VFA815
Library VF
(Link to library)
Clone ID VFA815
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14968-1
Original site URL
Representative seq. ID VFA815F
(Link to Original site)
Representative DNA sequence
>VFA815 (VFA815Q) /CSM/VF/VFA8-A/VFA815Q.Seq.d/
AATTCCCAACACACACAACAAAATAAAATGAGCACAGAAGGTAAAGTTATTACATGTAAA
GCAGCAGTGGCTTGGGAAGCCAAGAAACCATTGGTAATTGAAGATATTGAAGTTCAACCA
CCACAAAAAGGTGAAGTCAGAATTAAAATTTTATATACTGGTGTTTGTCATACAGATTCA
TATACATTAAGTGGTAGTGATCCAGAAGGTATTTTTCCATGTATTTTAGGACATGAAGGT
GGTGGTATTGTTGAGAGTATTGGTGAAGGTGTTACAAGTGTTAAAGTTGGTGATCATGTA
ATTCCTTTATACATTCCAGAATGTGGAACATGTAAATTCTGTACAAGCAACAAGACTAAT
CTTTGTTCAAAGATTCGTATCACTCAAGGTAAAGGTCAAATGCCAGATGGTACCACAAGA
TTCAAATGCAAGGGTAAGGAAATCTTCCACTTTATGGGCACAAGCACTTTCTCACAATAC
ACTGTTCTCCCAGAGATTAGTTGTTGTGTCGTTAGAGAGGATGCACCATTGGATAAGGTT
TGTTTGTTGGGTTGTGGCATTACCACTGGTTTCGGTGCCXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
NSQHTQQNKMSTEGKVITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHTDS
YTLSGSDPEGIFPCILGHEGGGIVESIGEGVTSVKVGDHVIPLYIPECGTCKFCTSNKTN
LCSKIRITQGKGQMPDGTTRFKCKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKV
CLLGCGITTGFG---


Translated Amino Acid sequence (All Frames)
Frame A:
NSQHTQQNKMSTEGKVITCKAAVAWEAKKPLVIEDIEVQPPQKGEVRIKILYTGVCHTDS
YTLSGSDPEGIFPCILGHEGGGIVESIGEGVTSVKVGDHVIPLYIPECGTCKFCTSNKTN
LCSKIRITQGKGQMPDGTTRFKCKGKEIFHFMGTSTFSQYTVLPEISCCVVREDAPLDKV
CLLGCGITTGFG---


Frame B:
ipnthnkik*aqkvkllhvkqqwlgkprnhw*lkilkfnhhkkvkselkfyilvfviqih
ih*vvviqkvffhvf*dmkvvvllrvlvkvlqvlklvim*flytfqnvehvnsvqatrli
fvqrfvslkvkvkcqmvpqdsnarvrksstlwaqalshntlfsqrlvvvslermhhwirf
vcwvvalplvsv---


Frame C:
fpthttk*nehrr*syym*sssglgsqetign*ry*sstttkr*sqn*nfiywclsyrfi
yikw**srryfsmyfrt*rwwyc*eyw*rcykc*sw*scnsfihsrmwnm*ilykqqd*s
lfkdsyhsr*rsnarwyhkiqmqg*gnlplyghkhfltihcsprd*llcr*rgctig*gl
fvglwhyhwfrc---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFM793 (VFM793Q) /CSM/VF/VFM7-D/VFM793Q.Seq.d/ 1148 0.0
VFM683 (VFM683Q) /CSM/VF/VFM6-D/VFM683Q.Seq.d/ 1148 0.0
VFL792 (VFL792Q) /CSM/VF/VFL7-D/VFL792Q.Seq.d/ 1148 0.0
VFK240 (VFK240Q) /CSM/VF/VFK2-B/VFK240Q.Seq.d/ 1148 0.0
VFB853 (VFB853Q) /CSM/VF/VFB8-C/VFB853Q.Seq.d/ 1148 0.0
VFA815 (VFA815Q) /CSM/VF/VFA8-A/VFA815Q.Seq.d/ 1148 0.0
SFK231 (SFK231Q) /CSM/SF/SFK2-B/SFK231Q.Seq.d/ 1148 0.0
CFJ137 (CFJ137Q) /CSM/CF/CFJ1-B/CFJ137Q.Seq.d/ 1148 0.0
CFF895 (CFF895Q) /CSM/CF/CFF8-D/CFF895Q.Seq.d/ 1148 0.0
CFC417 (CFC417Q) /CSM/CF/CFC4-A/CFC417Q.Seq.d/ 1148 0.0

own update 2001.12. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

M58332|M58332.1 C.maltosa formaldehyde resistance (fahR) gene, complete cds. 101 2e-33 4
AB085186|AB085186.1 Candida boidinii FLD1 gene for formaldehyde dehydrogenase, complete cds. 76 1e-26 5
AL436908|AL436908.1 T3 end of clone BC0AA006A09 of library BC0AA from strain CBS 767 of Debaryomyces hansenii. 46 3e-13 4
BE581286|BE581286.1 kq44g03.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to TR:Q17335 Q17335 ALCOHOL DEHYDROGENASE. ;, mRNA sequence. 52 3e-13 3
BI511523|BI511523.1 BB160006A10F10 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160006A10F10 5', mRNA sequence. 64 1e-08 2
CF115704|CF115704.1 SSFS063K12.z1 fs 103-105d fetal sheep skin library Ovis aries cDNA, mRNA sequence. 54 3e-08 3
AL396033|AL396033.1 T3 end of clone AR0AA027F12 of library AR0AA from strain CBS 732 of Zygosaccharomyces rouxii. 48 4e-08 3
C83608|C83608.1 Oryctolagus cuniculus corneal endothelial cDNA, clone 0904. 38 2e-06 3
AL969469|AL969469.1 Xenopus tropicalis EST, clone TGas086j24 5'. 52 2e-06 2
AL969854|AL969854.1 Xenopus tropicalis EST, clone TGas108k06 5'. 52 2e-06 2
dna update 2003. 8.18
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

DQ443122_1(DQ443122|pid:none) Bombyx mori alcohol dehydrogenase ... 266 2e-70
EF103440_1(EF103440|pid:none) Haliotis discus discus alcohol deh... 261 1e-68
JC7759(JC7759)alcohol dehydrogenase (EC 1.1.1.1) 3 - zebra fish 259 3e-68
AF399909_1(AF399909|pid:none) Danio rerio alcohol dehydrogenase ... 259 3e-68
AY393843_1(AY393843|pid:none) Xenopus laevis alcohol dehydrogena... 259 5e-68
AY512892_1(AY512892|pid:none) Oryzias latipes class III alcohol ... 258 1e-67
BC088898_1(BC088898|pid:none) Xenopus tropicalis hypothetical LO... 257 1e-67
BT075088_1(BT075088|pid:none) Osmerus mordax clone omor-rgc-512-... 257 1e-67
AF156705_1(AF156705|pid:none) Branchiostoma lanceolatum alcohol ... 257 2e-67
BT047946_1(BT047946|pid:none) Salmo salar clone ssal-rgb2-544-28... 257 2e-67
protein update 2009. 6.16
PSORT

psg: 0.70 gvh: 0.41 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for VFA815 is cyt

5' end seq. ID VFA815F
5' end seq.
>VFA815F.Seq
AATTCCCAACACACACAACAAAATAAAATGAGCACAGAAGGTAAAGTTATTACATGTAAA
GCAGCAGTGGCTTGGGAAGCCAAGAAACCATTGGTAATTGAAGATATTGAAGTTCAACCA
CCACAAAAAGGTGAAGTCAGAATTAAAATTTTATATACTGGTGTTTGTCATACAGATTCA
TATACATTAAGTGGTAGTGATCCAGAAGGTATTTTTCCATGTATTTTAGGACATGAAGGT
GGTGGTATTGTTGAGAGTATTGGTGAAGGTGTTACAAGTGTTAAAGTTGGTGATCATGTA
ATTCCTTTATACATTCCAGAATGTGGAACATGTAAATTCTGTACAAGCAACAAGACTAAT
CTTTGTTCAAAGATTCGTATCACTCAAGGTAAAGGTCAAATGCCAGATGGTACCACAAGA
TTCAAATGCAAGGGTAAGGAAATCTTCCACTTTATGGGCACAAGCACTTTCTCACAATAC
ACTGTTCTCCCAGAGATTAGTTGTTGTGTCGTTAGAGAGGATGCACCATTGGATAAGGTT
TGTTTGTTGGGTTGTGGCATTACCACTGGTTTCGGTGCC----------
Length of 5' end seq. 579
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -