VFB123 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

VFB123
Library	VF (Link to library)
Clone ID	VFB123 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16463-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/VF/VFB1-A/VFB123Q.Seq.d/
Representative seq. ID	VFB123P (Link to Original site)
Representative DNA sequence	>VFB123 (VFB123Q) /CSM/VF/VFB1-A/VFB123Q.Seq.d/ ATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCNGCTCCAGTTTTA ACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAAT GGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAA CGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTT ACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGA ACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAA AGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTC GGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCAT ACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTA GGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGXXXXXXXX XXGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTTGG TCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGAG AATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATT GAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGT CATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGT GGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGT CCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACAT AAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTT GTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCT AATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCA AACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCT
sequence update	2001. 6. 1
Translated Amino Acid sequence	iyfiwekinkINMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSE RDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFL GQTPESTHQVSILFSDR--- ---EFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVP GIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGG KGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRF VSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKG
Translated Amino Acid sequence (All Frames)	Frame A: iyfiwekinkINMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSE RDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFL GQTPESTHQVSILFSDR--- ---girclkvsfqsircnkdlvtqrlsinsnwsygfessrellcstsclltiphgs rytitrdvtrsslllsryssssfrcklstnpsqlsirrkgwcklptwfhgcqwww rsklstklfrwsratsricstirlwfrcsstiqsskrlcstrfithvrcqisf rlfsrshvrchhqrnssscrfkllqgqrfrcsfmgs Frame B: yilfgknkinkicxlqfppvvvhqlititqpqvlmvqffkisllinllisivn vsqnvlymlkvlvpmvisklpqvmyqngvklnsiklvrehqsspvslllvvkkvhpilk eiqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif vkhqnqhikyqfyslie--- ---EFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVP GIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGG KGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRF VSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKG Frame C: ifylgkinkinkyvxssfnhqwftn*qfklndrrcwsnfnsrfhfn*tcsfrst yprtcctcrcwcpwlfrsylkctkmvsilkswentnlhpflycwwkrfirfk rskrfrcqilyrrlygryssflyssikiprfhsytktstnklrskyvlgffr sntrintssinfil*--- ---nlkmpsivsihsmqrfghtktihfklvvwfiviqritllklnklpshhptwfq vlnhhqircykvvssliqilivivvtinksqsivhsprvvlkttnvmvswlsmvmvv kvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidsclkmpnlvs slisvtcpvspskkfkfvpfqtftrltkivlvyvrv
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value VFB123 (VFB123Q) /CSM/VF/VFB1-A/VFB123Q.Seq.d/ 2327 0.0 VFM191 (VFM191Q) /CSM/VF/VFM1-D/VFM191Q.Seq.d/ 1285 0.0 VFK159 (VFK159Q) /CSM/VF/VFK1-C/VFK159Q.Seq.d/ 1285 0.0 SFL238 (SFL238Q) /CSM/SF/SFL2-B/SFL238Q.Seq.d/ 1285 0.0 SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/ 1285 0.0 SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 1285 0.0 SFI642 (SFI642Q) /CSM/SF/SFI6-B/SFI642Q.Seq.d/ 1285 0.0 FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/ 1285 0.0 CFI885 (CFI885Q) /CSM/CF/CFI8-D/CFI885Q.Seq.d/ 1285 0.0 CFI634 (CFI634Q) /CSM/CF/CFI6-B/CFI634Q.Seq.d/ 1285 0.0
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF090443\|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1285 0.0 2 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 1285 0.0 4 AB064338\|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 111 3e-65 7 E65314\|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 86 3e-33 4 AP004595\|AP004595.1 Oceanobacillus iheyensis HTE831 genomic DNA, section 3/13. 72 2e-32 7 AX536932\|AX536932.1 Sequence 533 from Patent WO02064766. 101 2e-29 3 AJ400964\|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 1e-27 3 AJ400965\|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 1e-27 3 AB006327\|AB006327.1 Candida albicans mRNA for catalase, complete cds. 94 6e-27 3 U40704\|U40704.1 Candida albicans catalase (Cat) gene, complete cds. 86 1e-26 3
dna update	2003. 8.27
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF090443_1(AF090443\|pid:none) Dictyostelium discoideum catalase ... 456 e-126 BC086479_1(BC086479\|pid:none) Xenopus laevis hypothetical LOC495... 388 e-106 BC099349_1(BC099349\|pid:none) Xenopus laevis hypothetical LOC495... 388 e-106 (P17336) RecName: Full=Catalase; EC=1.11.1.6; &AE01429... 377 e-103 DQ104435_1(DQ104435\|pid:none) Anemonia viridis catalase mRNA, co... 374 e-102 EF687775_1(EF687775\|pid:none) Crassostrea gigas catalase mRNA, c... 366 1e-99 BT081149_1(BT081149\|pid:none) Caligus clemensi clone ccle-evs-50... 343 6e-93 CP001280_2409(CP001280\|pid:none) Methylocella silvestris BL2, co... 309 1e-82 AL034488_10(AL034488\|pid:none) Caenorhabditis elegans YAC Y54G11... 301 2e-80 CP000083_2375(CP000083\|pid:none) Colwellia psychrerythraea 34H, ... 297 5e-79
protein update	2009. 6.17
PSORT	psg: 0.89 gvh: 0.57 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.31 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 32.0 %: nuclear 20.0 %: extracellular, including cell wall 20.0 %: cytoplasmic 12.0 %: mitochondrial 8.0 %: endoplasmic reticulum 4.0 %: cytoskeletal 4.0 %: peroxisomal >> prediction for VFB123 is nuc
5' end seq. ID	VFB123F
5' end seq.	>VFB123F.Seq ATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCNGCTCCAGTTTTA ACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAAT GGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAA CGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTT ACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGA ACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAA AGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTC GGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCAT ACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTA GGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAG-------- --
Length of 5' end seq.	592
3' end seq. ID	VFB123Z
3' end seq.	>VFB123Z.Seq ----------GGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAA AGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTA ATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTC CAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATA CTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCG TAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTG GTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTG CTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATG ACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTT TCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTG CCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCT
Length of 3' end seq.	648
Connected seq. ID	VFB123P
Connected seq.	>VFB123P.Seq ATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCNGCTCCAGTTTTA ACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAAT GGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAA CGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTT ACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGA ACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAA AGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTC GGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCAT ACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTA GGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAG-------- --GGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACAAAGATTTGG TCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGAG AATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATT GAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGT CATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGT GGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGT CCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACAT AAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTT GTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCT AATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCA AACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCT
Length of connected seq.	1240
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas