA-1 isoform p40; AltName: F... 74 2e-12
protein update 2009. 4. 5
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM168 is

5' end seq. ID AFM168F
5' end seq.
>AFM168F.Seq
ATTAAACTTTTTGTCACATATATAATTAAATAAAATGTCAGAAAGACAAAAAGATGGAGA
ATATGGTGTATTTGTTTCCGATATCGCAAGAGGTGTAACAGATGAACAATTAAAAGAAGA
GTTTTCAAAGATCGGTGATGTTTTAGAAGCTGTAGTTGTAAAGAATAAACATTCTGGTGA
AACTAAAGGTTATGGTTTTGTTAAATTTTATCATATGGCCGATGCTCAACATGCAATTGA
AACACCAAATCCACCATTATTTAAAGATGGTATTACAGGCAAACCACAAATGGTAAAAGT
TACTTTAGCAGATTCAAAAAATACTCTTTACATTGGTCATATTCCAAAAGGTTTAACTGA
AAAAGAAGTAAGAGCAGAATTAGAAGAGATTGGTATGTGCACACTTAAATCATTTGAATT
TGATGGACCATCAAAACTTTATGGATATGCACAATTTAAAGATCATGAAACAACAATTAA
AGCAATTAAATCAATTCAAAAATCTAAGTATACAGCATCACTTACACCAAGCAAGAGATC
AAATGATGATGGAAAATCACCAACAACCAAAGTATTATTTGTXXXXXXXXXX
Length of 5' end seq. 592
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -