NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM144
Library AF
(Link to library)
Clone ID AFM144
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID
(Link to Original site)
Representative DNA sequence 
>AFM144 (AFM144Q) /CSM/AF/AFM1-B/AFM144Q.Seq.d/
TTAAAGATGCCAGTATCAGAAGATTCATTAGGTCGTATTTTCAATGGTTCAGGTAAACCA
GTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGATATTCAAGGTCAACCAATC
AATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAACTGGTATCTCTGCTATTGAT
ACTATGAATTCAATTGCTCGTGGTCAAAAGATTCCAATTTTCTCTGCTGCAGGTTTACCA
CACAATGAAATTGCCGCTCAAATTTGTCGTCAAGCTGGTTTAGTTAAAAAATCAGGTAAA
GGTGTTATTGATGATCATGAAGATAATTTTGCTATTGTATTCGCAGCTATGGGTGTTAAT
ATGGAAACTGCATCATTTTTCAAACGTGATTTCGAAGAATCAGGTTCTATGGATAGAACT
GCTCTCTTCCTTAATTTAGCAGATCATCCAACCATCGAACGTATTATTACTCCACGTCTT
GCATTGACCACCGCCGAATATCTTGCATATCAATGTGAAAAACACGTTTTAGTTCTTTTA
ACCGATATGTCTTCATATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGTGAAGAAGTA
CCAGGTCGTCGTGXXXXXXXXXX
sequence update 2009. 4. 3
Translated Amino Acid sequence 
LKMPVSEDSLGRIFNGSGKPVDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQTGISAID
TMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSGKGVIDDHEDNFAIVFAAMGVN
METASFFKRDFEESGSMDRTALFLNLADHPTIERIITPRLALTTAEYLAYQCEKHVLVLL
TDMSSYADALREVSAAREEVPGRR---
Translated Amino Acid sequence (All Frames) 
Frame A:
LKMPVSEDSLGRIFNGSGKPVDKGPNVLAEEYLDIQGQPINPSVRVYPQEMIQTGISAID
TMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKSGKGVIDDHEDNFAIVFAAMGVN
METASFFKRDFEESGSMDRTALFLNLADHPTIERIITPRLALTTAEYLAYQCEKHVLVLL
TDMSSYADALREVSAAREEVPGRR---


Frame B:
*rcqyqkih*vvfsmvqvnqlikvqmf*lknt*ifkvnqsihqlefthkk*fklvsllli
l*iqllvvkrfqfsllqvyhtmklplkfvvklv*lknqvkvllmimkiilllysqlwvli
wklhhfsnvisknqvlwiellssli*qiiqpsnvlllhvlh*pppnilhinvkntf*ff*
piclhmlmlfvrylllvkkyqvv---


Frame C:
kdasirrfirsyfqwfr*ts**rskcfs*rilrysrstnqsis*slptrndsnwylcy*y
yefncswskdsnflccrfttq*ncrsnlssswfs*kir*rcy**s*r*fcycirsygc*y
gnciifqt*frrirfyg*ncslp*fsrssnhrtyyystscidhrriscism*ktrfssfn
ryvfic*css*giccs*rstrss---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM144 (AFM144Q) /CSM/AF/AFM1-B/AFM144Q.Seq.d/                       1215   0.0
VFA667 (VFA667Q) /CSM/VF/VFA6-C/VFA667Q.Seq.d/                       1193   0.0
VFF429 (VFF429Q) /CSM/VF/VFF4-B/VFF429Q.Seq.d/                        870   0.0
SFC779 (SFC779Q) /CSM/SF/SFC7-D/SFC779Q.Seq.d/                        821   0.0
AFM386 (AFM386Q) /CSM/AF/AFM3-D/AFM386Q.Seq.d/                        783   0.0
AFA247 (AFA247Q) /CSM/AF/AFA2-B/AFA247Q.Seq.d/                        751   0.0
SLA124 (SLA124Q) /CSM/SL/SLA1-A/SLA124Q.Seq.d/                        726   0.0
AFO705 (AFO705Q) /CSM/AF/AFO7-A/AFO705Q.Seq.d/                        694   0.0
AFH533 (AFH533Q) /CSM/AF/AFH5-B/AFH533Q.Seq.d/                        686   0.0
CFD847 (CFD847Q) /CSM/CF/CFD8-B/CFD847Q.Seq.d/                        662   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ329529) Dictyostelium discoideum cDNA clone:dda25g11, 5' ...  1213   0.0    1
(BJ410973) Dictyostelium discoideum cDNA clone:ddv2e18, 5' e...  1124   0.0    2
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...   720   0.0    2
(BJ410140) Dictyostelium discoideum cDNA clone:ddv11j08, 5' ...   870   0.0    1
(BJ388714) Dictyostelium discoideum cDNA clone:dds6n19, 5' e...   577   0.0    2
(BJ329680) Dictyostelium discoideum cDNA clone:dda25l21, 5' ...   783   0.0    1
(BJ325566) Dictyostelium discoideum cDNA clone:dda1m12, 5' e...   737   0.0    2
(AU060074) Dictyostelium discoideum slug cDNA, clone SLA124.      726   0.0    1
(BJ328926) Dictyostelium discoideum cDNA clone:dda30j01, 5' ...   694   0.0    1
(BJ326371) Dictyostelium discoideum cDNA clone:dda16a09, 5' ...   686   0.0    1
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q76NU1) RecName: Full=V-type proton ATPase subunit B;          ...   402   e-111
AY641405_1(AY641405|pid:none) Entamoeba histolytica vacuolar ATP...   355   4e-97
AY197611_1(AY197611|pid:none) Artemia franciscana vacuolar proto...   351   8e-96
EU727173_1(EU727173|pid:none) Bombyx mori strain NB vacuolar ATP...   351   8e-96
AY169409_1(AY169409|pid:none) Spodoptera littoralis H(+)-ATPase ...   351   1e-95
AF037468_1(AF037468|pid:none) Culex pipiens quinquefasciatus B s...   351   1e-95
(P31410) RecName: Full=V-type proton ATPase subunit B;          ...   351   1e-95
AF189779_1(AF189779|pid:none) Carcinus maenas vacuolar ATP synth...   348   5e-95
DQ507282_1(DQ507282|pid:none) Belgica antarctica clone Ba-U06 va...   348   9e-95
BC115214_1(BC115214|pid:none) Danio rerio ATPase, H+ transportin...   342   5e-93
protein update 2009. 4. 6
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM144 is

5' end seq. ID AFM144F
5' end seq. 
>AFM144F.Seq
TTAAAGATGCCAGTATCAGAAGATTCATTAGGTCGTATTTTCAATGGTTCAGGTAAACCA
GTTGATAAAGGTCCAAATGTTTTAGCTGAAGAATACTTAGATATTCAAGGTCAACCAATC
AATCCATCAGTTAGAGTTTACCCACAAGAAATGATTCAAACTGGTATCTCTGCTATTGAT
ACTATGAATTCAATTGCTCGTGGTCAAAAGATTCCAATTTTCTCTGCTGCAGGTTTACCA
CACAATGAAATTGCCGCTCAAATTTGTCGTCAAGCTGGTTTAGTTAAAAAATCAGGTAAA
GGTGTTATTGATGATCATGAAGATAATTTTGCTATTGTATTCGCAGCTATGGGTGTTAAT
ATGGAAACTGCATCATTTTTCAAACGTGATTTCGAAGAATCAGGTTCTATGGATAGAACT
GCTCTCTTCCTTAATTTAGCAGATCATCCAACCATCGAACGTATTATTACTCCACGTCTT
GCATTGACCACCGCCGAATATCTTGCATATCAATGTGAAAAACACGTTTTAGTTCTTTTA
ACCGATATGTCTTCATATGCTGATGCTCTTCGTGAGGTATCTGCTGCTCGTGAAGAAGTA
CCAGGTCGTCGTGXXXXXXXXXX
Length of 5' end seq. 623
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -