VFB136
Library VF
(Link to library)
Clone ID VFB136
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15154-1
Original site URL
Representative seq. ID VFB136P
(Link to Original site)
Representative DNA sequence
>VFB136 (VFB136Q) /CSM/VF/VFB1-B/VFB136Q.Seq.d/
ATTGTTTTATCGACCCCTTTAACACACTCACTCACTAAAATGTNAAACATTAAAATTCTT
TGCGCTGGTAACCCATTACTCGACCTTTCAACACATGTCGAAATGGCCATCTTAGATAAA
TATGAATTAAAGCTTGGTAATGCTATCTTAGCTGAAGACAAACATTTACCACTTTATGGT
GAAATTAAAAGTGGTAAAGTTGAATATATTCCAGGTGGTGCTGCACAAAATACATCACGT
GTTTGTCAACGGATGTTAAAAGATAAACAAACCGTTTGTTACACTGGTTGTGTTGGTACT
GATGAAAATGCCACCATTTTAAAGACTGCCACCGAATCCAATGGTGTTGTCACTAAATAC
CAAGTTGACAGCTCAGCTCCAACTGGTGCATGTGCAGTTTTAATTAACCACAAAGAAAGA
TCAATGGTTACCAATTTAGGTGCTGCCAACAATTTCAAAATCGCTCACTTCCAAACTGAA
GAAATGAAAGCAATTGTCAACTCTGCTCAATTCTTTTATTTAGXXXXXXXXXXGGTTACT
TTTTANCCGTTTCACCAGACTCTGCTGTTCACTTGGGTAAACACGCCGCTGAAAATGATA
AACCATTCCTCTACGGTTTAGCCGCTCCATTCTTAATTGATTTCTTCTTTGATAAAGTTT
CTGAACTCCTCCCATACGTTGATATCGTTTTTGCCAATGAAAGTGAAGCCGCCACTCTTG
GTCGTAAAATGAACTGGGGTGAAGATTTAACCGTCATCGCTGAAAAATTAGCCGCTTGGG
AAAAAGTTAACACCAAACGTACTCGTACCGTCGTTTTCACCCAAGGTCCAGATGCCACTC
TTGTCTTCCAAAATGGTGTTTTAACAAAATACAACCCAATCAAAGTTGCCACTGAAGATA
TCCTCGATTTAAACGCTGCCGGTGATTCATTCTGTGGTGGTTTCCTTGCCGCTTACTCCA
ATGGTCAAGAAATCGCCAAATGTGTCGAAGCTGGTCACTATGCCTCTTGGGAAATATAGA
CAAAATGGTGCCACCGTCCCAGCCAGNAACCAAAAATCCAATTC
sequence update 2001. 6. 1
Translated Amino Acid sequence
IVLSTPLTHSLTKMXNIKILCAGNPLLDLSTHVEMAILDKYELKLGNAILAEDKHLPLYG
EIKSGKVEYIPGGAAQNTSRVCQRMLKDKQTVCYTGCVGTDENATILKTATESNGVVTKY
QVDSSAPTGACAVLINHKERSMVTNLGAANNFKIAHFQTEEMKAIVNSAQFFYL---

---GYFLXVSPDSAVHLGKHAAENDKPFLYGLAAPFLIDFFFDKVSELLPYVDIVFANES
EAATLGRKMNWGEDLTVIAEKLAAWEKVNTKRTRTVVFTQGPDATLVFQNGVLTKYNPIK
VATEDILDLNAAGDSFCGGFLAAYSNGQEIAKCVEAGHYASWEI*tkwchrpsqxpkiqf


Translated Amino Acid sequence (All Frames)
Frame A:
IVLSTPLTHSLTKMXNIKILCAGNPLLDLSTHVEMAILDKYELKLGNAILAEDKHLPLYG
EIKSGKVEYIPGGAAQNTSRVCQRMLKDKQTVCYTGCVGTDENATILKTATESNGVVTKY
QVDSSAPTGACAVLINHKERSMVTNLGAANNFKIAHFQTEEMKAIVNSAQFFYL---

---GYFLXVSPDSAVHLGKHAAENDKPFLYGLAAPFLIDFFFDKVSELLPYVDIVFANES
EAATLGRKMNWGEDLTVIAEKLAAWEKVNTKRTRTVVFTQGPDATLVFQNGVLTKYNPIK
VATEDILDLNAAGDSFCGGFLAAYSNGQEIAKCVEAGHYASWEI*tkwchrpsqxpkiqf

Frame B:
lfyrpl*hthslkcxtlkffalvthystfqhmskwps*inmn*slvmls*lktniyhfmv
klkvvklnifqvvlhkihhvfvngc*kinkpfvtlvvlvlmkmppf*rlppnpmvlslnt
kltaqlqlvhvqf*lttkkdqwlpi*vlptisksltsklkk*kqlstllnsfi*---

