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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB181
Library VF
(Link to library)
Clone ID VFB181
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10808-1|Contig-U12601-1
Original site URL
Representative seq. ID VFB181P
(Link to Original site)
Representative DNA sequence 
>VFB181 (VFB181Q) /CSM/VF/VFB1-D/VFB181Q.Seq.d/
GTATTAAATNCAAAATCTTTCTTTTAAGTGTACACTTATTATTATTTGTAGTTTTTATTA
ATNTCATTTTAAATAACCCCATATACCACACTTAAAAATACTCTTTGTAACACATCATTA
CTACAACTACCACTTTATTTAATATTTATAAAAAAAAAAXXXXXXXXXXTGGTGCTGTTG
TTGATTTTAACGTTTTAGAAGCAATGGATAAAAATAAAGTTGAATATATTATGGAAGTTA
CAAATAAAACTAGAGCAGATGTTAAAGGTGGTACATTAATTCAATATGAAGGTAAAGCTA
AATTATTGGAGATTGCACAAGTACCATCATCAAAGGTTGAAGAATTTAAATCAATAAAGA
AATTCAAAATTTTTAATACCAATAACATTTGGGTCAATCTCAAAGCAATGGATCGTATTT
TGAAACAAAATCTTTTGGATGATATGGATATCATTATCAATCCAAAGGTTGCTGATGGTA
AAAATATCATTCAATTGGAGATTGCTGCTGGTGCTGCAATTGAATTCTTTAACAATGCAA
GAGGTGTCAATGTACCAAGATCAAGATTTTTACCAGTGAAATCAACCTCTGATCTCTTTA
TCGTTCAATCAAATCTCTACTCACTCGAGAAGGGTGTTTTGGTAATGAACAAGAATAGAC
CATTCACCACAGTTCCCTTGG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
vlnxksff*vytyyyl*fllxsf*ITPYTTLKNTLCNTSLLQLPLYLIFIKKK---

---GAVVDFNVLEAMDKNKVEYIMEVTNKTRADVKGGTLIQYEGKAKLLEIAQVPSSKVE
EFKSIKKFKIFNTNNIWVNLKAMDRILKQNLLDDMDIIINPKVADGKNIIQLEIAAGAAI
EFFNNARGVNVPRSRFLPVKSTSDLFIVQSNLYSLEKGVLVMNKNRPFTTVPL
Translated Amino Acid sequence (All Frames) 
Frame A:
vlnxksff*vytyyyl*fllxsf*ITPYTTLKNTLCNTSLLQLPLYLIFIKKK---

---wccc*f*rfrsng*k*s*iyygsyk*n*src*rwyinsi*r*s*iigdctstiikg*
ri*inkeiqnf*yq*hlgqsqsngsyfetksfg*ygyhyqskgc*w*kyhsigdccwccn
*il*qckrcqctkikiftseinl*slyrsikslltregcfgneqe*tihhssl

Frame B:
y*xqnlsfkctliiicsfy*xhfk*phiphlkilfvthhyynyhfi*yl*kk---

---GAVVDFNVLEAMDKNKVEYIMEVTNKTRADVKGGTLIQYEGKAKLLEIAQVPSSKVE
EFKSIKKFKIFNTNNIWVNLKAMDRILKQNLLDDMDIIINPKVADGKNIIQLEIAAGAAI
EFFNNARGVNVPRSRFLPVKSTSDLFIVQSNLYSLEKGVLVMNKNRPFTTVPL

Frame C:
ikxkifllsvhlllfvvfinxilnnpiyht*kysl*hiitttttlfniykkk---

---vllliltf*kqwikiklnilwklqikleqmlkvvh*fnmkvklnywrlhkyhhqrlk
nlnq*rnskflipitfgsiskqwivf*nkifwmiwislsiqrllmvkisfnwrlllvlql
nsltmqevsmyqdqdfyq*nqplislsfnqisthsrrvfw**tridhspqfpw
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB181 (VFB181Q) /CSM/VF/VFB1-D/VFB181Q.Seq.d/                       1015   0.0
SSA730 (SSA730Q) /CSM/SS/SSA7-B/SSA730Q.Seq.d/                       1007   0.0
SFG824 (SFG824Q) /CSM/SF/SFG8-A/SFG824Q.Seq.d/                       1007   0.0
SFE708 (SFE708Q) /CSM/SF/SFE7-A/SFE708Q.Seq.d/                       1007   0.0
CFI712 (CFI712Q) /CSM/CF/CFI7-A/CFI712Q.Seq.d/                       1007   0.0
CFH141 (CFH141Q) /CSM/CF/CFH1-B/CFH141Q.Seq.d/                       1007   0.0
AFN895 (AFN895Q) /CSM/AF/AFN8-D/AFN895Q.Seq.d/                       1007   0.0
AFD217 (AFD217Q) /CSM/AF/AFD2-A/AFD217Q.Seq.d/                       1007   0.0
AFC591 (AFC591Q) /CSM/AF/AFC5-D/AFC591Q.Seq.d/                       1007   0.0
SFL171 (SFL171Q) /CSM/SF/SFL1-C/SFL171Q.Seq.d/                       1005   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF150929|AF150929.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase 2 (UDPGP2) mRNA, complete cds.  1007  0.0  1
L28007|L28007.1 Dictyostelium discoideum UDP-glucose pyrophosphorylase (UDPGP2) gene, partial cds.   254  1e-67  2
CD668886|CD668886.1 eef1c.pk001.c10 eef1c Eucalyptus tereticornis cDNA clone eef1c.pk001.c10 5' end, mRNA sequence.    50  1e-08  3
BM027066|BM027066.1 GIT0000336 Root-induced cDNA library from Glomus intraradices Glomus intraradices cDNA, mRNA sequence.    46  7e-05  3
BG318768|BG318768.1 NXPV_016_F06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda cDNA clone NXPV_016_F06 5', mRNA sequence.    36  1e-04  3
BD236000|BD236000.1 Materials and method for modification of plant cell wall polysaccharides.    36  5e-04  3
CD475848|CD475848.1 nad03-4ms1-g06 Nad03 Nuphar advena cDNA clone nad03-4ms1-g06 5', mRNA sequence.    50  6e-04  2
BD236031|BD236031.1 Materials and method for modification of plant cell wall polysaccharides.    36  0.002  3
AX489345|AX489345.1 Sequence 6645 from Patent WO02053728.         38  0.005  2
AF004368|AF004368.1 Cricetulus griseus UDP-glucose pyrophosphorylase mRNA, complete cds.    52  0.009  1
dna update 2003. 8.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54YZ0) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   283   4e-75
S35692(S35692)UTP-glucose-1-phosphate uridylyltransferase (EC 2....   171   2e-41
BC084711_1(BC084711|pid:none) Rattus norvegicus UDP-glucose pyro...   171   2e-41
BC026626_1(BC026626|pid:none) Mus musculus UDP-glucose pyrophosp...   170   3e-41
(Q91ZJ5) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   170   3e-41
AK153885_1(AK153885|pid:none) Mus musculus 2 days neonate thymus...   170   3e-41
(Q07130) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   169   5e-41
(P57751) RecName: Full=UTP--glucose-1-phosphate uridylyltransfer...   169   7e-41
EF677449_1(EF677449|pid:none) Picea sitchensis clone WS02769_A21...   169   9e-41
BT078600_1(BT078600|pid:none) Lepeophtheirus salmonis clone lsal...   168   1e-40
protein update 2009. 6.17
PSORT 

 psg: 0.93  gvh: 0.36  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 24.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for VFB181 is cyt
5' end seq. ID VFB181F
5' end seq. 
>VFB181F.Seq
GTATTAAATNCAAAATCTTTCTTTTAAGTGTACACTTATTATTATTTGTAGTTTTTATTA
ATNTCATTTTAAATAACCCCATATACCACACTTAAAAATACTCTTTGTAACACATCATTA
CTACAACTACCACTTTATTTAATATTTATAAAAAAAAAA----------
Length of 5' end seq. 159
3' end seq. ID VFB181Z
3' end seq. 
>VFB181Z.Seq
----------TGGTGCTGTTGTTGATTTTAACGTTTTAGAAGCAATGGATAAAAATAAAG
TTGAATATATTATGGAAGTTACAAATAAAACTAGAGCAGATGTTAAAGGTGGTACATTAA
TTCAATATGAAGGTAAAGCTAAATTATTGGAGATTGCACAAGTACCATCATCAAAGGTTG
AAGAATTTAAATCAATAAAGAAATTCAAAATTTTTAATACCAATAACATTTGGGTCAATC
TCAAAGCAATGGATCGTATTTTGAAACAAAATCTTTTGGATGATATGGATATCATTATCA
ATCCAAAGGTTGCTGATGGTAAAAATATCATTCAATTGGAGATTGCTGCTGGTGCTGCAA
TTGAATTCTTTAACAATGCAAGAGGTGTCAATGTACCAAGATCAAGATTTTTACCAGTGA
AATCAACCTCTGATCTCTTTATCGTTCAATCAAATCTCTACTCACTCGAGAAGGGTGTTT
TGGTAATGAACAAGAATAGACCATTCACCACAGTTCCCTTGG
Length of 3' end seq. 512
Connected seq. ID VFB181P
Connected seq. 
>VFB181P.Seq
GTATTAAATNCAAAATCTTTCTTTTAAGTGTACACTTATTATTATTTGTAGTTTTTATTA
ATNTCATTTTAAATAACCCCATATACCACACTTAAAAATACTCTTTGTAACACATCATTA
CTACAACTACCACTTTATTTAATATTTATAAAAAAAAAA----------TGGTGCTGTTG
TTGATTTTAACGTTTTAGAAGCAATGGATAAAAATAAAGTTGAATATATTATGGAAGTTA
CAAATAAAACTAGAGCAGATGTTAAAGGTGGTACATTAATTCAATATGAAGGTAAAGCTA
AATTATTGGAGATTGCACAAGTACCATCATCAAAGGTTGAAGAATTTAAATCAATAAAGA
AATTCAAAATTTTTAATACCAATAACATTTGGGTCAATCTCAAAGCAATGGATCGTATTT
TGAAACAAAATCTTTTGGATGATATGGATATCATTATCAATCCAAAGGTTGCTGATGGTA
AAAATATCATTCAATTGGAGATTGCTGCTGGTGCTGCAATTGAATTCTTTAACAATGCAA
GAGGTGTCAATGTACCAAGATCAAGATTTTTACCAGTGAAATCAACCTCTGATCTCTTTA
TCGTTCAATCAAATCTCTACTCACTCGAGAAGGGTGTTTTGGTAATGAACAAGAATAGAC
CATTCACCACAGTTCCCTTGG
Length of connected seq. 671
Full length Seq ID -
Full length Seq. -
Length of full length seq. -