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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFA826
Library VF
(Link to library)
Clone ID VFA826
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09539-1
Original site URL
Representative seq. ID VFA826P
(Link to Original site)
Representative DNA sequence 
>VFA826 (VFA826Q) /CSM/VF/VFA8-B/VFA826Q.Seq.d/
AATAATAAAAAAAATGCCAATAACATTTAAAGTTTGTGATAAAAAAGAAAAAAAAGTAAC
ATTAAATGATTTTTCAATTAATCAATTTATAAAAGATGATGTTAAAAAGTTAAATCCTAG
AGAAAATAAATCGGATAAAGTTTATTATGATGCAATTAAGCAAGGAAAATCAAAACAAGA
AGCATCAAAAATTTATAAAGAATTTAGTGAAAAAGAGAAAGAATTATATGAAAAAAAGAT
TGAAGATATTTGTAATAGTAAAAAAGTTTTAAAATCAAGTTTTGTTGGTGAACCATCTGG
TGATTGTGATGGTGGTGGTTTAAAATCAGTAGGATTAAATGGTTTTGTCCATTCTGCATG
GAAGGCACATAATAATCATCACAGTTTAGTTTTACGATGTGATAATATTTGGATGGCCGA
TTTTAACTCAATTTTCATTTTATGTTAATAAAAATTCTGAACAATTACGTACAAACTTTG
TAGATTTCAATGGTGAGAAAACXXXXXXXXXXANATCGTTAATGTCAATTATNAAAAAGT
ATTTTNAATTTGTAATGCANACANAATNTGGCTTACCANAAGTAACNCTATTAGGTGAAA
TTAGTGATTGGGTTAATTTAAAANAAANAGTTTNTTTATTAATTCATTTTGANACTGAAA
ANAATCAAATGTCAAAATGGTTAAAGTATTTATTACCAATTATGGATAAATTCATTGAAT
NTGCAAATGGAAATCCANATATTAAATGGTGGAATCNAATGGTNAACTATAATGAACNAT
CAGGTGGATNTGAGTTATCAGGTTGGTTATCAAGNTTTTGTCNTTTTACAAATGATGGTG
ATTTTCAANAAANAAGTTTAATGGATTACTTTCCNTTTCCNATAGTTGATGGATATAATA
NACCNAATGGATTTTTATCAGCNCCNATAAAATTGATTGATTATGATCNTTCAGAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
**kkcq*hlkfvikkkkk*h*mifqlinl*kmmlks*ilekinrikfimmqlskenqnkk
hqkfiknlvkkrknymkkrlkifvivkkf*nqvllvnhlvivmvvv*nq*d*mvlsilhg
rhiiiitv*FYDVIIFGWPILTQFSFYVNKNSEQLRTNFVDFNGEK---

---XSLMSIXKKYFXFVMXTXXGLPXVTLLGEISDWVNLKXXVXLLIHFXTEXNQMSKWL
KYLLPIMDKFIEXANGNPXIKWWNXMVNYNEXSGGXELSGWLSXFCXFTNDGDFQXXSLM
DYFPFPIVDGYNXPNGFLSAPIKLIDYDXSE
Translated Amino Acid sequence (All Frames) 
Frame A:
nnkknanni*sl**krkksnik*ffn*siykr*c*kvks*rk*ig*sll*cn*arkiktr
siknl*ri**krerii*kkd*ryl***ksfkikfcw*tiw*l*wwwfkisrikwfcpfcm
egt**ssqfsftm**yldgrf*lnfhfmlikilnnyvqtl*ismvrk---

---XSLMSIXKKYFXFVMXTXXGLPXVTLLGEISDWVNLKXXVXLLIHFXTEXNQMSKWL
KYLLPIMDKFIEXANGNPXIKWWNXMVNYNEXSGGXELSGWLSXFCXFTNDGDFQXXSLM
DYFPFPIVDGYNXPNGFLSAPIKLIDYDXSE

Frame B:
iikkmpitfkvcdkkekkvtlndfsinqfikddvkklnprenksdkvyydaikqgkskqe
askiykefsekekelyekkiedicnskkvlkssfvgepsgdcdggglksvglngfvhsaw
kahnnhhslvlrcdniwmadfnsifilc**kf*tityklcrfqw*en---

---xr*cqlxksixnl*cxxnxayxk*xy*vklvigli*xkxfxy*filxlkxikcqng*
siyyqlwinslnxqmeixilnggixwxtimnxqvdxsyqvgyqxfvxlqmmvifxkxv*w
itfxfx*lmdiixxmdfyqxx*n*limixq