---vtfxpfhqtllftwvntplkminhsstv*plhs*lisslikflnsshtlisflpmkv
kppllvvk*tgvki*psslkn*plgkkltpnvlvpsfspkvqmpllsskmvf*qnttqsk
lplkissi*tlpvihsvvvslpltpmvkkspnvsklvtmplgkyrqngatvpaxnqksn

Frame C:
cfidpfntlth*nvkh*nslrw*pitrpfntcrnghlr*i*ikaw*cyls*rqtfttlw*
n*kw*s*iysrwcctkyitclstdvkr*tnrllhwlcwy**kchhfkdchriqwcch*ip
s*qlssnwcmcsfn*pqrkingyqfrccqqfqnrslpn*rnesncqlcsillf---

---llfxrftrlccslg*trr*k**tiplrfsrsiln*fll**sf*tppir*yrfcq*k*
srhsws*nelg*rfnrhr*kisrlgks*hqtysyrrfhprsrchsclpkwcfnkiqpnqs
ch*ryprfkrcr*filwwfpcrllqwsrnrqmcrswslcllgnidkmvppsqpxtknpi

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFB136 (VFB136Q) /CSM/VF/VFB1-B/VFB136Q.Seq.d/ 2032 0.0
VFA656 (VFA656Q) /CSM/VF/VFA6-C/VFA656Q.Seq.d/ 1970 0.0
VFO606 (VFO606Q) /CSM/VF/VFO6-A/VFO606Q.Seq.d/ 1968 0.0
VFN258 (VFN258Q) /CSM/VF/VFN2-C/VFN258Q.Seq.d/ 1966 0.0
VFK886 (VFK886Q) /CSM/VF/VFK8-D/VFK886Q.Seq.d/ 1966 0.0
VFK730 (VFK730Q) /CSM/VF/VFK7-B/VFK730Q.Seq.d/ 1966 0.0
VFD787 (VFD787Q) /CSM/VF/VFD7-D/VFD787Q.Seq.d/ 1966 0.0
VFB669 (VFB669Q) /CSM/VF/VFB6-C/VFB669Q.Seq.d/ 1966 0.0
VFB633 (VFB633Q) /CSM/VF/VFB6-B/VFB633Q.Seq.d/ 1966 0.0
VFH755 (VFH755Q) /CSM/VF/VFH7-C/VFH755Q.Seq.d/ 1953 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BP187715|BP187715.1 Dugesia japonica cDNA, clone: 00174_HH, expressed in the head. 48 0.23 1
BH797835|BH797835.1 1008095G03.x1 1008 - RescueMu Grid I Zea mays genomic, DNA sequence. 46 0.90 1
AQ372415|AQ372415.1 RPCI11-143N1.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-143N1, genomic survey sequence. 34 1.4 2
AC136449|AC136449.9 Medicago truncatula clone mth2-11k13, WORKING DRAFT SEQUENCE, 7 unordered pieces. 44 3.6 1
BF298553|BF298553.1 018PbF03 Pb cDNA #20, Charles Yowell and Jane Carlton Plasmodium berghei cDNA 5', mRNA sequence. 44 3.6 1
BG573750|BG573750.1 602594833F1 NIH_MGC_79 Homo sapiens cDNA clone IMAGE:4721961 5', mRNA sequence. 44 3.6 1
AC096295|AC096295.7 Rattus norvegicus clone CH230-37D6, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces. 46 5.0 2
AP000560|AP000560.4 Homo sapiens genomic DNA, chromosome 11q clone:CMB9-8M21. 42 7.3 3
AL928700|AL928700.7 Mouse DNA sequence from clone RP23-388J20 on chromosome 2. 44 12 3
AC041034|AC041034.2 Homo sapiens chromosome 3 clone RP11-634L24 map 3, WORKING DRAFT SEQUENCE, 21 unordered pieces. 42 14 1
dna update 2003. 8.27
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(O49923) RecName: Full=Adenosine kinase; Short=AK; ... 147 2e-71
CR954210_348(CR954210|pid:none) Ostreococcus tauri strain OTTH05... 149 1e-70
BT035866_1(BT035866|pid:none) Zea mays full-length cDNA clone ZM... 145 8e-64
CR382134_308(CR382134|pid:none) Debaryomyces hansenii strain CBS... 140 2e-63
CP000497_246(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 134 2e-63
BT043709_1(BT043709|pid:none) Salmo salar clone HM5_2665 adenosi... 147 3e-63
AY224510_1(AY224510|pid:none) Oryza sativa (japonica cultivar-gr... 148 5e-63
AK059771_1(AK059771|pid:none) Oryza sativa Japonica Group cDNA c... 148 5e-63
DQ440446_1(DQ440446|pid:none) Aedes aegypti clone AET-5960 adeno... 135 2e-62
EF144718_1(EF144718|pid:none) Populus trichocarpa clone WS01117_... 139 2e-62
protein update 2009. 6.17
PSORT

psg: 0.90 gvh: 0.42 alm: 0.40 top: 0.63 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for VFB136 is cyt

5' end seq. ID VFB136F
5' end seq.
>VFB136F.Seq
ATTGTTTTATCGACCCCTTTAACACACTCACTCACTAAAATGTNAAACATTAAAATTCTT
TGCGCTGGTAACCCATTACTCGACCTTTCAACACATGTCGAAATGGCCATCTTAGATAAA
TATGAATTAAAGCTTGGTAATGCTATCTTAGCTGAAGACAAACATTTACCACTTTATGGT
GAAATTAAAAGTGGTAAAGTTGAATATATTCCAGGTGGTGCTGCACAAAATACATCACGT
GTTTGTCAACGGATGTTAAAAGATAAACAAACCGTTTGTTACACTGGTTGTGTTGGTACT
GATGAAAATGCCACCATTTTAAAGACTGCCACCGAATCCAATGGTGTTGTCACTAAATAC
CAAGTTGACAGCTCAGCTCCAACTGGTGCATGTGCAGTTTTAATTAACCACAAAGAAAGA
TCAATGGTTACCAATTTAGGTGCTGCCAACAATTTCAAAATCGCTCACTTCCAAACTGAA
GAAATGAAAGCAATTGTCAACTCTGCTCAATTCTTTTATTTAG----------
Length of 5' end seq. 523
3' end seq. ID VFB136Z
3' end seq.
>VFB136Z.Seq
----------GGTTACTTTTTANCCGTTTCACCAGACTCTGCTGTTCACTTGGGTAAACA
CGCCGCTGAAAATGATAAACCATTCCTCTACGGTTTAGCCGCTCCATTCTTAATTGATTT
CTTCTTTGATAAAGTTTCTGAACTCCTCCCATACGTTGATATCGTTTTTGCCAATGAAAG
TGAAGCCGCCACTCTTGGTCGTAAAATGAACTGGGGTGAAGATTTAACCGTCATCGCTGA
AAAATTAGCCGCTTGGGAAAAAGTTAACACCAAACGTACTCGTACCGTCGTTTTCACCCA
AGGTCCAGATGCCACTCTTGTCTTCCAAAATGGTGTTTTAACAAAATACAACCCAATCAA
AGTTGCCACTGAAGATATCCTCGATTTAAACGCTGCCGGTGATTCATTCTGTGGTGGTTT
CCTTGCCGCTTACTCCAATGGTCAAGAAATCGCCAAATGTGTCGAAGCTGGTCACTATGC
CTCTTGGGAAATATAGACAAAATGGTGCCACCGTCCCAGCCAGNAACCAAAAATCCAATT
C
Length of 3' end seq. 531
Connected seq. ID VFB136P
Connected seq.
>VFB136P.Seq
ATTGTTTTATCGACCCCTTTAACACACTCACTCACTAAAATGTNAAACATTAAAATTCTT
TGCGCTGGTAACCCATTACTCGACCTTTCAACACATGTCGAAATGGCCATCTTAGATAAA
TATGAATTAAAGCTTGGTAATGCTATCTTAGCTGAAGACAAACATTTACCACTTTATGGT
GAAATTAAAAGTGGTAAAGTTGAATATATTCCAGGTGGTGCTGCACAAAATACATCACGT
GTTTGTCAACGGATGTTAAAAGATAAACAAACCGTTTGTTACACTGGTTGTGTTGGTACT
GATGAAAATGCCACCATTTTAAAGACTGCCACCGAATCCAATGGTGTTGTCACTAAATAC
CAAGTTGACAGCTCAGCTCCAACTGGTGCATGTGCAGTTTTAATTAACCACAAAGAAAGA
TCAATGGTTACCAATTTAGGTGCTGCCAACAATTTCAAAATCGCTCACTTCCAAACTGAA
GAAATGAAAGCAATTGTCAACTCTGCTCAATTCTTTTATTTAG----------GGTTACT
TTTTANCCGTTTCACCAGACTCTGCTGTTCACTTGGGTAAACACGCCGCTGAAAATGATA
AACCATTCCTCTACGGTTTAGCCGCTCCATTCTTAATTGATTTCTTCTTTGATAAAGTTT
CTGAACTCCTCCCATACGTTGATATCGTTTTTGCCAATGAAAGTGAAGCCGCCACTCTTG
GTCGTAAAATGAACTGGGGTGAAGATTTAACCGTCATCGCTGAAAAATTAGCCGCTTGGG
AAAAAGTTAACACCAAACGTACTCGTACCGTCGTTTTCACCCAAGGTCCAGATGCCACTC
TTGTCTTCCAAAATGGTGTTTTAACAAAATACAACCCAATCAAAGTTGCCACTGAAGATA
TCCTCGATTTAAACGCTGCCGGTGATTCATTCTGTGGTGGTTTCCTTGCCGCTTACTCCA
ATGGTCAAGAAATCGCCAAATGTGTCGAAGCTGGTCACTATGCCTCTTGGGAAATATAGA
CAAAATGGTGCCACCGTCCCAGCCAGNAACCAAAAATCCAATTC
Length of connected seq. 1054
Full length Seq ID -
Full length Seq. -
Length of full length seq. -