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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM166
Library AF
(Link to library)
Clone ID AFM166
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM166P
(Link to Original site)
Representative DNA sequence 
>AFM166 (AFM166Q) /CSM/AF/AFM1-C/AFM166Q.Seq.d/
ATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAAACAAAG
TTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATTTAGTTA
ACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTCCATACG
CTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTATTCCTC
GTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGTGTAGAG
GTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTAACGTCA
ACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCCTCGTTA
TGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAAT
CCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCT
ACGCTGATGTCACCAAAGTCATCGACTCCAXXXXXXXXXXAGCCCTCGTTATGGCTCGTG
GTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAATCCCGTTGAC
ACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCTACGCTGAT
GTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAAGAAACAGA
CGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAAGACTACCGTCTCCCAA
GCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTATTAAAA
TTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGCTTTCGAACAA
TTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGTTACACTCTC
CCACGTCCAATGATTGCTAACGCTGATATTGTCAGACTCGTCAACTCTGATGAAATCCAA
GCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCT
AACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCGTCTCAACCCGT
CGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAGAATCAATTA
AGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTTTTAAATAGATT
sequence update 2009. 4. 3
Translated Amino Acid sequence 
ht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYA
GEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVN
QKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAY
ADVTKVIDS---

---ALVMARGHRINGINEVPLVIANESR*hppknqscr*iikenqrlr*chqshrlqtys
cwcw*skkqtlqsp*rsisrrlw*dyrlpslt*hprc*scqrlktqlikistrwslr*ih
hld*irfrtirlnlwylcqiicskerlhsptsndc*r*ycqtrql**npscr*sqqsrrq
tsncpsssf*pikeltcyd*ikpsrrlnpsyss*iikikryqs*qkesiks*iscchfqp
inf*id
Translated Amino Acid sequence (All Frames) 
Frame A:
ithkk*llvhlskslmpktkl*vklssqms*ppqsvqi*ltlstpt*trmlvklmvllht
lvnkpllnhgvlvvlslvflvfqvqvhtvqvkvpsvtcvevvvcmvqtrpgdvgivklts
tkrdtllsql*lpqlsqpslwlvvtesmvsmksh*slptnpltpskkpklplny*rkstp
tlmspksstp---

---sprygswsqnqwyq*spishcqripltpskkpklplny*rkstptlmspksstpnif
vlvlvkqetdvtksvkvh*ssslvrlpspkpyvtsqvlklptsqdsty*n*hqvvt*vds
ssglnplsnn*tqplvplpnhllkrkvtlshvq*lltlilsdsstlmksklplepaksss
nvqlpqfvvlth*rtyvl*ln*tqppsqpvvlklnh*nqkvsklakrin*eln*llplst
nkflnr

Frame B:
shikndyssicpsl*cpkqscr*s*apkcldhpnpsrfs*lcphqlkqecssslwccsir
w*tnlc*imgywsccrsysscsrfrytpfrsrclr*hv*rwsyvwskqdletles*s*rq
pkeircclsfsclscpsprygswsqnqwyq*spishcqrir*hppknqscr*iikenqrl
r*chqshrl---

---ALVMARGHRINGINEVPLVIANESR*hppknqscr*iikenqrlr*chqshrlqtys
cwcw*skkqtlqsp*rsisrrlw*dyrlpslt*hprc*scqrlktqlikistrwslr*ih
hld*irfrtirlnlwylcqiicskerlhsptsndc*r*ycqtrql**npscr*sqqsrrq
tsncpsssf*pikeltcyd*ikpsrrlnpsyss*iikikryqs*qkesiks*iscchfqp
inf*id

Frame C:
ht*KMTTRPFVQVFDAQNKVVGKVKLPNVLTTPIRPDLVNFVHTNLNKNARQAYGAAPYA
GEQTSAESWGTGRAVARIPRVPGSGTHRSGQGAFGNMCRGGRMYGPNKTWRRWNRKVNVN
QKRYAVVSALAASAVPALVMARGHRINGINEVPLVIANESVDTLQKTKAAVELLKKINAY
ADVTKVIDS---

