VFB141
Library VF
(Link to library)
Clone ID VFB141
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13892-1
Original site URL
Representative seq. ID VFB141P
(Link to Original site)
Representative DNA sequence
>VFB141 (VFB141Q) /CSM/VF/VFB1-B/VFB141Q.Seq.d/
GTTTGTTNAATATAAATGAATAGAATTTTAAAACAAGTATCAAATACCAAAGGTAAAGGT
ATTAGATTCTATTCATCTTCTAGTCAATTGGATTCAGAATATATGTTTCCATCAGTCAGA
AGATTATTAGTAGAATATGGTATCAATAGTAGTAAGGAAGTAACAGCTACAGGTCCACAA
AATAGATTACTTAAAGGTGATGTTTTAGCATATATAAAAACAAAGAATTTATCACCAGTA
GATAGATTATCATTAATTGCATCATCAGTAAAATCATCACAACCATCATCATCATCATCA
CCATCAATAGTAGACTCACCAACATTAACATCACAAATTAAAGATCAAATTAAAATTGTA
ACAACAATTACAAATGATAAAAATAAATCAAAAGTTATATACGAAGATATACCAAATAAT
AATATTAGAAGAGTAATTGCAACTAAATTAAGTCAATCGAAACAACAAGTACCACATTTC
TATATGACAGTTGAATGTGAATTGGATAATGTTTTAGCAATGAGAAAATCTATGCCAGAG
XXXXXXXXXXTAAACGATTTCGTGTTAAGAGCATGTGCATTGGCATTACGTGATAATCCA
CAAGCAAATTCTAAATGGTCCGACGCACATGGTGAAGCCATATTAAATCCAACCGTTGAC
ATTTCATTTGCAGTTAGTACCGATCGTGGTTTAATCACACCAATCATCACATATACCGAT
AAGAAACAATTGTTGGCAATTTCAAACGAGTCTAAACAATTGGCATTGAAAGCAAGAGAT
GGTAAATTGAAACCAGAAGAATTCATTGGTGGTACATTTAGTGTATCAAATTTAGGTATG
TTTGGTATTACATCCTTTAATGCAATCATAAATTATCCACAAGCTGGTATCTTGGCAATT
GGTACTGGTAGAAAAGTTTTAAGACCACCTTCAACCTATCAACCAATAGAAACAAACTTA
AACGCATCATATGGCTCTGAAGGTAAATCCGAAATCATAAATACAAATGGTCCATTAACA
ACTGAACAATTAGAAAAATTATTTGATAATACTGTATCAAAAAAACAAGATATTAAACAA
CAAATCATTAATGAACAACCACAACCACCAAAATATGAACAACCAAAGGTTGCAAATGTT
ATGGATGTTACACTCTCTGGTNATAATAGAGTATTCGA
sequence update 2001. 6. 1
Translated Amino Acid sequence
vcxi*MNRILKQVSNTKGKGIRFYSSSSQLDSEYMFPSVRRLLVEYGINSSKEVTATGPQ
NRLLKGDVLAYIKTKNLSPVDRLSLIASSVKSSQPSSSSSPSIVDSPTLTSQIKDQIKIV
TTITNDKNKSKVIYEDIPNNNIRRVIATKLSQSKQQVPHFYMTVECELDNVLAMRKSMPE
---

---NDFVLRACALALRDNPQANSKWSDAHGEAILNPTVDISFAVSTDRGLITPIITYTDK
KQLLAISNESKQLALKARDGKLKPEEFIGGTFSVSNLGMFGITSFNAIINYPQAGILAIG
TGRKVLRPPSTYQPIETNLNASYGSEGKSEIINTNGPLTTEQLEKLFDNTVSKKQDIKQQ
IINEQPQPPKYEQPKVANVMDVTLSGXNRVF


