AFM134
Library AF
(Link to library)
Clone ID AFM134
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM134P
(Link to Original site)
Representative DNA sequence
>AFM134 (AFM134Q) /CSM/AF/AFM1-B/AFM134Q.Seq.d/
AATTTTATTTTTAATCAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAAAATA
AAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATTCCTT
GTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTCATAAA
TCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGCTTGC
TCTAAAGGTACATTTGATACTTGTGCATATGAAAATAGTTGTTATAGAAATTCATCCAAT
AACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAATTACA
ACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTAAA
TCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGAATCA
ATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCATCAGXXXXXXXX
XXCGGTAGTTCATCANCAGGTACATCAGGTGGTCATCCAGATCCATGTAGAGATGTTTAC
TGTCCAGATGGTTTCCATTGTGAATGTAAAGATGGTAAAACTGCTAAATGTGTTCCAAGT
CCAACAACCGGTTCATCAAATACATCAGGTGGTCATCCAGATCCATGTAAAGATGTAACT
TGTCCAGATGGTTTCCATTGTGAATGTAAAGATGGTAAAACTGCTAAATGTGTTCCAAGT
CCAACAACCGGTTCATCAAGTACATCAGGTGGTAACACTAACCCATGTTCAAATGTAAAT
TGTCCAGATGGTTTCTATTGTGAATGTAAAGATGGTAAAACTGCTAAATGTGTTCCAAGT
GGTCCAACTCAACCACCAAAACCACCAGTTTGCTCTTTAAGATGTCCACCAAATCATGAA
TGTAGATTTAATGACCAAGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTTCA
TTAAGATGTCCACATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCGTC
AGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAA
TGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGT
GATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGAGGTTCAAAATGTTGTG
TCCGTTCAGAAAGACCACACCCACCACAACA
sequence update 2009. 4. 3
Translated Amino Acid sequence
nfifnqfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEECHK
SSECIVINYTPCCGEQKWACSKGTFDTCAYENSCYRNSSNNQVVEVSNKCFNLDGFIKIT
TPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCCPGESICEGLSSGSSTSGGGSS---

---GSSSXGTSGGHPDPCRDVYCPDGFHCECKDGKTAKCVPSPTTGSSNTSGGHPDPCKD
VTCPDGFHCECKDGKTAKCVPSPTTGSSSTSGGNTNPCSNVNCPDGFYCECKDGKTAKCV
PSGPTQPPKPPVCSLRCPPNHECRFNDQGHQCCVKVHHDRCSLRCPHGHECKVDHNGKEC
CVRSHRPPPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHEVQN
VVSVQKDHTHHN


Translated Amino Acid sequence (All Frames)
Frame A:
nfifnqfklkkkq*ltklkikk**RMLFLKNIGVFFMIFLVSKSYATDCNKITNEEECHK
SSECIVINYTPCCGEQKWACSKGTFDTCAYENSCYRNSSNNQVVEVSNKCFNLDGFIKIT
TPTEYSCSDAKIKECALLGKSCSFQKNSCSNPTSCCPGESICEGLSSGSSTSGGGSS---

---r*fixryirwssrsm*rcllsrwfpl*m*rw*nc*mcsksnnrfikyirwssrsm*r
cnlsrwfpl*m*rw*nc*mcsksnnrfikyirw*h*pmfkcklsrwfll*m*rw*nc*mc
skwsnsttkttsllfkmstks*m*i**prssmlckgsp**mfikmstwp*m*s*sqw*rm
lrqip*ttttrslfikmptkt*m*i**sw*kmlckdsl**sl*frlw*rf*m*n*t*gsk
ccvrserphppq

Frame B:
ilflinsn*kknnn*ls*k*knnkgccf*kileyfl*yslyqnpmrrivikllmkknvin
lrnvll*iihhvvvnknglalkvhlilvhmkivvieihpitkllkyqinasilmdllklq
lqpsilvlmprlknvpy*vnhvvskrtlvqiqlpvaqvnqfvkv*alvvqhlvvvhq---

---GSSSXGTSGGHPDPCRDVYCPDGFHCECKDGKTAKCVPSPTTGSSNTSGGHPDPCKD
VTCPDGFHCECKDGKTAKCVPSPTTGSSSTSGGNTNPCSNVNCPDGFYCECKDGKTAKCV
PSGPTQPPKPPVCSLRCPPNHECRFNDQGHQCCVKVHHDRCSLRCPHGHECKVDHNGKEC
CVRSHRPPPPEVCSLRCPPKHECKFDDHGKKCCVKIHCDEVCDLDCGRGFECKIRHEVQN
VVSVQKDHTHHN

Frame C:
fyf*siqikkktitn*vknkkiikdvvskkywsifydipcikilcdgl**ny**rrms*i
fgmycyklytmlw*tkmgll*ryi*ylci*k*ll*kfiq*psc*sik*mlqs*wiy*nyn
snrvflf*cqd*rmclir*im*fpkellfksnfllpr*inl*rfklw*fniwwwfi---

---vvhxqvhqvviqihvemftvqmvsivnvkmvkllnvfqvqqpvhqihqvviqihvkm
*lvqmvsivnvkmvkllnvfqvqqpvhqvhqvvtlthvqm*ivqmvsivnvkmvkllnvf
qvvqlnhqnhqfal*dvhqimnvdlmtkvinav*rftmidvh*dvhmamnvklitmvknv
asdpidhhhqkfvh*dahqnmnvnlmimvknvv*rfivmkfvi*ivvevlnvkldmrfkm
lcpfrkttpttt

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFM134 (AFM134Q) /CSM/AF/AFM1-B/AFM134Q.Seq.d/ 2363 0.0
AFM730 (AFM730Q) /CSM/AF/AFM7-B/AFM730Q.Seq.d/ 1455 0.0
AFN472 (AFN472Q) /CSM/AF/AFN4-C/AFN472Q.Seq.d/ 1453 0.0
SFG248 (SFG248Q) /CSM/SF/SFG2-B/SFG248Q.Seq.d/ 1431 0.0
SFJ257 (SFJ257Q) /CSM/SF/SFJ2-C/SFJ257Q.Seq.d/ 1423 0.0
CFA629 (CFA629Q) /CSM/CF/CFA6-B/CFA629Q.Seq.d/ 1402 0.0
AFB837 (AFB837Q) /CSM/AF/AFB8-B/AFB837Q.Seq.d/ 1364 0.0
AFF139 (AFF139Q) /CSM/AF/AFF1-B/AFF139Q.Seq.d/ 1346 0.0
CHI566 (CHI566Q) /CSM/CH/CHI5-C/CHI566Q.Seq.d/ 1273 0.0
SFI632 (SFI632Q) /CSM/SF/SFI6-B/SFI632Q.Seq.d/ 1271 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ346846) Dictyostelium discoideum cDNA clone:dda25c09, 3' ... 1479 0.0 1
(BJ347199) Dictyostelium discoideum cDNA clone:dda26l07, 3' ... 1455 0.0 1
(BJ347645) Dictyostelium discoideum cDNA clone:dda27p18, 3' ... 1453 0.0 1
(U25144) Dictyostelium discoideum spore coat protein SP87 (P... 1370 0.0 2
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255... 1370 0.0 2
(BJ400482) Dictyostelium discoideum cDNA clone:dds13o12, 3' ... 1356 0.0 2
(BJ401815) Dictyostelium discoideum cDNA clone:dds19a16, 3' ... 1344 0.0 2
(BJ402843) Dictyostelium discoideum cDNA clone:dds18o08, 3' ... 1271 0.0 1
(BJ323617) Dictyostelium discoideum cDNA clone:dda11m09, 5' ... 1267 0.0 2
(BJ340910) Dictyostelium discoideum cDNA clone:dda4j10, 3' e... 1263 0.0 4
dna update 2009. 4. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC117267_7(AC117267|pid:none) Dictyostelium discoideum chromosom... 531 e-154
(P15270) RecName: Full=Spore coat protein SP60; Flags: Precursor... 179 1e-43
(Q6TU45) RecName: Full=Probable spore coat protein sigD; AltName... 124 7e-27
X52105_1(X52105|pid:none) Dictyostelium discoideum SP60 gene for... 112 8e-24
(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 110 8e-23
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 104 7e-21
(Q54QX2) RecName: Full=Probable spore coat protein DDB_G0283555;... 87 9e-16
S07638(S07638;A60942;B60942) spore coat protein SP96 precursor -... 65 7e-09
(P14328) RecName: Full=Spore coat protein SP96; &AC117075_49(AC... 65 7e-09
(P54704) RecName: Full=Spore coat protein SP85; AltName: Full=Ce... 58 8e-07
protein update 2009. 4. 4
PSORT

psg: 0.00 gvh: 0.00 alm: 0.00 top: 0.00 tms: 0.00 mit: 0.00 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

100.0 %:

>> prediction for AFM134 is

5' end seq. ID AFM134F
5' end seq.
>AFM134F.Seq
AATTTTATTTTTAATCAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAAAATA
AAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATTCCTT
GTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTCATAAA
TCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGCTTGC
TCTAAAGGTACATTTGATACTTGTGCATATGAAAATAGTTGTTATAGAAATTCATCCAAT
AACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAATTACA
ACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTAAA
TCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGAATCA
ATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCATCAGXXXXXXXX
XX
Length of 5' end seq. 542
3' end seq. ID AFM134Z
3' end seq.
>AFM134Z.Seq
XXXXXXXXXXCGGTAGTTCATCANCAGGTACATCAGGTGGTCATCCAGATCCATGTAGAG
ATGTTTACTGTCCAGATGGTTTCCATTGTGAATGTAAAGATGGTAAAACTGCTAAATGTG
TTCCAAGTCCAACAACCGGTTCATCAAATACATCAGGTGGTCATCCAGATCCATGTAAAG
ATGTAACTTGTCCAGATGGTTTCCATTGTGAATGTAAAGATGGTAAAACTGCTAAATGTG
TTCCAAGTCCAACAACCGGTTCATCAAGTACATCAGGTGGTAACACTAACCCATGTTCAA
ATGTAAATTGTCCAGATGGTTTCTATTGTGAATGTAAAGATGGTAAAACTGCTAAATGTG
TTCCAAGTGGTCCAACTCAACCACCAAAACCACCAGTTTGCTCTTTAAGATGTCCACCAA
ATCATGAATGTAGATTTAATGACCAAGGTCATCAATGCTGTGTAAAGGTTCACCATGATA
GATGTTCATTAAGATGTCCACATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAAT
GTTGCGTCAGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAA
AACATGAATGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATG
AAGTTTGTGATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGAGGTTCAAA
ATGTTGTGTCCGTTCAGAAAGACCACACCCACCACAACA
Length of 3' end seq. 759
Connected seq. ID AFM134P
Connected seq.
>AFM134P.Seq
AATTTTATTTTTAATCAATTCAAATTAAAAAAAAAACAATAACTAACTAAGTTAAAAATA
AAAAAATAATAAAGGATGTTGTTTCTAAAAAATATTGGAGTATTTTTTATGATATTCCTT
GTATCAAAATCCTATGCGACGGATTGTAATAAAATTACTAATGAAGAAGAATGTCATAAA
TCTTCGGAATGTATTGTTATAAATTATACACCATGTTGTGGTGAACAAAAATGGGCTTGC
TCTAAAGGTACATTTGATACTTGTGCATATGAAAATAGTTGTTATAGAAATTCATCCAAT
AACCAAGTTGTTGAAGTATCAAATAAATGCTTCAATCTTGATGGATTTATTAAAATTACA
ACTCCAACCGAGTATTCTTGTTCTGATGCCAAGATTAAAGAATGTGCCTTATTAGGTAAA
TCATGTAGTTTCCAAAAGAACTCTTGTTCAAATCCAACTTCCTGTTGCCCAGGTGAATCA
ATTTGTGAAGGTTTAAGCTCTGGTAGTTCAACATCTGGTGGTGGTTCATCAG--------
--CGGTAGTTCATCANCAGGTACATCAGGTGGTCATCCAGATCCATGTAGAGATGTTTAC
TGTCCAGATGGTTTCCATTGTGAATGTAAAGATGGTAAAACTGCTAAATGTGTTCCAAGT
CCAACAACCGGTTCATCAAATACATCAGGTGGTCATCCAGATCCATGTAAAGATGTAACT
TGTCCAGATGGTTTCCATTGTGAATGTAAAGATGGTAAAACTGCTAAATGTGTTCCAAGT
CCAACAACCGGTTCATCAAGTACATCAGGTGGTAACACTAACCCATGTTCAAATGTAAAT
TGTCCAGATGGTTTCTATTGTGAATGTAAAGATGGTAAAACTGCTAAATGTGTTCCAAGT
GGTCCAACTCAACCACCAAAACCACCAGTTTGCTCTTTAAGATGTCCACCAAATCATGAA
TGTAGATTTAATGACCAAGGTCATCAATGCTGTGTAAAGGTTCACCATGATAGATGTTCA
TTAAGATGTCCACATGGCCATGAATGTAAAGTTGATCACAATGGTAAAGAATGTTGCGTC
AGATCCCATAGACCACCACCACCAGAAGTTTGTTCATTAAGATGCCCACCAAAACATGAA
TGTAAATTTGATGATCATGGTAAAAAATGTTGTGTAAAGATTCATTGTGATGAAGTTTGT
GATTTAGATTGTGGTAGAGGTTTTGAATGTAAAATTAGACATGAGGTTCAAAATGTTGTG
TCCGTTCAGAAAGACCACACCCACCACAACA
Length of connected seq. 1281
Full length Seq ID -
Full length Seq. -
Length of full length seq. -