>AFM145 (AFM145Q) /CSM/AF/AFM1-B/AFM145Q.Seq.d/
XXXXXXXXXXANANNAANNTTNNANANAANNAGGTTTNCNNNANANNANCNNNGTNTNAT
TTNNNTGTAANCNATTANAANATGGTNGGNCTNTNTNTNATTNCAATATCCAAAAANAAT
CNNCTNTCCANTTGGTNNTNAGATTAAGAGGTGGTATNCAAATNTTTGTCAAAACATTAA
NTGGTAAGACCATCACTNTTGAAGTTGAGGGNTCAGATAATATTGANAATGTTAAANCAA
AGATTCAAGNCAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAAC
AATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATT
TAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTA
TTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACA
AAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATG
GTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGAT
TAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAG
TTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATNC
CA

---XXXXXXXGXXXXXXVXFXCXXLXXGXXXXXXNIQKXSXXXLVXRLRGGXQXFVKTLX
GKTITXEVEGSDNIXNVKXKIQXKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL
VLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
RTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGXP

Frame A:
---XXXXXXXGXXXXXXVXFXCXXLXXGXXXXXXNIQKXSXXXLVXRLRGGXQXFVKTLX
GKTITXEVEGSDNIXNVKXKIQXKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHL
VLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG
RTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKTKIQDKEGXP


Frame B:
---xxxxxxxvxxxxxxxxxxvxxxxmvglxxixiskxnxlsxwxxd*evvxkxlskh*x
vrpsllklrxqiilxmlxqrfkxkkvshqtnkd*fslvnn*kmvvlslittfkrnplsi*
ssd*evvckflskpslvrllhxklkvlitlrmlkpksktkkvfhqinnvsfspvnnwrmv
vlslittfkrnplsi*fsd*evvckfl*klslvkplhsklkvvttlrm*kqkfktkkvx


Frame C:
---xxxxxxrfxxxxxxxixx*xixxwxxxxxxqypkxixxpxgxxikrwyxnxcqnixw
*dhhx*s*gxr*y*xc*xkdsxqrryptrptkinfrw*tirrwsysl*lqhskgihspfs
pqikrwyanfcqnphw*dyytxs*rf**h*ec*sqnprqrrystrsttshfrr*tiggws
ysl*lqhskgihspfssqikrwyanfcknshw*nhytrs*r**qh*ecknknsrqrryx

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM145 (AFM145Q) /CSM/AF/AFM1-B/AFM145Q.Seq.d/                       1130   0.0
AFL752 (AFL752Q) /CSM/AF/AFL7-C/AFL752Q.Seq.d/                       1128   0.0
AFJ718 (AFJ718Q) /CSM/AF/AFJ7-A/AFJ718Q.Seq.d/                       1128   0.0
CFH831 (CFH831Q) /CSM/CF/CFH8-B/CFH831Q.Seq.d/                       1126   0.0
AFH813 (AFH813Q) /CSM/AF/AFH8-A/AFH813Q.Seq.d/                       1126   0.0
SFK754 (SFK754Q) /CSM/SF/SFK7-C/SFK754Q.Seq.d/                       1122   0.0
SFK603 (SFK603Q) /CSM/SF/SFK6-A/SFK603Q.Seq.d/                       1122   0.0
SFJ684 (SFJ684Q) /CSM/SF/SFJ6-D/SFJ684Q.Seq.d/                       1122   0.0
SFJ531 (SFJ531Q) /CSM/SF/SFJ5-B/SFJ531Q.Seq.d/                       1122   0.0
SFJ493 (SFJ493Q) /CSM/SF/SFJ4-D/SFJ493Q.Seq.d/                       1122   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346871) Dictyostelium discoideum cDNA clone:dda25i11, 3' ...  1130   0.0    1
(BJ346650) Dictyostelium discoideum cDNA clone:dda24h13, 3' ...  1128   0.0    1
(BJ344651) Dictyostelium discoideum cDNA clone:dda20d05, 3' ...  1128   0.0    1
(BJ374825) Dictyostelium discoideum cDNA clone:ddc16n08, 3' ...  1126   0.0    1
(BJ343450) Dictyostelium discoideum cDNA clone:dda16j04, 3' ...  1126   0.0    1
(BJ402270) Dictyostelium discoideum cDNA clone:dds16f03, 3' ...  1122   0.0    1
(BJ402205) Dictyostelium discoideum cDNA clone:dds20g22, 3' ...  1122   0.0    1
(BJ402078) Dictyostelium discoideum cDNA clone:dds20m07, 3' ...  1122   0.0    1
(BJ401933) Dictyostelium discoideum cDNA clone:dds19j24, 3' ...  1122   0.0    1
(BJ401255) Dictyostelium discoideum cDNA clone:dds22l13, 3' ...  1122   0.0    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   372   e-102
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   372   e-102
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   372   e-102
M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   370   e-101
AY957885_1(AY957885|pid:none) Gracilaria lemaneiformis polyubiqu...   357   2e-97
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   357   3e-97
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   357   3e-97
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   357   3e-97
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   357   3e-97
S53719(S53719;S73107;S71069)polyubiquitin 6 - red alga (Gracilar...   355   1e-96

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM145 is 

>AFM145Z.Seq
XXXXXXXXXXANANNAANNTTNNANANAANNAGGTTTNCNNNANANNANCNNNGTNTNAT
TTNNNTGTAANCNATTANAANATGGTNGGNCTNTNTNTNATTNCAATATCCAAAAANAAT
CNNCTNTCCANTTGGTNNTNAGATTAAGAGGTGGTATNCAAATNTTTGTCAAAACATTAA
NTGGTAAGACCATCACTNTTGAAGTTGAGGGNTCAGATAATATTGANAATGTTAAANCAA
AGATTCAAGNCAAAGAAGGTATCCCACCAGACCAACAAAGATTAATTTTCGCTGGTAAAC
AATTAGAAGATGGTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATT
TAGTCCTCAGATTAAGAGGTGGTATGCAAATTTTTGTCAAAACCCTCACTGGTAAGACTA
TTACACTNGAAGTTGAAGGTTCTGATAACATTGAGAATGTTAAAGCCAAAATCCAAGACA
AAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTCGCCGGTAAACAATTGGAGGATG
GTCGTACTCTCTCTGATTACAACATTCAAAAGGAATCCACTCTCCATTTAGTTCTCAGAT
TAAGAGGTGGTATGCAAATTTTTGTAAAAACTCTCACTGGTAAAACCATTACACTCGAAG
TTGAAGGTAGTGACAACATTGAGAATGTAAAAACAAAAATTCAAGACAAAGAAGGTATNC
CA