Translated Amino Acid sequence (All Frames)
Frame A:
vcxi*MNRILKQVSNTKGKGIRFYSSSSQLDSEYMFPSVRRLLVEYGINSSKEVTATGPQ
NRLLKGDVLAYIKTKNLSPVDRLSLIASSVKSSQPSSSSSPSIVDSPTLTSQIKDQIKIV
TTITNDKNKSKVIYEDIPNNNIRRVIATKLSQSKQQVPHFYMTVECELDNVLAMRKSMPE
---

---*tisc*ehvhwhyviihkqilngpthmvkpy*iqpltfhlqlvpivv*shqsshipi
rnncwqfqtslnnwh*kqemvn*nqknslvvhlvyqi*vclvlhplmqs*iihklvswql
vlvekf*dhlqpinq*kqt*thhmalkvnpks*iqmvh*qlnn*knyliilyqknkilnn
kslmnnhnhqnmnnqrlqmlwmlhslviieys

Frame B:
fvxyk*ief*nkyqipkvkvldsihllvnwiqnicfhqsedy**nmvsivvrk*qlqvhk
idylkvmf*hi*kqriyhq*idyh*lhhq*nhhnhhhhhhhq**thqh*hhklkiklkl*
qqlqmikinqklytkiyqiiilee*lqln*vnrnnkyhisi*qlnvnwimf*q*enlcq-
--

---krfrvksmcigit**stskf*mvrrtw*shiksnr*hfics*yrswfnhtnhhiyr*
etivgnfkrv*tigieskrw*ietrrihwwyi*cikfryvwyyil*cnhklstswylgnw
yw*ksfkttfnlstnrnklkriiwl*r*irnhkykwsinn*tirkii**ycikktry*tt
nh**tttttki*ttkgckcygcytlwx**sir

Frame C:
lxnine*nfktsikyqr*ry*ilfif*sigfriyvsisqkiisriwyq***gsnsyrstk
*it*r*cfsiyknkefitsr*iiinciiskiittiiiiitinsrltninitn*rsn*ncn
nnyk**k*iksyirrytk**y*ksncn*iksiettsttflyds*m*ig*cfsnekiyar-
--

---NDFVLRACALALRDNPQANSKWSDAHGEAILNPTVDISFAVSTDRGLITPIITYTDK
KQLLAISNESKQLALKARDGKLKPEEFIGGTFSVSNLGMFGITSFNAIINYPQAGILAIG
TGRKVLRPPSTYQPIETNLNASYGSEGKSEIINTNGPLTTEQLEKLFDNTVSKKQDIKQQ
IINEQPQPPKYEQPKVANVMDVTLSGXNRVF

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB141 (VFB141Q) /CSM/VF/VFB1-B/VFB141Q.Seq.d/ 1622 0.0
VFK604 (VFK604Q) /CSM/VF/VFK6-A/VFK604Q.Seq.d/ 1181 0.0
VFD716 (VFD716Q) /CSM/VF/VFD7-A/VFD716Q.Seq.d/ 1181 0.0
VFA484 (VFA484Q) /CSM/VF/VFA4-D/VFA484Q.Seq.d/ 1181 0.0
AFE605 (AFE605Q) /CSM/AF/AFE6-A/AFE605Q.Seq.d/ 1181 0.0
AFC534 (AFC534Q) /CSM/AF/AFC5-B/AFC534Q.Seq.d/ 1181 0.0
VFC635 (VFC635Q) /CSM/VF/VFC6-B/VFC635Q.Seq.d/ 1179 0.0
AFO171 (AFO171Q) /CSM/AF/AFO1-C/AFO171Q.Seq.d/ 1174 0.0
AFK875 (AFK875Q) /CSM/AF/AFK8-D/AFK875Q.Seq.d/ 1174 0.0
VHN213 (VHN213Q) /CSM/VH/VHN2-A/VHN213Q.Seq.d/ 1172 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 991 0.0 4
AE014094|AE014094.1 Buchnera aphidicola str. Sg (Schizaphis graminum) section 19 of 57 of the complete genome. 42 0.48 2
AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 36 0.58 9
AC021853|AC021853.3 Homo sapiens chromosome 11 clone RP11-496C3, WORKING DRAFT SEQUENCE, 17 unordered pieces. 36 0.78 4
CB839842|CB839842.1 Ac164 rat regenerating liver after partial hepatectomy Rattus norvegicus cDNA, mRNA sequence. 36 0.80 2
CB839821|CB839821.1 Ac126 rat regenerating liver after partial hepatectomy Rattus norvegicus cDNA, mRNA sequence. 36 0.80 2
AC013645|AC013645.3 Homo sapiens clone RP11-17H6, WORKING DRAFT SEQUENCE, 11 unordered pieces. 38 0.93 5
AC144505|AC144505.7 Pan troglodytes clone rp43-17i16, WORKING DRAFT SEQUENCE, 11 unordered pieces. 46 1.0 1
AC046142|AC046142.28 Homo sapiens 3 BAC RP11-550P14 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 46 1.0 1
AC113158|AC113158.2 Mus musculus chromosome UNK clone RP23-101D11, WORKING DRAFT SEQUENCE, 63 unordered pieces. 46 1.0 1
dna update 2003. 8.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

EF677914_1(EF677914|pid:none) Picea sitchensis clone WS0278_F17 ... 196 1e-48
AK228742_1(AK228742|pid:none) Arabidopsis thaliana mRNA for dihy... 192 1e-47
(Q0WQF7) RecName: Full=Dihydrolipoyllysine-residue acetyltransfe... 192 1e-47
A55939(A55939) dihydrolipoamide S-acetyltransferase (EC 2.3.1.12... 190 7e-47
AK072554_1(AK072554|pid:none) Oryza sativa Japonica Group cDNA c... 187 5e-46
CU459003_1536(CU459003|pid:none) Magnetospirillum gryphiswaldens... 181 3e-44
CP001329_545(CP001329|pid:none) Micromonas sp. RCC299 chromosome... 179 2e-43
AP007255_2318(AP007255|pid:none) Magnetospirillum magneticum AMB... 179 2e-43
AY596299_1(AY596299|pid:none) Chlamydomonas reinhardtii dihydrol... 176 2e-42
(P36413) RecName: Full=Dihydrolipoyllysine-residue acetyltransfe... 176 2e-42
protein update 2009. 6.17
PSORT

psg: 0.54 gvh: 0.38 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.47 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: mitochondrial
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: nuclear

>> prediction for VFB141 is mit

5' end seq. ID VFB141F
5' end seq.
>VFB141F.Seq
GTTTGTTNAATATAAATGAATAGAATTTTAAAACAAGTATCAAATACCAAAGGTAAAGGT
ATTAGATTCTATTCATCTTCTAGTCAATTGGATTCAGAATATATGTTTCCATCAGTCAGA
AGATTATTAGTAGAATATGGTATCAATAGTAGTAAGGAAGTAACAGCTACAGGTCCACAA
AATAGATTACTTAAAGGTGATGTTTTAGCATATATAAAAACAAAGAATTTATCACCAGTA
GATAGATTATCATTAATTGCATCATCAGTAAAATCATCACAACCATCATCATCATCATCA
CCATCAATAGTAGACTCACCAACATTAACATCACAAATTAAAGATCAAATTAAAATTGTA
ACAACAATTACAAATGATAAAAATAAATCAAAAGTTATATACGAAGATATACCAAATAAT
AATATTAGAAGAGTAATTGCAACTAAATTAAGTCAATCGAAACAACAAGTACCACATTTC
TATATGACAGTTGAATGTGAATTGGATAATGTTTTAGCAATGAGAAAATCTATGCCAGAG
----------
Length of 5' end seq. 540
3' end seq. ID VFB141Z
3' end seq.
>VFB141Z.Seq
----------TAAACGATTTCGTGTTAAGAGCATGTGCATTGGCATTACGTGATAATCCA
CAAGCAAATTCTAAATGGTCCGACGCACATGGTGAAGCCATATTAAATCCAACCGTTGAC
