>VFA868 (VFA868Q) /CSM/VF/VFA8-C/VFA868Q.Seq.d/
TTATGCTCAACACAAATTCCCATCATCATCTGAAGATTCATCATCAAATGATTCAAATAG
CCAAGTAACTGGTTCACAATCATACTCTGGTTCACAATCCGATTCAAACTCAGGATCAGA
ATCCCACACAATTAACACCGGTTCATCATATTCTGGTTCTGGTTCTGGTTCAAGTGGTAT
TTCAGGCGGTTCTGGTTCAGGTTCAGGTTCAGGTTCAGGCTCAGGTAGCGGTTCAGGTTC
AGGTTCAGGTGCTGTCAGTGGTTCACAATCAGGTTCAGGTGCTGTCAGTGGTTCACAATC
AGGTTCAGGTGCTGTTAGTGGTTCACAATCTGGTGTCCAAACTGGTTCACAATCAGGTGC
TGGTAGTGCTTCAGGTGCTTTCACTGGTAACCCATCTGGTTCTCAATCTCAAGAAATTAA
TACTGGTTCATCATACAGTGGTAGTGGTAGTGGTGCCCCAACTGGTGCCGCTACTGGTTC
AGGTTCAGGTTCAGGTTCATCAGGAACAGTTTACTATTAAATAAATTTTAAATTATAACG
AAATCATATTTTTCCAGTTTTCAXXXXXXXXXX

YAQHKFPSSSEDSSSNDSNSQVTGSQSYSGSQSDSNSGSESHTINTGSSYSGSGSGSSGI
SGGSGSGSGSGSGSGSGSGSGSGAVSGSQSGSGAVSGSQSGSGAVSGSQSGVQTGSQSGA
GSASGAFTGNPSGSQSQEINTGSSYSGSGSGAPTGAATGSGSGSGSSGTVYY*infkl*r
nhifpvf---

Frame A:
lcstqipiii*rfiik*fk*psnwftiilwftirfklririphn*hrfiifwfwfwfkwy
frrfwfrfrfrfrlr*rfrfrfrccqwftirfrccqwftirfrcc*wftiwcpnwftirc
w*cfrcfhw*piwfsisrn*ywfiiqw*w*wcpnwcrywfrfrfrfirnslllnkf*iit
ksyfssf---


Frame B:
YAQHKFPSSSEDSSSNDSNSQVTGSQSYSGSQSDSNSGSESHTINTGSSYSGSGSGSSGI
SGGSGSGSGSGSGSGSGSGSGSGAVSGSQSGSGAVSGSQSGSGAVSGSQSGVQTGSQSGA
GSASGAFTGNPSGSQSQEINTGSSYSGSGSGAPTGAATGSGSGSGSSGTVYY*infkl*r
nhifpvf---


Frame C:
mlntnshhhlkihhqmiqiak*lvhnhtlvhnpiqtqdqnptqltpvhhilvlvlvqvvf
qavlvqvqvqvqaqvavqvqvqvlsvvhnqvqvlsvvhnqvqvllvvhnlvsklvhnqvl
vvlqvlslvthlvlnlkklilvhhtvvvvvvpqlvpllvqvqvqvhqeqftik*ilnyne
iiffqf---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA868 (VFA868Q) /CSM/VF/VFA8-C/VFA868Q.Seq.d/                        620   e-177
SLF225 (SLF225Q) /CSM/SL/SLF2-B/SLF225Q.Seq.d/                        620   e-177
VHJ422 (VHJ422Q) /CSM/VH/VHJ4-A/VHJ422Q.Seq.d/                        599   e-170
VSG609 (VSG609Q) /CSM/VS/VSG6-A/VSG609Q.Seq.d/                        591   e-168
VSK169 (VSK169Q) /CSM/VS/VSK1-C/VSK169Q.Seq.d/                        587   e-167
VHQ154 (VHQ154Q) /CSM/VH/VHQ1-C/VHQ154Q.Seq.d/                        587   e-167
VSD364 (VSD364Q) /CSM/VS/VSD3-C/VSD364Q.Seq.d/                        581   e-165
VHI283 (VHI283Q) /CSM/VH/VHI2-D/VHI283Q.Seq.d/                        579   e-164
VSC419 (VSC419Q) /CSM/VS/VSC4-A/VSC419Q.Seq.d/                        551   e-156
VFB716 (VFB716Q) /CSM/VF/VFB7-A/VFB716Q.Seq.d/                        537   e-152

