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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB230
Library VF
(Link to library)
Clone ID VFB230
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U16148-1
Original site URL
Representative seq. ID VFB230P
(Link to Original site)
Representative DNA sequence 
>VFB230 (VFB230Q) /CSM/VF/VFB2-B/VFB230Q.Seq.d/
ATAAAATTTATTTTTATTTTAAAACTTTTTATTTTTTGTATCTATTCTTTCTATTTATTA
AAATGGATGATTTAAATATTTTTAAAAATAATTACTTTAAAGCCGAAATTAATGTTGGAG
GAACAATTATTGAAGACACTCAAAGTGTTAAATGTCTATTCCATGGAATAACTAATGAAC
TAATTAACCTAATTGACAATTCCAAAAAAGGAGACTTTATTTTATTTTGTGTTGCTTGGT
TTACAAATTTAGACATTTTAAAAAAATTAAAATTGGCAAAGAATAAAGGAGTGAGAATAT
TAATTGTGATATTGAAAGAGCCATGGTTAATTAAAAATACAAAACTAATGACAAAATACT
CCAATTTGAATAATATGGATGATCTAGAAAAGAAAGATTACCTTAAAATATTTAAGGAGT
ATGGAAATGAATTTTGCCTAAAAAAAATAGTTGACTGGAACTCTTTAAATTTTGAAGAAG
ATACGGTTCGAGTATGCGGAAAAATTCAAACAAATXXXXXXXXXXGCTAAGGAGAATGTT
CTTGTAAGAACCTCCTCACTTCTTGAAGATGAAGTTGAAGAAGATAAAAAAGTATTCTGG
TTTATGTCAGAAATAATTAAAACTGATACCAGTACTGGTTCCGCAACTGTTAAATTTCCA
ATTGGTTTTAAAGAAAAAATCCCATTCTGTAACATTCAAAGTTCAAAATTAAAATTAGTT
AAATTATTTAAAGATTTTCAAAAGGGTCTTCTTTATATTATTAAAAATAAGGATAAAAAC
AGTTATAAAAGTGGAAAGCTAATAGAAAAAACCAAGAAAGATAATGAAATAATCTTAAAT
TTTGAATTGGTTCATGAAAAAAATAAAATAATTGAAAAGAAATTTAATGGAATAATCTAT
TCTTTGTACTATTCATGTATGGTTTGTATACCCATTCAAGGTCAGCTTCATCTTGATCAA
GAGTACCCAATTGAATTTTATAAAGTTTTAATTCAAATCTTGGACCAATTTCCTTTAAAA
TTACATTTTTATAACCATCCTTTTCATAAATATGATGTCTAAATNAAATNAAATCATTAT
CATTNAAAATGTAACAACTCTTCTACTATCATCCTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KIYFYFKTFYFLYLFFLFIKMDDLNIFKNNYFKAEINVGGTIIEDTQSVKCLFHGITNEL
INLIDNSKKGDFILFCVAWFTNLDILKKLKLAKNKGVRILIVILKEPWLIKNTKLMTKYS
NLNNMDDLEKKDYLKIFKEYGNEFCLKKIVDWNSLNFEEDTVRVCGKIQTN---

---AKENVLVRTSSLLEDEVEEDKKVFWFMSEIIKTDTSTGSATVKFPIGFKEKIPFCNI
QSSKLKLVKLFKDFQKGLLYIIKNKDKNSYKSGKLIEKTKKDNEIILNFELVHEKNKIIE
KKFNGIIYSLYYSCMVCIPIQGQLHLDQEYPIEFYKVLIQILDQFPLKLHFYNHPFHKYD
V*xkxnhyhxkcnnsstiil
Translated Amino Acid sequence (All Frames) 
Frame A:
ikfifilklfifciysfyllkwmi*iflkiitlkpklmleeqllktlkvlnvysme*lmn
*lt*ltipkketlfyfvllglqi*tf*kn*nwqrike*ey*l*y*kshg*lkiqn**qnt
pi*iiwmi*krkitlkylrsmemnfa*kk*ltgtl*ilkkirfeyaekfkq---

---AKENVLVRTSSLLEDEVEEDKKVFWFMSEIIKTDTSTGSATVKFPIGFKEKIPFCNI
QSSKLKLVKLFKDFQKGLLYIIKNKDKNSYKSGKLIEKTKKDNEIILNFELVHEKNKIIE
KKFNGIIYSLYYSCMVCIPIQGQLHLDQEYPIEFYKVLIQILDQFPLKLHFYNHPFHKYD
V*xkxnhyhxkcnnsstiil

Frame B:
*nlflf*nflffvsilsiy*ng*fkyf*k*ll*srn*cwrnny*rhskc*msipwnn**t
n*pn*qfqkrrlyfilcclvykfrhfkkikigke*rsenincdieramvn*kyktndkil
qfe*yg*srkerlp*ni*gvwk*ilpkkns*lelfkf*rrygssmrknsnk---

