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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
AFM133
Library AF
(Link to library)
Clone ID AFM133
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID AFM133P
(Link to Original site)
Representative DNA sequence 
>AFM133 (AFM133Q) /CSM/AF/AFM1-B/AFM133Q.Seq.d/
AAAACATCTCTATTTTATTATATAAAAGCTACACATTGTAAATCCAAAATTTCATTACCT
TTCAAAATGGAAAACCCATTCAATTCCAATACTTATAATAATAATTATAATAATACTAAT
TATAATAATAATAATAATTATTATTATAATAATAATAATAATTATAGTAATAATTATTAT
AATAATAATTATAATAATAATAATTTGAATAATAATTATACCAGTTGTAGTAATCATCTC
AACCTAACTCCTGAAGAATCTATGATTGATCAACCAAAGGAAAAAGAACAACCTATGCCT
TTCTCTGCACAAGACAGAACTTTGGCAGTTACTACACCGTCCAATCTAGCAATAGAATCT
CAAGTTACCGATCTGTTGAGAGAGGATGAGGAACCATCTGCTGATGCATCGCCAGCTACT
ACCTTTTCCATACAATTAATCGCCAAAGGAGGGCATGTTATTTACCTTAACCATCCAAAT
GCTCAAGTAGCTACTCTCAAGGTTCAACTACCTGATACCGCACCATCCACTTTAGAATTA
CCATTACAAATAACTCCAGCAATAGACGTAAAGCAACTTGCAATATCGACCCATGATTAC
CAAAAAAATCGGGTGAAGGTATGCGTACXXXXXXXXXXGCGGTATAGAACTAGATACAGA
GAAATTGATTACAGATATCGTATCAGGGTTCCATTTAGTAGGCATGCAGCCTTCTTCGGA
AATGATCAATAGTTGGCGTCCTTTTTTAAGAGACTTCTCTACTACACTCTCCAATATGAC
TCTGGACTTAAAGGATACCCCTTCTCCGATGTCAATTAATTCTTATGATCCAGGTAACTA
TCGCAGTACCTTTGAGCGAATAGCGAGTCATGCTACTAATAGAAGAATTACCCTCACACG
ATATGGGGCAGCCTACTTGCATATCGTGAGCCAAATAAGAACAAAGATCAAACAACAGCA
AAGCCTTCCCATTGACCCAGTTGAGTATCCTTCCCATAGCTATACGGTAAGCTTACAACC
CAACTTATTGCATATGCTACCCTTGGTGGCCTCGCTGAATCATCTCTATGCTACGCCCAT
AGGAGGAGAATTTACCTTTGATGTAGGTAGTTTAATGCAGATAGCCCAGGTCGCTGTATG
CTTTCATCCTGCTTTTTTAAATTTTGAAAATTCTAAAAGAATTACTTCTACTGGCATCAA
CCTAGATGATTTACTCACTGCTGCTTTACAAGAAACCACTTTGCAAGAGACTGCAAGAAA
GCAAAGGNATCAACA
sequence update 2009. 4. 3
Translated Amino Acid sequence 
KTSLFYYIKATHCKSKISLPFKMENPFNSNTYNNNYNNTNYNNNNNYYYNNNNNYSNNYY
NNNYNNNNLNNNYTSCSNHLNLTPEESMIDQPKEKEQPMPFSAQDRTLAVTTPSNLAIES
QVTDLLREDEEPSADASPATTFSIQLIAKGGHVIYLNHPNAQVATLKVQLPDTAPSTLEL
PLQITPAIDVKQLAISTHDYQKNRVKVCV---

---GIELDTEKLITDIVSGFHLVGMQPSSEMINSWRPFLRDFSTTLSNMTLDLKDTPSPM
SINSYDPGNYRSTFERIASHATNRRITLTRYGAAYLHIVSQIRTKIKQQQSLPIDPVEYP
SHSYTVSLQPNLLHMLPLVASLNHLYATPIGGEFTFDVGSLMQIAQVAVCFHPAFLNFEN
SKRITSTGINLDDLLTAALQETTLQETARKQRXQ
Translated Amino Acid sequence (All Frames) 
Frame A:
KTSLFYYIKATHCKSKISLPFKMENPFNSNTYNNNYNNTNYNNNNNYYYNNNNNYSNNYY
NNNYNNNNLNNNYTSCSNHLNLTPEESMIDQPKEKEQPMPFSAQDRTLAVTTPSNLAIES
QVTDLLREDEEPSADASPATTFSIQLIAKGGHVIYLNHPNAQVATLKVQLPDTAPSTLEL
PLQITPAIDVKQLAISTHDYQKNRVKVCV---