---pslwlvvtesmvsmksh*slptnpvdtlqktkaavellkkinayadvtkvidskhir
agagkarnrrykvrkgplvvvsgkttvsqalrnipgvevanvsrlnllklapgghlgrfi
iwtksafeqldstfgtfakssaqkkgytlprpmianadivrlvnsdeiqaavraskvvvk
rptapvrrsnplknlramiklnpaavstrrtqvkslkskgikvskknqlraklvaatfnq
*ifk*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM166 (AFM166Q) /CSM/AF/AFM1-C/AFM166Q.Seq.d/                       2539   0.0
VFL284 (VFL284Q) /CSM/VF/VFL2-D/VFL284Q.Seq.d/                       1449   0.0
VFL809 (VFL809Q) /CSM/VF/VFL8-A/VFL809Q.Seq.d/                       1447   0.0
VFI780 (VFI780Q) /CSM/VF/VFI7-D/VFI780Q.Seq.d/                       1447   0.0
VFF381 (VFF381Q) /CSM/VF/VFF3-D/VFF381Q.Seq.d/                       1447   0.0
VFI549 (VFI549Q) /CSM/VF/VFI5-C/VFI549Q.Seq.d/                       1445   0.0
SFI443 (SFI443Q) /CSM/SF/SFI4-B/SFI443Q.Seq.d/                       1441   0.0
VFF765 (VFF765Q) /CSM/VF/VFF7-C/VFF765Q.Seq.d/                       1439   0.0
VFE335 (VFE335Q) /CSM/VF/VFE3-B/VFE335Q.Seq.d/                       1437   0.0
VFL609 (VFL609Q) /CSM/VF/VFL6-A/VFL609Q.Seq.d/                       1435   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346913) Dictyostelium discoideum cDNA clone:dda25c17, 3' ...  1449   0.0    1
(BJ432529) Dictyostelium discoideum cDNA clone:ddv18p19, 3' ...  1447   0.0    1
(BJ432363) Dictyostelium discoideum cDNA clone:ddv18a13, 3' ...  1445   0.0    1
(BJ434483) Dictyostelium discoideum cDNA clone:ddv24b04, 3' ...  1409   0.0    1
(BJ434078) Dictyostelium discoideum cDNA clone:ddv23g22, 3' ...  1407   0.0    1
(BJ433871) Dictyostelium discoideum cDNA clone:ddv23o03, 3' ...  1400   0.0    1
(BJ402555) Dictyostelium discoideum cDNA clone:dds17f12, 3' ...  1396   0.0    1
(BJ428388) Dictyostelium discoideum cDNA clone:ddv11b21, 3' ...  1392   0.0    1
(BJ430932) Dictyostelium discoideum cDNA clone:ddv9f09, 3' e...  1384   0.0    1
(BJ428833) Dictyostelium discoideum cDNA clone:ddv1l12, 3' e...  1368   0.0    2
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC049520_1(BC049520|pid:none) Danio rerio ribosomal protein L4, ...   214   7e-54
BC041744_1(BC041744|pid:none) Xenopus laevis ribosomal protein L...   212   3e-53
AJ720803_1(AJ720803|pid:none) Gallus gallus mRNA for hypothetica...   212   3e-53
BC054956_1(BC054956|pid:none) Xenopus laevis ribosomal protein L...   212   3e-53
BC167741_1(BC167741|pid:none) Xenopus tropicalis cDNA clone MGC:...   211   3e-53
EU558306_1(EU558306|pid:none) Novocrania anomala putative 60S ri...   211   3e-53
BC043895_1(BC043895|pid:none) Xenopus laevis ribosomal protein L...   211   4e-53
BC063811_1(BC063811|pid:none) Rattus norvegicus ribosomal protei...   211   4e-53
JC4277(JC4277;PC4076)ribosomal protein L4, cytosolic [validated]...   211   4e-53
EU302528_1(EU302528|pid:none) Lineus viridis ribosomal protein r...   211   6e-53
protein update 2009. 4. 5
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM166 is

5' end seq. ID AFM166F
5' end seq. 
>AFM166F.Seq
ATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAAACAAAG
TTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATTTAGTTA
ACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTCCATACG
CTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTATTCCTC
GTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGTGTAGAG
GTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTAACGTCA
ACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCCTCGTTA
TGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAAT
CCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCT
ACGCTGATGTCACCAAAGTCATCGACTCCAXXXXXXXXXX
Length of 5' end seq. 580
3' end seq. ID AFM166Z
3' end seq. 
>AFM166Z.Seq
XXXXXXXXXXAGCCCTCGTTATGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCC
CATTAGTCATTGCCAACGAATCCCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAA
TTATTAAAGAAAATCAACGCCTACGCTGATGTCACCAAAGTCATCGACTCCAAACATATT
CGTGCTGGTGCTGGTAAAGCAAGAAACAGACGTTACAAAGTCCGTAAAGGTCCATTAGTC
GTCGTCTCTGGTAAGACTACCGTCTCCCAAGCCTTACGTAACATCCCAGGTGTTGAAGTT
GCCAACGTCTCAAGACTCAACTTATTAAAATTAGCACCAGGTGGTCACTTAGGTAGATTC
ATCATCTGGACTAAATCCGCTTTCGAACAATTAGACTCAACCTTTGGTACCTTTGCCAAA
TCATCTGCTCAAAAGAAAGGTTACACTCTCCCACGTCCAATGATTGCTAACGCTGATATT
GTCAGACTCGTCAACTCTGATGAAATCCAAGCTGCCGTTAGAGCCAGCAAAGTCGTCGTC
AAACGTCCAACTGCCCCAGTTCGTCGTTCTAACCCATTAAAGAACTTACGTGCTATGATT
AAATTAAACCCAGCCGCCGTCTCAACCCGTCGTACTCAAGTTAAATCATTAAAATCAAAA
GGTATCAAAGTTAGCAAAAAGAATCAATTAAGAGCTAAATTAGTTGCTGCCACTTTCAAC
CAATAAATTTTTAAATAGATT
Length of 3' end seq. 741
Connected seq. ID AFM166P
Connected seq. 
>AFM166P.Seq
ATCACACATAAAAAATGACTACTCGTCCATTTGTCCAAGTCTTTGATGCCCAAAACAAAG
TTGTAGGTAAAGTTAAGCTCCCAAATGTCTTGACCACCCCAATCCGTCCAGATTTAGTTA
ACTTTGTCCACACCAACTTAAACAAGAATGCTCGTCAAGCTTATGGTGCTGCTCCATACG
CTGGTGAACAAACCTCTGCTGAATCATGGGGTACTGGTCGTGCTGTCGCTCGTATTCCTC
GTGTTCCAGGTTCAGGTACACACCGTTCAGGTCAAGGTGCCTTCGGTAACATGTGTAGAG
GTGGTCGTATGTATGGTCCAAACAAGACCTGGAGACGTTGGAATCGTAAAGTTAACGTCA
ACCAAAAGAGATACGCTGTTGTCTCAGCTTTAGCTGCCTCAGCTGTCCCAGCCCTCGTTA
TGGCTCGTGGTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAAT
CCGTTGACACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCT
ACGCTGATGTCACCAAAGTCATCGACTCCA----------AGCCCTCGTTATGGCTCGTG
GTCACAGAATCAATGGTATCAATGAAGTCCCATTAGTCATTGCCAACGAATCCCGTTGAC
ACCCTCCAAAAAACCAAAGCTGCCGTTGAATTATTAAAGAAAATCAACGCCTACGCTGAT
GTCACCAAAGTCATCGACTCCAAACATATTCGTGCTGGTGCTGGTAAAGCAAGAAACAGA
CGTTACAAAGTCCGTAAAGGTCCATTAGTCGTCGTCTCTGGTAAGACTACCGTCTCCCAA
GCCTTACGTAACATCCCAGGTGTTGAAGTTGCCAACGTCTCAAGACTCAACTTATTAAAA
TTAGCACCAGGTGGTCACTTAGGTAGATTCATCATCTGGACTAAATCCGCTTTCGAACAA
TTAGACTCAACCTTTGGTACCTTTGCCAAATCATCTGCTCAAAAGAAAGGTTACACTCTC
CCACGTCCAATGATTGCTAACGCTGATATTGTCAGACTCGTCAACTCTGATGAAATCCAA
GCTGCCGTTAGAGCCAGCAAAGTCGTCGTCAAACGTCCAACTGCCCCAGTTCGTCGTTCT
AACCCATTAAAGAACTTACGTGCTATGATTAAATTAAACCCAGCCGCCGTCTCAACCCGT
CGTACTCAAGTTAAATCATTAAAATCAAAAGGTATCAAAGTTAGCAAAAAGAATCAATTA
AGAGCTAAATTAGTTGCTGCCACTTTCAACCAATAAATTTTTAAATAGATT
Length of connected seq. 1301
Full length Seq ID -
Full length Seq. -
Length of full length seq. -