ATTTCATTTGCAGTTAGTACCGATCGTGGTTTAATCACACCAATCATCACATATACCGAT
AAGAAACAATTGTTGGCAATTTCAAACGAGTCTAAACAATTGGCATTGAAAGCAAGAGAT
GGTAAATTGAAACCAGAAGAATTCATTGGTGGTACATTTAGTGTATCAAATTTAGGTATG
TTTGGTATTACATCCTTTAATGCAATCATAAATTATCCACAAGCTGGTATCTTGGCAATT
GGTACTGGTAGAAAAGTTTTAAGACCACCTTCAACCTATCAACCAATAGAAACAAACTTA
AACGCATCATATGGCTCTGAAGGTAAATCCGAAATCATAAATACAAATGGTCCATTAACA
ACTGAACAATTAGAAAAATTATTTGATAATACTGTATCAAAAAAACAAGATATTAAACAA
CAAATCATTAATGAACAACCACAACCACCAAAATATGAACAACCAAAGGTTGCAAATGTT
ATGGATGTTACACTCTCTGGTNATAATAGAGTATTCGA
Length of 3' end seq. 628
Connected seq. ID VFB141P
Connected seq.
>VFB141P.Seq
GTTTGTTNAATATAAATGAATAGAATTTTAAAACAAGTATCAAATACCAAAGGTAAAGGT
ATTAGATTCTATTCATCTTCTAGTCAATTGGATTCAGAATATATGTTTCCATCAGTCAGA
AGATTATTAGTAGAATATGGTATCAATAGTAGTAAGGAAGTAACAGCTACAGGTCCACAA
AATAGATTACTTAAAGGTGATGTTTTAGCATATATAAAAACAAAGAATTTATCACCAGTA
GATAGATTATCATTAATTGCATCATCAGTAAAATCATCACAACCATCATCATCATCATCA
CCATCAATAGTAGACTCACCAACATTAACATCACAAATTAAAGATCAAATTAAAATTGTA
ACAACAATTACAAATGATAAAAATAAATCAAAAGTTATATACGAAGATATACCAAATAAT
AATATTAGAAGAGTAATTGCAACTAAATTAAGTCAATCGAAACAACAAGTACCACATTTC
TATATGACAGTTGAATGTGAATTGGATAATGTTTTAGCAATGAGAAAATCTATGCCAGAG
----------TAAACGATTTCGTGTTAAGAGCATGTGCATTGGCATTACGTGATAATCCA
CAAGCAAATTCTAAATGGTCCGACGCACATGGTGAAGCCATATTAAATCCAACCGTTGAC
ATTTCATTTGCAGTTAGTACCGATCGTGGTTTAATCACACCAATCATCACATATACCGAT
AAGAAACAATTGTTGGCAATTTCAAACGAGTCTAAACAATTGGCATTGAAAGCAAGAGAT
GGTAAATTGAAACCAGAAGAATTCATTGGTGGTACATTTAGTGTATCAAATTTAGGTATG
TTTGGTATTACATCCTTTAATGCAATCATAAATTATCCACAAGCTGGTATCTTGGCAATT
GGTACTGGTAGAAAAGTTTTAAGACCACCTTCAACCTATCAACCAATAGAAACAAACTTA
AACGCATCATATGGCTCTGAAGGTAAATCCGAAATCATAAATACAAATGGTCCATTAACA
ACTGAACAATTAGAAAAATTATTTGATAATACTGTATCAAAAAAACAAGATATTAAACAA
CAAATCATTAATGAACAACCACAACCACCAAAATATGAACAACCAAAGGTTGCAAATGTT
ATGGATGTTACACTCTCTGGTNATAATAGAGTATTCGA
Length of connected seq. 1168
Full length Seq ID -
Full length Seq. -
Length of full length seq. -