VFA762
Library VF
(Link to library)
Clone ID VFA762
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14931-1
Original site URL
Representative seq. ID VFA762Z
(Link to Original site)
Representative DNA sequence
>VFA762 (VFA762Q) /CSM/VF/VFA7-C/VFA762Q.Seq.d/
XXXXXXXXXXATCATTGGTGGTGGTATGGCCNTCACTTTCAAGAAATTCATTGATAACAA
AGAGATTGGTTCATCATTGTTTGAGAAAACAGCCGAACAAATCACCAAAGATATCATTGC
CAAAGGCCGCTAAAAATAATGTAAAATTACATTTCCCAGTCGATTATGTCATTGCCGATA
AATTTGATAATGATGCCAACATCAAANCCGTCACTCAAGATCAAGGTATCCCAGAAGGTT
GGATGGGTTTAGATTGTGGTCCAGAGACTATCAAAGAAAACAGAGATACCATCTCAAGAG
CAAAAACCATCGTTTGGAATGGTCCTATGGGTGTATTTGAAAAGAGCAATTTCGAAGCCG
GTACAAAAGCTGCCATGGATGATGTTGTCAATGCCACAACCAATGGTGCTATCACTATCA
TTGGTGGTGGTGATACCGCCACTTGTGCTGCCAAATACAACACTGAAGATAAAGTTAGTC
ATGTCTCANCTGGTGGTGGTGCTTCATTAGAACTATTAGAAGGTANAGAATCCCAGGTGN
TA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---SLVVVWPSLSRNSLITKRLVHHCLRKQPNKSPKISLPKAAKNNVKLHFPVDYVIADK
FDNDANIKXVTQDQGIPEGWMGLDCGPETIKENRDTISRAKTIVWNGPMGVFEKSNFEAG
TKAAMDDVVNATTNGAITIIGGGDTATCAAKYNTEDKVSHVSXGGGASLELLEGXESQVX


Translated Amino Acid sequence (All Frames)
Frame A:
---SLVVVWPSLSRNSLITKRLVHHCLRKQPNKSPKISLPKAAKNNVKLHFPVDYVIADK
FDNDANIKXVTQDQGIPEGWMGLDCGPETIKENRDTISRAKTIVWNGPMGVFEKSNFEAG
TKAAMDDVVNATTNGAITIIGGGDTATCAAKYNTEDKVSHVSXGGGASLELLEGXESQVX


Frame B:
---hwwwygxhfqeih**qrdwfiiv*ensrtnhqryhcqrplkim*nyisqsimslpin
limmptsxpslkikvsqkvgwv*ivvqrlskkteipsqeqkpsfgmvlwvylkraiskpv
qklpwmmlsmpqpmvlslslvvvipplvlpnttlkiklvmsxlvvvlh*ny*kvxnprx


Frame C:
---igggmaxtfkkfidnkeigsslfektaeqitkdiiakgr*k*ckitfpsrlchcr*i
***cqhqxrhsrsryprrldgfrlwsrdyqrkqryhlksknhrlewsygci*keqfrsry
kschg*ccqchnqwcyhyhwww*yrhlccqiqh*r*s*sclxwwwcfirtirrxripgx


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFA762 (VFA762Q) /CSM/VF/VFA7-C/VFA762Q.Seq.d/ 1025 0.0
VSD369 (VSD369Q) /CSM/VS/VSD3-C/VSD369Q.Seq.d/ 985 0.0
VHD789 (VHD789Q) /CSM/VH/VHD7-D/VHD789Q.Seq.d/ 985 0.0
VFO594 (VFO594Q) /CSM/VF/VFO5-D/VFO594Q.Seq.d/ 985 0.0
VFN471 (VFN471Q) /CSM/VF/VFN4-C/VFN471Q.Seq.d/ 985 0.0
VFL772 (VFL772Q) /CSM/VF/VFL7-C/VFL772Q.Seq.d/ 985 0.0
VFL140 (VFL140Q) /CSM/VF/VFL1-B/VFL140Q.Seq.d/ 985 0.0
VFK529 (VFK529Q) /CSM/VF/VFK5-B/VFK529Q.Seq.d/ 985 0.0
VFK253 (VFK253Q) /CSM/VF/VFK2-C/VFK253Q.Seq.d/ 985 0.0
VFK166 (VFK166Q) /CSM/VF/VFK1-C/VFK166Q.Seq.d/ 985 0.0

own update 2004. 8.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF018637|AF018637.1 Dictyostelium discoideum phosphoglycerate kinase (pgkA) mRNA, partial cds. 779 0.0 2
AF316577|AF316577.2 Dictyostelium discoideum phosphoglycerate kinase (pgkA) mRNA, complete cds. 779 0.0 2
AX488918|AX488918.1 Sequence 6218 from Patent WO02053728. 58 6e-24 4
U25180|U25180.1 Candida albicans phosphoglycerate kinase (PGK1) gene, complete cds. 58 2e-23 4
D12474|D12474.1 Candida maltosa C-PGK1 gene for phosphoglycerate kinase, complete cds. 54 2e-18 4
L36833|L36833.1 Schistosoma mansoni (clone C5-1B3) phosphoglycerate kinase (PGK) gene, complete cds. 50 4e-14 4
BU776741|BU776741.1 SJEDCC02 SJE Schistosoma japonicum cDNA, mRNA sequence. 58 6e-14 3
BU766685|BU766685.1 SJEAIG07 SJE Schistosoma japonicum cDNA, mRNA sequence. 58 7e-14 3
BU771972|BU771972.1 SJEELA04 SJE Schistosoma japonicum cDNA, mRNA sequence. 58 9e-14 3
BU724812|BU724812.1 SJMBLB01 SJM Schistosoma japonicum cDNA, mRNA sequence. 58 1e-13 3
dna update 2003. 8.19
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q9GPM4) RecName: Full=Phosphoglycerate kinase; EC=2.7.... 203 2e-51
AF018637_1(AF018637|pid:none) Dictyostelium discoideum phosphogl... 203 2e-51
BC083568_1(BC083568|pid:none) Rattus norvegicus phosphoglycerate... 133 3e-30
(P14228) RecName: Full=Phosphoglycerate kinase; EC=2.7.... 120 3e-30
FN315993_1(FN315993|pid:none) Schistosoma japonicum isolate Anhu... 133 3e-30
AY309061_1(AY309061|pid:none) Schistosoma japonicum phosphoglyce... 133 3e-30
FN315990_1(FN315990|pid:none) Schistosoma japonicum isolate Anhu... 133 3e-30
EZ000104_1(EZ000104|pid:none) TSA: Schistosoma japonicum SJCHGC0... 133 3e-30
AY223444_1(AY223444|pid:none) Schistosoma japonicum clone ZZZ452... 133 3e-30
FN322120_1(FN322120|pid:none) Schistosoma japonicum isolate Anhu... 133 3e-30
protein update 2009. 6.16
PSORT

psg: 0.59 gvh: 0.36 alm: 0.49 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: mitochondrial
20.0 %: nuclear
12.0 %: cytoplasmic
8.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for VFA762 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID VFA762Z
3' end seq.
>VFA762Z.Seq
----------ATCATTGGTGGTGGTATGGCCNTCACTTTCAAGAAATTCATTGATAACAA
AGAGATTGGTTCATCATTGTTTGAGAAAACAGCCGAACAAATCACCAAAGATATCATTGC
CAAAGGCCGCTAAAAATAATGTAAAATTACATTTCCCAGTCGATTATGTCATTGCCGATA
AATTTGATAATGATGCCAACATCAAANCCGTCACTCAAGATCAAGGTATCCCAGAAGGTT
GGATGGGTTTAGATTGTGGTCCAGAGACTATCAAAGAAAACAGAGATACCATCTCAAGAG
CAAAAACCATCGTTTGGAATGGTCCTATGGGTGTATTTGAAAAGAGCAATTTCGAAGCCG
GTACAAAAGCTGCCATGGATGATGTTGTCAATGCCACAACCAATGGTGCTATCACTATCA
TTGGTGGTGGTGATACCGCCACTTGTGCTGCCAAATACAACACTGAAGATAAAGTTAGTC
ATGTCTCANCTGGTGGTGGTGCTTCATTAGAACTATTAGAAGGTANAGAATCCCAGGTGN
TA
Length of 3' end seq. 532
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -