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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFB139
Library VF
(Link to library)
Clone ID VFB139
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13591-1
Original site URL
Representative seq. ID VFB139P
(Link to Original site)
Representative DNA sequence 
>VFB139 (VFB139Q) /CSM/VF/VFB1-B/VFB139Q.Seq.d/
ATTGTGATATTCAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAATC
ATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAAA
TGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAACA
TGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAATG
TATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAATACTGC
TAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATGC
ATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTACTGAAGC
TGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACCAACTCG
TCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAAAGTAGT
TACCAGTAGAGATTGGTCATTTGATGAAGCATCAATGGAAACTGTTTATCCAACTGCTTT
TGAACATGAAAGTCAACGTGAACAATTTGGTACTACATTTGCTCAXXXXXXXXXXATTTG
GAATATTTCTGATAATGCCAATTTCGATTCCATAAAGTCCTTCCAGTCCCAGGTGTTTTC
TCATTAGCTGCTAAAATCAATTTGAAAGAGAACCAAGAGAAATTCGATACCGCTTTTGAA
AGAATTAAAGAGGTCACTAAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGT
TTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTAT
TAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTT
CCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTA
TTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGT
TAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTT
AGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGAT
TAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCC
AAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTA
CATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGT
TGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAGAAACAAAGTTCTTATTG
GGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAG
NAAAGCAAATTTCAATTTNAAGCTCTCCTTAAAATAANAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
l*ysni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVDEH
VKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWKYA
FNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIKVV
TSRDWSFDEASMETVYPTAFEHESQREQFGTTFA---

---IWNISDNANFDSIKSFQSQVFSH*llksi*krtkrnsipllkelkrslkvdwsydeq
sletvypaleernkerigdlfqeiikyvadnivkrckedmvlesfleatsnakivfrhna
kangywnwsfenndlvitfksicnvsdnanfdfikilpspgvltlasrinlrenqekine
sfekikevlgndwtydessieqvypkleennkprvgdvfaeiiryisqnivkrckdddmv
kegfveatqnckivfqfvekqssywvwkfdggnlvvsfksicntxkanfnxklslk*xk
Translated Amino Acid sequence (All Frames) 
Frame A:
ivifkhiif*nafkpcc*kiikr**rtlk*st*rnqkcfkw*rmdy*i*lgchfr*s**t
c*ktir*sil*kfmsky**myckcikr*in*rinh*ckyc*kdcinc**rcqefillevc
i*wwsiksfiqerl**yy*sw*frii*sdsk*rcl*ftnss*yekesrki*tcirkn*ss
yq*rlvi**singnclsncf*t*kst*tiwyyics---

---IWNISDNANFDSIKSFQSQVFSH*llksi*krtkrnsipllkelkrslkvdwsydeq
sletvypaleernkerigdlfqeiikyvadnivkrckedmvlesfleatsnakivfrhna
kangywnwsfenndlvitfksicnvsdnanfdfikilpspgvltlasrinlrenqekine
sfekikevlgndwtydessieqvypkleennkprvgdvfaeiiryisqnivkrckdddmv
kegfveatqnckivfqfvekqssywvwkfdggnlvvsfksicntxkanfnxklslk*xk

Frame B:
l*ysni*FFKMPLNLVARKSLRDNEEHLNKAHEEIKNALNGEEWIIEFDWDAIFDKVDEH
VKKQLGEVFYKNLCPNISKCIVNASKDELTKESIINANTAKKIVLIVNEDAKNSSYWKYA
FNGGQLNLLFKKGCNNITEAGNFELYKVIPSEGAYSLPTRLNMKKNQERFELAFERIKVV
TSRDWSFDEASMETVYPTAFEHESQREQFGTTFA---

---fgiflimpisip*spssprcflisc*nqferepreiryrf*kn*rgh*k*igpmmsn
hwklfiqhlkkeikkelvtyskrllnmsliislnvvkriwf*kvsskqlqmqrlfsvtmp
kqtvigigvlktmi**spsnqfamlvimqtlislkfyhhqvysl*plesi*erikrksmn
lskrlkkswvmiglmmnlqsnkfiqn*kkiinhvlvmsllksfvtsvkislkdvkmmiws
kkvslkqlkivksssnllrnkvligfgnsmvvi*syhsnqfvilxkqisixssp*nxkk

Frame C:
cdiqtynflkcl*tlllenh*eimknt*ikhmkkskml*mvkngllnligmpfsiklmnm
lknn*vkyfikiyvqilvnvl*mhqkmn*lknqslmqillkrly*llmkmprihpigsmh
lmvvn*ifysrkvviillklvisnyik*fqvkvlivyqlvli*krikkdlnlhskelk*l
pveighlmkhqwklfiqlllnmkvnvnnlvlhll---

---leyf**cqfrfhkvlpvpgvfslaakinlkenqekfdtaferikevtksrlvl**ai
ignclsst*rkk*rknw*liprdy*icr**yr*tl*rgygfrkfprsnfkckdcfpsqcq
skrllelef*kq*fsnhlqinlqc***ckl*fh*nftitrcthfsl*nqferesrenq*i
frkd*rslg**ldl**ifnrtslskirrk**ttcw*clc*nhslhqskyr*km*r**ygq
rrfr*snskl*nrlpic*etkfllgleirww*fsriiqinl*y*xskfqfxallkixkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFB139 (VFB139Q) /CSM/VF/VFB1-B/VFB139Q.Seq.d/                       2976   0.0
VHP414 (VHP414Q) /CSM/VH/VHP4-A/VHP414Q.Seq.d/                       1635   0.0
VFH860 (VFH860Q) /CSM/VF/VFH8-C/VFH860Q.Seq.d/                       1620   0.0
VHJ560 (VHJ560Q) /CSM/VH/VHJ5-C/VHJ560Q.Seq.d/                       1602   0.0
VHC827 (VHC827Q) /CSM/VH/VHC8-B/VHC827Q.Seq.d/                       1600   0.0
VHA662 (VHA662Q) /CSM/VH/VHA6-C/VHA662Q.Seq.d/                       1600   0.0
VHJ523 (VHJ523Q) /CSM/VH/VHJ5-A/VHJ523Q.Seq.d/                       1598   0.0
VHP470 (VHP470Q) /CSM/VH/VHP4-C/VHP470Q.Seq.d/                       1596   0.0
VHC489 (VHC489Q) /CSM/VH/VHC4-D/VHC489Q.Seq.d/                       1596   0.0
VHJ572 (VHJ572Q) /CSM/VH/VHJ5-C/VHJ572Q.Seq.d/                       1590   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116978|AC116978.1 Dictyostelium discoideum chromosome 2 map 4846697-4874480 strain AX4, *** SEQUENCING IN PROGRESS ***.    56  7e-14  6
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    56  8e-11  10
AE014817|AE014817.1 Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete sequence.    36  0.004  11
AB010700|AB010700.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21.    54  0.005  1
CC793440|CC793440.1 SALK_014338.54.25.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_014338.54.25.x, genomic survey sequence.    54  0.005  1
AC098590|AC098590.3 Homo sapiens BAC clone RP11-324J13 from 4, complete sequence.    42  0.009  5
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    34  0.019  9
Z54142|Z54142.2 S.pombe chromosome I cosmid c24H6.                38  0.057  4
AC094447|AC094447.6 Rattus norvegicus clone CH230-4F10, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  0.058  2
AC115155|AC115155.5 Rattus norvegicus clone CH230-275P1, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    46  0.085  7
dna update 2003. 8.27
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117081_29(AC117081|pid:none) Dictyostelium discoideum chromoso...   156   2e-36
AC117081_21(AC117081|pid:none) Dictyostelium discoideum chromoso...   156   2e-36
AL844502_159(AL844502|pid:none) Plasmodium falciparum 3D7 chromo...    44   0.012
AM412317_1537(AM412317|pid:none) Clostridium botulinum A str. AT...    39   0.67
AM180355_1608(AM180355|pid:none) Clostridium difficile 630 compl...    38   1.1
CP001581_3540(CP001581|pid:none) Clostridium botulinum A2 str. K...    37   1.5
AF206632_1(AF206632|pid:none) Plasmodium falciparum isolate FCC1...    37   1.9
AF063866_241(AF063866|pid:none) Melanoplus sanguinipes entomopox...    37   1.9
CP000383_328(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340...    37   1.9
CP000939_1561(CP000939|pid:none) Clostridium botulinum B1 str. O...    36   3.3
protein update 2009. 6.17
PSORT 

 psg: 0.26  gvh: 0.20  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for VFB139 is nuc
5' end seq. ID VFB139F
5' end seq. 
>VFB139F.Seq
ATTGTGATATTCAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAATC
ATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAAA
TGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAACA
TGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAATG
TATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAATACTGC
TAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATGC
ATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTACTGAAGC
TGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACCAACTCG
TCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAAAGTAGT
TACCAGTAGAGATTGGTCATTTGATGAAGCATCAATGGAAACTGTTTATCCAACTGCTTT
TGAACATGAAAGTCAACGTGAACAATTTGGTACTACATTTGCTCA----------
Length of 5' end seq. 645
3' end seq. ID VFB139Z
3' end seq. 
>VFB139Z.Seq
----------ATTTGGAATATTTCTGATAATGCCAATTTCGATTCCATAAAGTCCTTCCA
GTCCCAGGTGTTTTCTCATTAGCTGCTAAAATCAATTTGAAAGAGAACCAAGAGAAATTC
GATACCGCTTTTGAAAGAATTAAAGAGGTCACTAAAAGTAGATTGGTCCTATGATGAGCA
ATCATTGGAAACTGTTTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTT
ATTCCAAGAGATTATTAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATAT
GGTTTTAGAAAGTTTCCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGC
CAAAGCAAACGGTTATTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAA
ATCAATTTGCAATGTTAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACC
AGGTGTACTCACTTTAGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGA
ATCTTTCGAAAAGATTAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAAT
CGAACAAGTTTATCCAAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGC
TGAAATCATTCGTTACATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGT
CAAAGAAGGTTTCGTTGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAGAA
ACAAAGTTCTTATTGGGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATC
AATTTGTAATACTAGNAAAGCAAATTTCAATTTNAAGCTCTCCTTAAAATAANAAAAAAA
Length of 3' end seq. 890
Connected seq. ID VFB139P
Connected seq. 
>VFB139P.Seq
ATTGTGATATTCAAACATATAATTTTTTAAAATGCCTTTAAACCTTGTTGCTAGAAAATC
ATTAAGAGATAATGAAGAACACTTAAATAAAGCACATGAAGAAATCAAAAATGCTTTAAA
TGGTGAAGAATGGATTATTGAATTTGATTGGGATGCCATTTTCGATAAAGTTGATGAACA
TGTTAAAAAACAATTAGGTGAAGTATTTTATAAAAATTTATGTCCAAATATTAGTAAATG
TATTGTAAATGCATCAAAAGATGAATTAACTAAAGAATCAATCATTAATGCAAATACTGC
TAAAAAGATTGTATTAATTGTTAATGAAGATGCCAAGAATTCATCCTATTGGAAGTATGC
ATTTAATGGTGGTCAATTAAATCTTTTATTCAAGAAAGGTTGTAATAATATTACTGAAGC
TGGTAATTTCGAATTATATAAAGTGATTCCAAGTGAAGGTGCTTATAGTTTACCAACTCG
TCTTAATATGAAAAAGAATCAAGAAAGATTTGAACTTGCATTCGAAAGAATTAAAGTAGT
TACCAGTAGAGATTGGTCATTTGATGAAGCATCAATGGAAACTGTTTATCCAACTGCTTT
TGAACATGAAAGTCAACGTGAACAATTTGGTACTACATTTGCTCA----------ATTTG
GAATATTTCTGATAATGCCAATTTCGATTCCATAAAGTCCTTCCAGTCCCAGGTGTTTTC
TCATTAGCTGCTAAAATCAATTTGAAAGAGAACCAAGAGAAATTCGATACCGCTTTTGAA
AGAATTAAAGAGGTCACTAAAAGTAGATTGGTCCTATGATGAGCAATCATTGGAAACTGT
TTATCCAGCACTTGAAGAAAGAAATAAAGAAAGAATTGGTGACTTATTCCAAGAGATTAT
TAAATATGTCGCTGATAATATCGTTAAACGTTGTAAAGAGGATATGGTTTTAGAAAGTTT
CCTCGAAGCAACTTCAAATGCAAAGATTGTTTTCCGTCACAATGCCAAAGCAAACGGTTA
TTGGAATTGGAGTTTTGAAAACAATGATTTAGTAATCACCTTCAAATCAATTTGCAATGT
TAGTGATAATGCAAACTTTGATTTCATTAAAATTTTACCATCACCAGGTGTACTCACTTT
AGCCTCTAGAATCAATTTGAGAGAGAATCAAGAGAAAATCAATGAATCTTTCGAAAAGAT
TAAAGAAGTCTTGGGTAATGATTGGACTTATGATGAATCTTCAATCGAACAAGTTTATCC
AAAATTAGAAGAAAATAATAAACCACGTGTTGGTGATGTCTTTGCTGAAATCATTCGTTA
CATCAGTCAAAATATCGTTAAAAGATGTAAAGATGATGATATGGTCAAAGAAGGTTTCGT
TGAAGCAACTCAAAATTGTAAAATCGTCTTCCAATTTGTTGAGAAACAAAGTTCTTATTG
GGTTTGGAAATTCGATGGTGGTAATTTAGTCGTATCATTCAAATCAATTTGTAATACTAG
NAAAGCAAATTTCAATTTNAAGCTCTCCTTAAAATAANAAAAAAA
Length of connected seq. 1535
Full length Seq ID -
Full length Seq. -
Length of full length seq. -