---lrrmfl*epphflkmklkkikkysglcqk*lklipvlvpqllnfqlvlkkkshsvtf
kvqn*n*lnylkifkrvffillkiriktvikves**kkprkimk*s*ilnwfmkkik*lk
rnlme*silctihvwfvypfkvsfilikstqlnfikf*fkswtnfl*nyifitilfinmm
skxnxiiiixnvttlllss

Frame C:
KIYFYFKTFYFLYLFFLFIKMDDLNIFKNNYFKAEINVGGTIIEDTQSVKCLFHGITNEL
INLIDNSKKGDFILFCVAWFTNLDILKKLKLAKNKGVRILIVILKEPWLIKNTKLMTKYS
NLNNMDDLEKKDYLKIFKEYGNEFCLKKIVDWNSLNFEEDTVRVCGKIQTN---

---*gecscknllts*r*s*rr*ksilvyvrnn*n*yqywfrnc*isnwf*rknpil*hs
kfkikis*ii*rfskgsslyy*k*g*kql*kwkanrknqer**nnlkf*igs*kk*nn*k
ei*wnnlffvlfmyglythsrsass*srvpn*il*sfnsnlgpisfkitfl*psfs*i*c
lnxxkslsxkm*qlfyyhp
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB230 (VFB230Q) /CSM/VF/VFB2-B/VFB230Q.Seq.d/                       1931   0.0
VSH637 (VSH637Q) /CSM/VS/VSH6-B/VSH637Q.Seq.d/                        733   0.0
SLG319 (SLG319Q) /CSM/SL/SLG3-A/SLG319Q.Seq.d/                         50   7e-05
VSI457 (VSI457Q) /CSM/VS/VSI4-C/VSI457Q.Seq.d/                         40   0.071
SSK247 (SSK247Q) /CSM/SS/SSK2-B/SSK247Q.Seq.d/                         40   0.071
SSJ437 (SSJ437Q) /CSM/SS/SSJ4-B/SSJ437Q.Seq.d/                         40   0.071
SSH190 (SSH190Q) /CSM/SS/SSH1-D/SSH190Q.Seq.d/                         40   0.071
SSF677 (SSF677Q) /CSM/SS/SSF6-D/SSF677Q.Seq.d/                         40   0.071
SLG481 (SLG481Q) /CSM/SL/SLG4-D/SLG481Q.Seq.d/                         40   0.071
SFK696 (SFK696Q) /CSM/SF/SFK6-D/SFK696Q.Seq.d/                         40   0.071
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC004709|AC004709.3 Plasmodium falciparum chromosome 12, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    36  5e-06  14
AE014847|AE014847.1 Plasmodium falciparum 3D7 chromosome 12, section 4 of 9 of the complete sequence.    36  2e-05  16
AL844505|AL844505.1 Plasmodium falciparum chromosome  6.          40  9e-05  11
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    36  2e-04  14
AL844506|AL844506.1 Plasmodium falciparum chromosome  7.          38  2e-04  11
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    36  3e-04  12
AX346929|AX346929.1 Sequence 2000 from Patent WO0200928.          38  5e-04  5
AX344565|AX344565.1 Sequence 16 from Patent WO0200932.            38  0.001  12
AE001410|AE001410.2 Plasmodium falciparum 3D7 chromosome 2 section 47 of 73 of the complete sequence.    40  0.001  5
AL445563|AL445563.1 Mycoplasma pulmonis (strain UAB CTIP) complete genome; segment 1/3.    34  0.002  14
dna update 2003. 8.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM448761_1(AM448761|pid:none) Vitis vinifera contig VV78X230071....    94   1e-17
AC010852_17(AC010852|pid:none) Arabidopsis thaliana chromosome 1...    87   8e-16
AK220798_1(AK220798|pid:none) Arabidopsis thaliana mRNA for puta...    87   8e-16
(Q0VD01) RecName: Full=U3 small nucleolar ribonucleoprotein prot...    83   2e-15
AK013334_1(AK013334|pid:none) Mus musculus 10, 11 days embryo wh...    84   5e-15
(Q5PQR5) RecName: Full=U3 small nucleolar ribonucleoprotein prot...    84   5e-15
CR859548_1(CR859548|pid:none) Pongo abelii mRNA; cDNA DKFZp459F0...    84   5e-15
AY383672_1(AY383672|pid:none) Rattus norvegicus LRRGT00017 mRNA,...    82   1e-14
AE017345_118(AE017345|pid:none) Cryptococcus neoformans var. neo...    81   5e-14
AM502248_167(AM502248|pid:none) Leishmania infantum chromosome 30.     81   8e-14
protein update 2009. 6.17
PSORT 

 psg: 0.99  gvh: 0.33  alm: 0.37  top: 0.47  tms: 0.00  mit: 0.27  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: cytoskeletal
	 12.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: peroxisomal

>> prediction for VFB230 is cyt
5' end seq. ID VFB230F
5' end seq. 
>VFB230F.Seq
ATAAAATTTATTTTTATTTTAAAACTTTTTATTTTTTGTATCTATTCTTTCTATTTATTA
AAATGGATGATTTAAATATTTTTAAAAATAATTACTTTAAAGCCGAAATTAATGTTGGAG
GAACAATTATTGAAGACACTCAAAGTGTTAAATGTCTATTCCATGGAATAACTAATGAAC
TAATTAACCTAATTGACAATTCCAAAAAAGGAGACTTTATTTTATTTTGTGTTGCTTGGT
TTACAAATTTAGACATTTTAAAAAAATTAAAATTGGCAAAGAATAAAGGAGTGAGAATAT
TAATTGTGATATTGAAAGAGCCATGGTTAATTAAAAATACAAAACTAATGACAAAATACT
CCAATTTGAATAATATGGATGATCTAGAAAAGAAAGATTACCTTAAAATATTTAAGGAGT
ATGGAAATGAATTTTGCCTAAAAAAAATAGTTGACTGGAACTCTTTAAATTTTGAAGAAG
ATACGGTTCGAGTATGCGGAAAAATTCAAACAAAT----------
Length of 5' end seq. 515
3' end seq. ID VFB230Z
3' end seq. 
>VFB230Z.Seq
----------GCTAAGGAGAATGTTCTTGTAAGAACCTCCTCACTTCTTGAAGATGAAGT
TGAAGAAGATAAAAAAGTATTCTGGTTTATGTCAGAAATAATTAAAACTGATACCAGTAC
TGGTTCCGCAACTGTTAAATTTCCAATTGGTTTTAAAGAAAAAATCCCATTCTGTAACAT
TCAAAGTTCAAAATTAAAATTAGTTAAATTATTTAAAGATTTTCAAAAGGGTCTTCTTTA
TATTATTAAAAATAAGGATAAAAACAGTTATAAAAGTGGAAAGCTAATAGAAAAAACCAA
GAAAGATAATGAAATAATCTTAAATTTTGAATTGGTTCATGAAAAAAATAAAATAATTGA
AAAGAAATTTAATGGAATAATCTATTCTTTGTACTATTCATGTATGGTTTGTATACCCAT
TCAAGGTCAGCTTCATCTTGATCAAGAGTACCCAATTGAATTTTATAAAGTTTTAATTCA
AATCTTGGACCAATTTCCTTTAAAATTACATTTTTATAACCATCCTTTTCATAAATATGA
TGTCTAAATNAAATNAAATCATTATCATTNAAAATGTAACAACTCTTCTACTATCATCCT
T
Length of 3' end seq. 591
Connected seq. ID VFB230P
Connected seq. 
>VFB230P.Seq
ATAAAATTTATTTTTATTTTAAAACTTTTTATTTTTTGTATCTATTCTTTCTATTTATTA
AAATGGATGATTTAAATATTTTTAAAAATAATTACTTTAAAGCCGAAATTAATGTTGGAG
GAACAATTATTGAAGACACTCAAAGTGTTAAATGTCTATTCCATGGAATAACTAATGAAC
TAATTAACCTAATTGACAATTCCAAAAAAGGAGACTTTATTTTATTTTGTGTTGCTTGGT
TTACAAATTTAGACATTTTAAAAAAATTAAAATTGGCAAAGAATAAAGGAGTGAGAATAT
TAATTGTGATATTGAAAGAGCCATGGTTAATTAAAAATACAAAACTAATGACAAAATACT
CCAATTTGAATAATATGGATGATCTAGAAAAGAAAGATTACCTTAAAATATTTAAGGAGT
ATGGAAATGAATTTTGCCTAAAAAAAATAGTTGACTGGAACTCTTTAAATTTTGAAGAAG
ATACGGTTCGAGTATGCGGAAAAATTCAAACAAAT----------GCTAAGGAGAATGTT
CTTGTAAGAACCTCCTCACTTCTTGAAGATGAAGTTGAAGAAGATAAAAAAGTATTCTGG
TTTATGTCAGAAATAATTAAAACTGATACCAGTACTGGTTCCGCAACTGTTAAATTTCCA
ATTGGTTTTAAAGAAAAAATCCCATTCTGTAACATTCAAAGTTCAAAATTAAAATTAGTT
AAATTATTTAAAGATTTTCAAAAGGGTCTTCTTTATATTATTAAAAATAAGGATAAAAAC
AGTTATAAAAGTGGAAAGCTAATAGAAAAAACCAAGAAAGATAATGAAATAATCTTAAAT
TTTGAATTGGTTCATGAAAAAAATAAAATAATTGAAAAGAAATTTAATGGAATAATCTAT
TCTTTGTACTATTCATGTATGGTTTGTATACCCATTCAAGGTCAGCTTCATCTTGATCAA
GAGTACCCAATTGAATTTTATAAAGTTTTAATTCAAATCTTGGACCAATTTCCTTTAAAA
TTACATTTTTATAACCATCCTTTTCATAAATATGATGTCTAAATNAAATNAAATCATTAT
CATTNAAAATGTAACAACTCTTCTACTATCATCCTT
Length of connected seq. 1106
Full length Seq ID -
Full length Seq. -
Length of full length seq. -