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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
VFA784
Library VF
(Link to library)
Clone ID VFA784
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16239-1
Original site URL
Representative seq. ID VFA784P
(Link to Original site)
Representative DNA sequence 
>VFA784 (VFA784Q) /CSM/VF/VFA7-D/VFA784Q.Seq.d/
ACAATTGAATATGAAACTTTTACAGGTTACATTTTAGAGTTGACATCACAAACATGGATG
GCTGAAAAATCAGATTGGCCAGTTTGGAAACATTGGGTTTCAATTTGTGTACCAAAAGGT
GTTACAACTACAACTACATTTATATATGTTGATGGTGGTTCAAATGATAACTGGAAAGTA
CCAGGTTCAATGGATCAAACAATTGAAATTGTTTGTCTTTCATCTGGTTCAGTTAGTGTT
GGTTTAACTCAAATTCCAAATCAACCAATCATTTTCAATAATGATGGTGTTCAAAGATTT
GAAGATGATCTCGTTGCTTATACTTGGAGACAATTTTTAGGAAATACAAGTGAACCACTT
TGGTTAGCAAGATTACCAATGACTAAAGCTGTTGTTAAATGTATGGATGCAGTTCAAGAA
TTTGGTAAAACCATTGGTTACAATAGTGAAAACTTTGTTATTGCTGGTGCATCAAAGAGA
GGTTGGACAACTTGGCTTGCTGGTGTAGTTGATCCAAGAATTATTGCAATCGTTCCAATT
GTTATGCCAATTTTAAATATGATTCCAAATATGGGTCATCAATTTTATGCATATGGTGAA
XXXXXXXXXXTNTTTAATGGGTCATCAAATTGATATCATTTTATCGATTGTTACATTTGT
TAGATTATTAATTACAAATCAACCACGTCCAACTTTTACATGGGATATTACCTACTNTGA
ANATTTAAANAGTGGNACAATNGTTTTAACAGNACCANAAGGTGGNATCATTCCANACAA
AGTTAAAGTTTGGACAGCAGTAACTGAAAGNACAACCANAANANATTTCCGNATCATCAC
ATGNATGGATATCNCCNAATGNATTCAATTCATCATTTGGGATCCNTNTGATATTACNCC
AACTTCCNCTGGNGNATATTCAATCNCTTTATCAAAACCANATGCTGGTTGGANAGCNTT
NTTCCTTGAAGCTGAATATTTATATGCTAAAAATTC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
TIEYETFTGYILELTSQTWMAEKSDWPVWKHWVSICVPKGVTTTTTFIYVDGGSNDNWKV
PGSMDQTIEIVCLSSGSVSVGLTQIPNQPIIFNNDGVQRFEDDLVAYTWRQFLGNTSEPL
WLARLPMTKAVVKCMDAVQEFGKTIGYNSENFVIAGASKRGWTTWLAGVVDPRIIAIVPI
VMPILNMIPNMGHQFYAYGE---

---XLMGHQIDIILSIVTFVRLLITNQPRPTFTWDITYXEXLXSGTXVLTXPXGGIIPXK
VKVWTAVTEXTTXXXFRIITXMDIXXXIQFIIWDPXDITPTSXGXYSIXLSKPXAGWXAX
FLEAEYLYAKN
Translated Amino Acid sequence (All Frames) 
Frame A:
TIEYETFTGYILELTSQTWMAEKSDWPVWKHWVSICVPKGVTTTTTFIYVDGGSNDNWKV
PGSMDQTIEIVCLSSGSVSVGLTQIPNQPIIFNNDGVQRFEDDLVAYTWRQFLGNTSEPL
WLARLPMTKAVVKCMDAVQEFGKTIGYNSENFVIAGASKRGWTTWLAGVVDPRIIAIVPI
VMPILNMIPNMGHQFYAYGE---

---XLMGHQIDIILSIVTFVRLLITNQPRPTFTWDITYXEXLXSGTXVLTXPXGGIIPXK
VKVWTAVTEXTTXXXFRIITXMDIXXXIQFIIWDPXDITPTSXGXYSIXLSKPXAGWXAX
FLEAEYLYAKN

Frame B:
qlnmkllqvtf*s*hhkhgwlknqigqfgnigfqfvyqkvlqlqlhlymlmvvqmitgky
qvqwikqlklfvfhlvqlvlv*lkfqinqsfsimmvfkdlkmisllilgdnf*eiqvnhf
g*qdyq*lklllnvwmqfknlvkplvtivktllllvhqrevgqlgllv*liqellqsfql
lcqf*i*fqiwvinfmhmv---

---x*wviklisfyrllhlldy*lqinhvqllhgilptxxi*xvxqxf*qxxkvxsfxtk
lkfgqq*lkxqpxxisxsshxwispnxfnssfgixxilxqlplxxiqslyqnxmlvgxxx
slklniymlki

Frame C:
n*i*nfyrlhfrvditnmdg*kirlasletlgfnlctkrcynynyiyic*wwfk**lest
rfngsnn*nclsfiwfs*cwfnsnskstnhfq**wcski*r*srclyletifrkyk*ttl
vskitnd*scc*mygcssriw*nhwlq**klcycwcikerldnlacwcs*sknycnrsnc
yanfkydskygssilciw*---

---fngssn*yhfidcyic*iinyksttsnfymgyyll*xfkxwxnxfnxtxrwxhsxqs
*sldssn*kxnxxxfpxhhmxgyxxmxsihhlgsx*yyxnfxwxifnxfiktxcwlxsxx
p*s*ific*kf
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFA784 (VFA784Q) /CSM/VF/VFA7-D/VFA784Q.Seq.d/                       1737   0.0
VFG794 (VFG794Q) /CSM/VF/VFG7-D/VFG794Q.Seq.d/                       1179   0.0
VFF310 (VFF310Q) /CSM/VF/VFF3-A/VFF310Q.Seq.d/                       1152   0.0
SSD213 (SSD213Q) /CSM/SS/SSD2-A/SSD213Q.Seq.d/                       1055   0.0
VFN176 (VFN176Q) /CSM/VF/VFN1-D/VFN176Q.Seq.d/                       1025   0.0
VFB611 (VFB611Q) /CSM/VF/VFB6-A/VFB611Q.Seq.d/                        967   0.0
VFE314 (VFE314Q) /CSM/VF/VFE3-A/VFE314Q.Seq.d/                        952   0.0
VFF638 (VFF638Q) /CSM/VF/VFF6-B/VFF638Q.Seq.d/                        948   0.0
VFL320 (VFL320Q) /CSM/VF/VFL3-A/VFL320Q.Seq.d/                        946   0.0
VFE568 (VFE568Q) /CSM/VF/VFE5-C/VFE568Q.Seq.d/                        946   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    42  2e-05  4
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.    54  1e-04  4
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    42  1.2  4
BU753618|BU753618.1 UI-1-BB1p-ajw-b-06-0-UI.s1 NCI_CGAP_Pl6 Homo sapiens cDNA clone UI-1-BB1p-ajw-b-06-0-UI 3', mRNA sequence.    30  2.3  3
AC128650|AC128650.6 Homo sapiens 3 BAC RP11-373L8 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    46  2.3  4
AL606748|AL606748.9 Human DNA sequence from clone RP13-43E11 on chromosome Xp21.1-21.3.    42  2.4  3
AC136006|AC136006.5 Homo sapiens BAC clone RP11-588M17 from 2, complete sequence.    38  3.0  2
AL627412|AL627412.1 Homo sapiens chromosome X clone cosE75M32 map Xp21.1, ***SEQUENCING  IN PROGRESS ***, 3 unordered pieces.    42  3.2  3
BH399093|BH399093.1 AG-ND-166O9.TF ND-TAM Anopheles gambiae genomic clone AG-ND-166O9, DNA sequence.    44  3.3  1
AV229047|AV229047.1 Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4631404A05, 3' end partial sequence.    44  3.3  1
dna update 2003. 8.19
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5XM24) RecName: Full=Autocrine proliferation repressor; AltNam...   401   e-110
AC116987_4(AC116987|pid:none) Dictyostelium discoideum chromosom...   182   1e-44
CP000473_2389(CP000473|pid:none) Solibacter usitatus Ellin6076, ...   145   3e-33
CP000771_1644(CP000771|pid:none) Fervidobacterium nodosum Rt17-B...   107   8e-22
CP000127_1294(CP000127|pid:none) Nitrosococcus oceani ATCC 19707...   103   7e-21
AM286415_3673(AM286415|pid:none) Yersinia enterocolitica subsp. ...    96   3e-18
CP000969_1800(CP000969|pid:none) Thermotoga sp. RQ2, complete ge...    94   6e-18
CP000967_3137(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P...    94   6e-18
AE008923_3072(AE008923|pid:none) Xanthomonas axonopodis pv. citr...    94   6e-18
AE013598_1709(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K...    94   6e-18
protein update 2009. 6.16
PSORT 

 psg: 0.75  gvh: 0.39  alm: 0.29  top: 0.40  tms: 0.13  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: endoplasmic reticulum
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  8.0 %: extracellular, including cell wall
	  4.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for VFA784 is end
5' end seq. ID VFA784F
5' end seq. 
>VFA784F.Seq
ACAATTGAATATGAAACTTTTACAGGTTACATTTTAGAGTTGACATCACAAACATGGATG
GCTGAAAAATCAGATTGGCCAGTTTGGAAACATTGGGTTTCAATTTGTGTACCAAAAGGT
GTTACAACTACAACTACATTTATATATGTTGATGGTGGTTCAAATGATAACTGGAAAGTA
CCAGGTTCAATGGATCAAACAATTGAAATTGTTTGTCTTTCATCTGGTTCAGTTAGTGTT
GGTTTAACTCAAATTCCAAATCAACCAATCATTTTCAATAATGATGGTGTTCAAAGATTT
GAAGATGATCTCGTTGCTTATACTTGGAGACAATTTTTAGGAAATACAAGTGAACCACTT
TGGTTAGCAAGATTACCAATGACTAAAGCTGTTGTTAAATGTATGGATGCAGTTCAAGAA
TTTGGTAAAACCATTGGTTACAATAGTGAAAACTTTGTTATTGCTGGTGCATCAAAGAGA
GGTTGGACAACTTGGCTTGCTGGTGTAGTTGATCCAAGAATTATTGCAATCGTTCCAATT
GTTATGCCAATTTTAAATATGATTCCAAATATGGGTCATCAATTTTATGCATATGGTGAA
----------
Length of 5' end seq. 600
3' end seq. ID VFA784Z
3' end seq. 
>VFA784Z.Seq
----------TNTTTAATGGGTCATCAAATTGATATCATTTTATCGATTGTTACATTTGT
TAGATTATTAATTACAAATCAACCACGTCCAACTTTTACATGGGATATTACCTACTNTGA
ANATTTAAANAGTGGNACAATNGTTTTAACAGNACCANAAGGTGGNATCATTCCANACAA
AGTTAAAGTTTGGACAGCAGTAACTGAAAGNACAACCANAANANATTTCCGNATCATCAC
ATGNATGGATATCNCCNAATGNATTCAATTCATCATTTGGGATCCNTNTGATATTACNCC
AACTTCCNCTGGNGNATATTCAATCNCTTTATCAAAACCANATGCTGGTTGGANAGCNTT
NTTCCTTGAAGCTGAATATTTATATGCTAAAAATTC
Length of 3' end seq. 386
Connected seq. ID VFA784P
Connected seq. 
>VFA784P.Seq
ACAATTGAATATGAAACTTTTACAGGTTACATTTTAGAGTTGACATCACAAACATGGATG
GCTGAAAAATCAGATTGGCCAGTTTGGAAACATTGGGTTTCAATTTGTGTACCAAAAGGT
GTTACAACTACAACTACATTTATATATGTTGATGGTGGTTCAAATGATAACTGGAAAGTA
CCAGGTTCAATGGATCAAACAATTGAAATTGTTTGTCTTTCATCTGGTTCAGTTAGTGTT
GGTTTAACTCAAATTCCAAATCAACCAATCATTTTCAATAATGATGGTGTTCAAAGATTT
GAAGATGATCTCGTTGCTTATACTTGGAGACAATTTTTAGGAAATACAAGTGAACCACTT
TGGTTAGCAAGATTACCAATGACTAAAGCTGTTGTTAAATGTATGGATGCAGTTCAAGAA
TTTGGTAAAACCATTGGTTACAATAGTGAAAACTTTGTTATTGCTGGTGCATCAAAGAGA
GGTTGGACAACTTGGCTTGCTGGTGTAGTTGATCCAAGAATTATTGCAATCGTTCCAATT
GTTATGCCAATTTTAAATATGATTCCAAATATGGGTCATCAATTTTATGCATATGGTGAA
----------TNTTTAATGGGTCATCAAATTGATATCATTTTATCGATTGTTACATTTGT
TAGATTATTAATTACAAATCAACCACGTCCAACTTTTACATGGGATATTACCTACTNTGA
ANATTTAAANAGTGGNACAATNGTTTTAACAGNACCANAAGGTGGNATCATTCCANACAA
AGTTAAAGTTTGGACAGCAGTAACTGAAAGNACAACCANAANANATTTCCGNATCATCAC
ATGNATGGATATCNCCNAATGNATTCAATTCATCATTTGGGATCCNTNTGATATTACNCC
AACTTCCNCTGGNGNATATTCAATCNCTTTATCAAAACCANATGCTGGTTGGANAGCNTT
NTTCCTTGAAGCTGAATATTTATATGCTAAAAATTC
Length of connected seq. 986
Full length Seq ID -
Full length Seq. -
Length of full length seq. -