Frame C:
**kkcq*hlkfvikkkkk*h*mifqlinl*kmmlks*ilekinrikfimmqlskenqnkk
hqkfiknlvkkrknymkkrlkifvivkkf*nqvllvnhlvivmvvv*nq*d*mvlsilhg
rhiiiitv*FYDVIIFGWPILTQFSFYVNKNSEQLRTNFVDFNGEK---

---ivnvnyxkvfxicnaxxxwltxsnxir*n**lg*fkxxsxfinsf*x*kxsnvkmvk
vfitnyg*ih*xckwksxy*mvesngxl**tirwx*virlvikxlsfyk*w*fsxxkfng
llsxsxs*wi*xtxwifisxxkid*l*sfr
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA826 (VFA826Q) /CSM/VF/VFA8-B/VFA826Q.Seq.d/                       1465   0.0
VFG724 (VFG724Q) /CSM/VF/VFG7-A/VFG724Q.Seq.d/                         56   1e-06
VFH449 (VFH449Q) /CSM/VF/VFH4-C/VFH449Q.Seq.d/                         48   3e-04
AFB580 (AFB580Q) /CSM/AF/AFB5-D/AFB580Q.Seq.d/                         48   3e-04
AFD728 (AFD728Q) /CSM/AF/AFD7-B/AFD728Q.Seq.d/                         46   0.001
VSH613 (VSH613Q) /CSM/VS/VSH6-A/VSH613Q.Seq.d/                         40   0.061
VSH592 (VSH592Q) /CSM/VS/VSH5-D/VSH592Q.Seq.d/                         40   0.061
SLH629 (SLH629Q) /CSM/SL/SLH6-B/SLH629Q.Seq.d/                         38   0.24
SLA766 (SLA766Q) /CSM/SL/SLA7-C/SLA766Q.Seq.d/                         38   0.24
AFO391 (AFO391Q) /CSM/AF/AFO3-D/AFO391Q.Seq.d/                         38   0.24
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    36  0.002  12
AX458578|AX458578.1 Sequence 124 from Patent WO0246454.           44  0.015  5
AC107994|AC107994.1 Homo sapiens chromosome 18 clone RP11-316N5 map 18, LOW-PASS SEQUENCE SAMPLING.    52  0.025  3
BX088581|BX088581.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-209H6.    38  0.038  7
BF097979|BF097979.1 EST416052 tomato nutrient deficient roots Lycopersicon esculentum cDNA clone cLEW24B16 5' sequence, mRNA sequence.    50  0.051  1
AW737899|AW737899.1 EST339326 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD4J9 5', mRNA sequence.    50  0.051  1
BG130220|BG130220.1 EST475866 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF29L7 5' sequence, mRNA sequence.    50  0.051  1
BE434665|BE434665.1 EST405743 tomato breaker fruit, TIGR Lycopersicon esculentum cDNA clone cLEG20E7, mRNA sequence.    50  0.051  1
AI778557|AI778557.1 EST259436 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES5P3, mRNA sequence.    50  0.051  1
BE354506|BE354506.1 EST355849 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD10L12, mRNA sequence.    50  0.051  1
dna update 2003. 8.18
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000113_2189(CP000113|pid:none) Myxococcus xanthus DK 1622, com...    57   1e-06
AM746676_7829(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    55   5e-06
AM920431_1540(AM920431|pid:none) Penicillium chrysogenum Wiscons...    53   2e-05
AE015928_4406(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    45   0.004
CP000875_3836(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ...    42   0.040
CU633900_662(CU633900|pid:none) Podospora anserina genomic DNA c...    41   0.053
(Q5UQ60) RecName: Full=Uncharacterized protein L662;  &AY653733_...    40   0.090
CU638743_122(CU638743|pid:none) Podospora anserina genomic DNA c...    40   0.12
AM920437_1895(AM920437|pid:none) Penicillium chrysogenum Wiscons...    37   0.76
AM746676_1988(AM746676|pid:none) Sorangium cellulosum 'So ce 56'...    37   0.99
protein update 2009. 2. 5
PSORT 