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L36204|L36204.1 Dictyostelium discoideum cysteine proteinase (CP4) mRNA, complete cds.    48  1e-05  3
AY212268|AY212268.1 Dictyostelium discoideum component of the counting factor complex (cf45-1) gene, complete cds.    40  2e-05  4
U72746|U72746.1 Dictyostelium discoideum cysteine proteinase (cprG) mRNA, complete cds.    52  2e-05  2
AY223858|AY223858.1 Trypanosoma evansi clone ShTat1.3 procyclin EP2 (EP2) gene, complete cds.    52  0.001  2
BX558403|BX558403.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse38d05_q1c.    52  0.001  2
AL475894|AL475894.1 T. brucei sheared genomic DNA clone 196a01, forward sequence.    48  0.001  2
BX564787|BX564787.1 Glossina morsitans morsitans (Tseatse fly) EST from adult infected  midgut library, clone Tse73f11_q1c.    52  0.002  2
X04814|X04814.1 Trypanosoma brucei mRNA for procyclic form specific polypeptide with dipeptide repeat.    52  0.002  2
AF353632|AF353632.1 Trypanosoma brucei brucei surface protein EP3-3 procyclin precursor (EP3-3) gene, EP3-3-GPEET/PAG3-2 allele, complete cds.    52  0.002  2
AF353631|AF353631.1 Trypanosoma brucei brucei surface protein EP3-3 procyclin precursor (EP3-3) gene, EP3-3-GPEET/PAG3-1 allele, complete cds.    52  0.002  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000393_2258(CP000393|pid:none) Trichodesmium erythraeum IMS101...    49   1e-04
CP000828_875(CP000828|pid:none) Acaryochloris marina MBIC11017, ...    47   3e-04
BA000004_971(BA000004|pid:none) Bacillus halodurans C-125 DNA, c...    47   3e-04
CP001325_267(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    46   8e-04
U00051_3(U00051|pid:none) Caenorhabditis elegans cosmid F42G9, c...    45   0.001
U00051_4(U00051|pid:none) Caenorhabditis elegans cosmid F42G9, c...    45   0.001
AM407005_1(AM407005|pid:none) Staphylococcus aureus partial clfB...    45   0.001
AM407050_1(AM407050|pid:none) Staphylococcus aureus partial clfB...    45   0.002
AM407093_1(AM407093|pid:none) Staphylococcus aureus partial clfB...    45   0.002
AM407060_1(AM407060|pid:none) Staphylococcus aureus partial clfB...    45   0.002

 psg: 0.49  gvh: 0.46  alm: 0.59  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: cytoplasmic
	 32.0 %: nuclear
	 28.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system

>> prediction for VFA868 is cyt

>VFA868F.Seq
TTATGCTCAACACAAATTCCCATCATCATCTGAAGATTCATCATCAAATGATTCAAATAG
CCAAGTAACTGGTTCACAATCATACTCTGGTTCACAATCCGATTCAAACTCAGGATCAGA
ATCCCACACAATTAACACCGGTTCATCATATTCTGGTTCTGGTTCTGGTTCAAGTGGTAT
TTCAGGCGGTTCTGGTTCAGGTTCAGGTTCAGGTTCAGGCTCAGGTAGCGGTTCAGGTTC
AGGTTCAGGTGCTGTCAGTGGTTCACAATCAGGTTCAGGTGCTGTCAGTGGTTCACAATC
AGGTTCAGGTGCTGTTAGTGGTTCACAATCTGGTGTCCAAACTGGTTCACAATCAGGTGC
TGGTAGTGCTTCAGGTGCTTTCACTGGTAACCCATCTGGTTCTCAATCTCAAGAAATTAA
TACTGGTTCATCATACAGTGGTAGTGGTAGTGGTGCCCCAACTGGTGCCGCTACTGGTTC
AGGTTCAGGTTCAGGTTCATCAGGAACAGTTTACTATTAAATAAATTTTAAATTATAACG
AAATCATATTTTTCCAGTTTTCA----------