VFA863
Library VF
(Link to library)
Clone ID VFA863
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID VFA863Z
(Link to Original site)
Representative DNA sequence
>VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/
XXXXXXXXXXATCATTGGTNNNNNAATGNNTGNTGGTNNAGNTNNNNCNNCAACTCANCC
AGGTANANCAGCTNCNNCAGCTCCNCCATCTTCNNNCCANNCAGGTAGANCAGCTCCNCC
NCCNCCNCCATCTGTTGGTAAAAGTGCTCCNCCACCACCNCCACCATCCCATAANACACC
TGCAGCTCCACCATCAGNCNNAGGTNCTCCACCACCAACCACCACCTCCACCACCACCTT
CTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTG
GTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTC
TTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTT
CACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAG
AAGATGATGAAGAAGATGATGATGACGATGATNAATGGTCAGATTATTAAATTATTCTTA
ACAAAATTCAAATTCAAAAAAATCATNAATAAAGATT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---SLVXXXXXVXXXXQLXQVXQLXQLXHLXXXQVXQLXXXXHLLVKVLXHHXHHPIXHL
QLHHQXXVLHHQPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASL
KAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDXWSDY*iiln
kiqiqknhx*r


Translated Amino Acid sequence (All Frames)
Frame A:
---SLVXXXXXVXXXXQLXQVXQLXQLXHLXXXQVXQLXXXXHLLVKVLXHHXHHPIXHL
QLHHQXXVLHHQPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASL
KAVDKTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDXWSDY*iiln
kiqiqknhx*r


Frame B:
---hwxxnxxwxxxxxnsxrxxsxxssxifxpxr*xssxxxxicw*kcsxttxtip*xtc
sstixxrxsttnhhlhhhllvvhhlhhhqwpvllhhqevvvpaaveemifwlpfvvvqvl
rllikpihsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkkmmmtmxngqiiklflt
kfkfkkixnkd


Frame C:
---igxxmxxgxxxxxtxpgxxaxxappssxxxgrxapppppsvgksappppppshxtpa
appsxxgxppptttstttf*wsttstttngqcssiirrwwcqrrwkk*sfgfhs*wcks*
gc**nqstprysksw**rftffs*yfscsyg*s*rwyerr**rr***r*xmvrllnys*q
nsnskksxiki


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/ 404 e-112
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/ 404 e-112
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/ 404 e-112
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/ 404 e-112
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/ 404 e-112
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/ 404 e-112
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/ 404 e-112
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/ 404 e-112
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/ 404 e-112
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/ 404 e-112

own update 2002.12.15
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds. 404 e-164 4
BQ258443|BQ258443.1 fz79g06.y1 Sugano SJD adult male Danio rerio cDNA clone 5914930 5' similar to SW:ROA1_HUMAN P09651 HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN A1 ;, mRNA sequence. 50 0.031 1
AL137082|AL137082.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22. 46 0.48 1
AY088091|AY088091.1 Arabidopsis thaliana clone 41181 mRNA, complete sequence. 46 0.48 1
AB045574|AB045574.1 Danio rerio DNA, fkk-7b locus, insertion site of the medaka fish Tol2 element. 46 0.48 1
X75304|X75304.1 H.sapiens giantin mRNA. 44 1.2 2
AC133750|AC133750.2 Homo sapiens 3 BAC RP11-619K22 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 44 1.9 1
U18348|U18348.1 Phaseolus vulgaris phaseolin G-box binding protein PG1 (PG1) mRNA, complete cds. 44 1.9 1
D25542|D25542.1 Human mRNA for golgi antigen gcp372, complete cds. 44 1.9 1
BQ948820|BQ948820.1 AGENCOURT_8876490 NIH_MGC_101 Homo sapiens cDNA clone IMAGE:6464098 5', mRNA sequence. 44 1.9 1
dna update 2003. 8.26
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A... 83 6e-15
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso... 39 0.076
AM494940_72(AM494940|pid:none) Leishmania braziliensis chromosom... 34 3.3
DQ296176_1(DQ296176|pid:none) Brassica rapa clone 34 unknown mRNA. 32 9.5

protein update 2009. 2. 5
PSORT

psg: 0.84 gvh: 0.62 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.19
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar

>> prediction for VFA863 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFA863Z
3' end seq.
>VFA863Z.Seq
----------ATCATTGGTNNNNNAATGNNTGNTGGTNNAGNTNNNNCNNCAACTCANCC
AGGTANANCAGCTNCNNCAGCTCCNCCATCTTCNNNCCANNCAGGTAGANCAGCTCCNCC
NCCNCCNCCATCTGTTGGTAAAAGTGCTCCNCCACCACCNCCACCATCCCATAANACACC
TGCAGCTCCACCATCAGNCNNAGGTNCTCCACCACCAACCACCACCTCCACCACCACCTT
CTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTG
GTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTC
TTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTT
CACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAG
AAGATGATGAAGAAGATGATGATGACGATGATNAATGGTCAGATTATTAAATTATTCTTA
ACAAAATTCAAATTCAAAAAAATCATNAATAAAGATT
Length of 3' end seq. 567
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -