>VFB351 (VFB351Q) /CSM/VF/VFB3-C/VFB351Q.Seq.d/
ATAAACTGATATTGTTGTACAACAATTTACAATTTTATTTATTTTTTTAAAAAAAAAAAA
AAAAAAAAAAAATTTNCCCCCCNAAAAAAANTAAAAAANTAAAAAAAAAAXXXXXXXXXX
GATAATTTTTACTACACTGGCGTTACAGTCTCCAATTGCCAATTCTCAAAATTTATACAA
CACGAAAATAACAAAATCAATGCTCCAAGAGAATCTGCAATTCTACATATCTCAACTATG
TATTTAATTAATAACATTATCACCTCAAACTACAATGATCCAACAAATTCATTTTTTTCA
TTCCAAAATTTCATTGGTGCGTCTTATACCTTGGATTTTAATACTATATCTTCATCAGGT
AACATCGTTCTCGGTCAAAACAAATCTTTTATTTCTAATCAAAATTCAAATTCCACGAGC
TCTTTCTCAGAACCTCCAAGTGATTTCCAAATAGGGTTTAACACTGAAAATTCACACACT
GATATATTATATTCAAGCGTTTTATCAACCATTCCTTTTGTTGGATCCAATTCAATCTTT
ACTTTNTC

klillynnlqfylff*KKKKKKKIXPPKKXKKXKKK---

---DNFYYTGVTVSNCQFSKFIQHENNKINAPRESAILHISTMYLINNIITSNYNDPTNS
FFSFQNFIGASYTLDFNTISSSGNIVLGQNKSFISNQNSNSTSSFSEPPSDFQIGFNTEN
SHTDILYSSVLSTIPFVGSNSIFTX

Frame A:
in*yccttiynfiyffkkkkkkkkfxpxkkxkx*kk---

---DNFYYTGVTVSNCQFSKFIQHENNKINAPRESAILHISTMYLINNIITSNYNDPTNS
FFSFQNFIGASYTLDFNTISSSGNIVLGQNKSFISNQNSNSTSSFSEPPSDFQIGFNTEN
SHTDILYSSVLSTIPFVGSNSIFTX

Frame B:
*tdivvqqftilfiflkkkkkkknxppxkx*kxkkk---

---iifttlalqspiansqnlyntkitksmlqenlqfyisqlci*litlspqttmiqqih
ffhskislvrlipwililylhqvtsfsvktnllflikiqipralsqnlqvisk*gltlki
htliyyiqafyqpfllldpiqsllx

Frame C:
klillynnlqfylff*KKKKKKKIXPPKKXKKXKKK---

---*fllhwryslqlpilkiyttrk*qnqcskricnstylnyvfn**hyhlklq*snkfi
ffipkfhwcvlylgf*yyifir*hrsrskqifyf*skfkfhelflrtsk*fpnrv*h*kf
th*yiifkrfinhsfcwiqfnlyfx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB351 (VFB351Q) /CSM/VF/VFB3-C/VFB351Q.Seq.d/                        801   0.0
VFG368 (VFG368Q) /CSM/VF/VFG3-C/VFG368Q.Seq.d/                        795   0.0
VFD820 (VFD820Q) /CSM/VF/VFD8-A/VFD820Q.Seq.d/                        793   0.0
VFC639 (VFC639Q) /CSM/VF/VFC6-B/VFC639Q.Seq.d/                        777   0.0
SFE589 (SFE589Q) /CSM/SF/SFE5-D/SFE589Q.Seq.d/                        767   0.0
VFK894 (VFK894Q) /CSM/VF/VFK8-D/VFK894Q.Seq.d/                        464   e-130
SLJ337 (SLJ337Q) /CSM/SL/SLJ3-B/SLJ337Q.Seq.d/                        184   9e-46
SLF358 (SLF358Q) /CSM/SL/SLF3-C/SLF358Q.Seq.d/                        113   3e-24
SFJ884 (SFJ884Q) /CSM/SF/SFJ8-D/SFJ884Q.Seq.d/                        113   3e-24
VFN661 (VFN661Q) /CSM/VF/VFN6-C/VFN661Q.Seq.d/                         96   7e-19