 psg: 0.75  gvh: 0.42  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 24.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for VFA826 is cyt
5' end seq. ID VFA826F
5' end seq. 
>VFA826F.Seq
AATAATAAAAAAAATGCCAATAACATTTAAAGTTTGTGATAAAAAAGAAAAAAAAGTAAC
ATTAAATGATTTTTCAATTAATCAATTTATAAAAGATGATGTTAAAAAGTTAAATCCTAG
AGAAAATAAATCGGATAAAGTTTATTATGATGCAATTAAGCAAGGAAAATCAAAACAAGA
AGCATCAAAAATTTATAAAGAATTTAGTGAAAAAGAGAAAGAATTATATGAAAAAAAGAT
TGAAGATATTTGTAATAGTAAAAAAGTTTTAAAATCAAGTTTTGTTGGTGAACCATCTGG
TGATTGTGATGGTGGTGGTTTAAAATCAGTAGGATTAAATGGTTTTGTCCATTCTGCATG
GAAGGCACATAATAATCATCACAGTTTAGTTTTACGATGTGATAATATTTGGATGGCCGA
TTTTAACTCAATTTTCATTTTATGTTAATAAAAATTCTGAACAATTACGTACAAACTTTG
TAGATTTCAATGGTGAGAAAAC----------
Length of 5' end seq. 502
3' end seq. ID VFA826Z
3' end seq. 
>VFA826Z.Seq
----------ANATCGTTAATGTCAATTATNAAAAAGTATTTTNAATTTGTAATGCANAC
ANAATNTGGCTTACCANAAGTAACNCTATTAGGTGAAATTAGTGATTGGGTTAATTTAAA
ANAAANAGTTTNTTTATTAATTCATTTTGANACTGAAAANAATCAAATGTCAAAATGGTT
AAAGTATTTATTACCAATTATGGATAAATTCATTGAATNTGCAAATGGAAATCCANATAT
TAAATGGTGGAATCNAATGGTNAACTATAATGAACNATCAGGTGGATNTGAGTTATCAGG
TTGGTTATCAAGNTTTTGTCNTTTTACAAATGATGGTGATTTTCAANAAANAAGTTTAAT
GGATTACTTTCCNTTTCCNATAGTTGATGGATATAATANACCNAATGGATTTTTATCAGC
NCCNATAAAATTGATTGATTATGATCNTTCAGAA
Length of 3' end seq. 444
Connected seq. ID VFA826P
Connected seq. 
>VFA826P.Seq
AATAATAAAAAAAATGCCAATAACATTTAAAGTTTGTGATAAAAAAGAAAAAAAAGTAAC
ATTAAATGATTTTTCAATTAATCAATTTATAAAAGATGATGTTAAAAAGTTAAATCCTAG
AGAAAATAAATCGGATAAAGTTTATTATGATGCAATTAAGCAAGGAAAATCAAAACAAGA
AGCATCAAAAATTTATAAAGAATTTAGTGAAAAAGAGAAAGAATTATATGAAAAAAAGAT
TGAAGATATTTGTAATAGTAAAAAAGTTTTAAAATCAAGTTTTGTTGGTGAACCATCTGG
TGATTGTGATGGTGGTGGTTTAAAATCAGTAGGATTAAATGGTTTTGTCCATTCTGCATG
GAAGGCACATAATAATCATCACAGTTTAGTTTTACGATGTGATAATATTTGGATGGCCGA
TTTTAACTCAATTTTCATTTTATGTTAATAAAAATTCTGAACAATTACGTACAAACTTTG
TAGATTTCAATGGTGAGAAAAC----------ANATCGTTAATGTCAATTATNAAAAAGT
ATTTTNAATTTGTAATGCANACANAATNTGGCTTACCANAAGTAACNCTATTAGGTGAAA
TTAGTGATTGGGTTAATTTAAAANAAANAGTTTNTTTATTAATTCATTTTGANACTGAAA
ANAATCAAATGTCAAAATGGTTAAAGTATTTATTACCAATTATGGATAAATTCATTGAAT
NTGCAAATGGAAATCCANATATTAAATGGTGGAATCNAATGGTNAACTATAATGAACNAT
CAGGTGGATNTGAGTTATCAGGTTGGTTATCAAGNTTTTGTCNTTTTACAAATGATGGTG
ATTTTCAANAAANAAGTTTAATGGATTACTTTCCNTTTCCNATAGTTGATGGATATAATA
NACCNAATGGATTTTTATCAGCNCCNATAAAATTGATTGATTATGATCNTTCAGAA
Length of connected seq. 946
Full length Seq ID -
Full length Seq. -
Length of full length seq. -