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF147054|AF147054.1 Paratrechina sp. ACDN cytochrome c oxidase subunit 1 (COI) gene, partial cds; tRNA-Leu gene, complete sequence; and cytochrome c oxidase subunit 2 (COII) gene, partial cds; mitochondrial genes for mitochondrial products.    44  0.009  2
AF275229|AF275229.1 Anoecia fulviabdominalis 12S small subunit ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S large subunit ribosomal RNA gene, partial sequence; mitochondrial genes for mitochondrial products.    36  0.009  3
CC794837|CC794837.1 SALK_056909.54.75.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_056909.54.75.x, genomic survey sequence.    32  0.12  3
AL163572|AL163572.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T22N19 (ESSA  project).    36  0.24  4
AP006142|AP006142.1 Lotus corniculatus var. japonicus genomic DNA, chromosome 2, clone:LjT08A24, TM0250.    40  0.28  3
BX000443|BX000443.5 Zebrafish DNA sequence from clone DKEY-5K18 in linkage group 17.    40  0.30  6
AC093266|AC093266.2 Homo sapiens chromosome 5 clone RP11-27O20, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44  0.43  3
AE014819|AE014819.1 Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence.    36  0.46  6
AC097009|AC097009.2 Pan troglodytes clone RP43-169E8, WORKING DRAFT SEQUENCE, 4 ordered pieces.    46  0.46  1
BQ018543|BQ018543.1 UI-H-DH1-awu-i-17-0-UI.s1 NCI_CGAP_DH1 Homo sapiens cDNA clone IMAGE:5823832 3', mRNA sequence.    46  0.46  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ168618_2(DQ168618|pid:none) Oleria aquata cytochrome oxidase s...    35   0.98
CP000682_931(CP000682|pid:none) Metallosphaera sedula DSM 5348, ...    35   1.3
FJ468729_2(FJ468729|pid:none) Napeogenes stella opacella voucher...    34   2.9
FJ468738_2(FJ468738|pid:none) Napeogenes duessa n. ssp. 1 ME-200...    34   2.9
FJ468737_2(FJ468737|pid:none) Napeogenes duessa jamariensis vouc...    34   2.9
CP000818_71(CP000818|pid:none) Lysinibacillus sphaericus C3-41 p...    34   2.9
FJ468790_2(FJ468790|pid:none) Napeogenes stella ssp. ME-2009 vou...    34   2.9
FJ468736_2(FJ468736|pid:none) Napeogenes duessa incas voucher 05...    34   2.9
EU069085_2(EU069085|pid:none) Napeogenes duessa incas isolate 5-...    34   2.9
DQ157521_2(DQ157521|pid:none) Napeogenes duessa voucher E-46-2 c...    34   2.9

 psg: 0.51  gvh: 0.29  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.68  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 88.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for VFB351 is nuc

>VFB351F.Seq
ATAAACTGATATTGTTGTACAACAATTTACAATTTTATTTATTTTTTTAAAAAAAAAAAA
AAAAAAAAAAAATTTNCCCCCCNAAAAAAANTAAAAAANTAAAAAAAAAA----------

>VFB351Z.Seq
----------GATAATTTTTACTACACTGGCGTTACAGTCTCCAATTGCCAATTCTCAAA
ATTTATACAACACGAAAATAACAAAATCAATGCTCCAAGAGAATCTGCAATTCTACATAT
CTCAACTATGTATTTAATTAATAACATTATCACCTCAAACTACAATGATCCAACAAATTC
ATTTTTTTCATTCCAAAATTTCATTGGTGCGTCTTATACCTTGGATTTTAATACTATATC
TTCATCAGGTAACATCGTTCTCGGTCAAAACAAATCTTTTATTTCTAATCAAAATTCAAA
TTCCACGAGCTCTTTCTCAGAACCTCCAAGTGATTTCCAAATAGGGTTTAACACTGAAAA
TTCACACACTGATATATTATATTCAAGCGTTTTATCAACCATTCCTTTTGTTGGATCCAA
TTCAATCTTTACTTTNTC

>VFB351P.Seq
ATAAACTGATATTGTTGTACAACAATTTACAATTTTATTTATTTTTTTAAAAAAAAAAAA
AAAAAAAAAAAATTTNCCCCCCNAAAAAAANTAAAAAANTAAAAAAAAAA----------
GATAATTTTTACTACACTGGCGTTACAGTCTCCAATTGCCAATTCTCAAAATTTATACAA
CACGAAAATAACAAAATCAATGCTCCAAGAGAATCTGCAATTCTACATATCTCAACTATG
TATTTAATTAATAACATTATCACCTCAAACTACAATGATCCAACAAATTCATTTTTTTCA
TTCCAAAATTTCATTGGTGCGTCTTATACCTTGGATTTTAATACTATATCTTCATCAGGT
AACATCGTTCTCGGTCAAAACAAATCTTTTATTTCTAATCAAAATTCAAATTCCACGAGC
TCTTTCTCAGAACCTCCAAGTGATTTCCAAATAGGGTTTAACACTGAAAATTCACACACT
GATATATTATATTCAAGCGTTTTATCAACCATTCCTTTTGTTGGATCCAATTCAATCTTT
ACTTTNTC