---av*n*iqrn*lqisyqgsi**acsllrk*sivgvlf*etsllhspi*lwt*ripllr
cqlilmiqvtiavplse*rvmllieelpshdmgqptcis*ak*eqrsnnskafpltqlsi
lpiair*aynptycicypwwpr*iismlrp*eenlplm*vv*cr*prslyafillf*ilk
ilkellllast*miyslllykkplckrlqeskgin

Frame B:
khlyfii*klhivnpkfhylskwkthsipiliiiiiiiliiiiiiiiiiiiiiiiviiii
iiiiiiii*iiiipvvviist*llknl*linqrkknnlclslhktelwqllhrpi*q*nl
klpic*ermrnhllmhrqllpfpyn*spkegmlftltiqmlk*llsrfnyliphhpl*ny
hyk*lqq*t*snlqyrpmitkkig*ryay---

---ryrtryreidyryrirvpfsrhaaffgndq*lasffkrllyytlqydsglkgypfsd
vn*fl*sr*lsqyl*ansescy**knyphtiwgsllayrepnknkdqttakpsh*ps*vs
fp*lygklttqliayatlgglaesslcyahrrriyl*cr*fnadspgrcmlsscffkf*k
f*knyfywhqpr*fthccftrnhfardckkakxst

Frame C:
nisillyksytl*iqnfitfqngkpiqfqyl***l**y*l*****lll*****l***ll*
**l****fe**lyql**ssqpns*riyd*stkgkrttyaflctrqnfgsyytvqssnris
syrsverg*gtic*ciasyylfhtinrqrracylp*pskcsssysqgstt*yrtihfrit
itnnssnrrkatcnidp*lpkksgegmr---

---GIELDTEKLITDIVSGFHLVGMQPSSEMINSWRPFLRDFSTTLSNMTLDLKDTPSPM
SINSYDPGNYRSTFERIASHATNRRITLTRYGAAYLHIVSQIRTKIKQQQSLPIDPVEYP
SHSYTVSLQPNLLHMLPLVASLNHLYATPIGGEFTFDVGSLMQIAQVAVCFHPAFLNFEN
SKRITSTGINLDDLLTAALQETTLQETARKQRXQ
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AFM133 (AFM133Q) /CSM/AF/AFM1-B/AFM133Q.Seq.d/                       1984   0.0
AFM794 (AFM794Q) /CSM/AF/AFM7-D/AFM794Q.Seq.d/                       1231   0.0
AFC792 (AFC792Q) /CSM/AF/AFC7-D/AFC792Q.Seq.d/                        977   0.0
AHN637 (AHN637Q) /CSM/AH/AHN6-B/AHN637Q.Seq.d/                        767   0.0
AHM215 (AHM215Q) /CSM/AH/AHM2-A/AHM215Q.Seq.d/                        767   0.0
AHL347 (AHL347Q) /CSM/AH/AHL3-B/AHL347Q.Seq.d/                        767   0.0
AHK632 (AHK632Q) /CSM/AH/AHK6-B/AHK632Q.Seq.d/                        767   0.0
AHJ182 (AHJ182Q) /CSM/AH/AHJ1-D/AHJ182Q.Seq.d/                        767   0.0
AHI881 (AHI881Q) /CSM/AH/AHI8-D/AHI881Q.Seq.d/                        767   0.0
AHF313 (AHF313Q) /CSM/AH/AHF3-A/AHF313Q.Seq.d/                        767   0.0
own update 2009. 4. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ346836) Dictyostelium discoideum cDNA clone:dda25a09, 3' ...  1255   0.0    1
(BJ347372) Dictyostelium discoideum cDNA clone:dda26l23, 3' ...  1213   0.0    2
(BJ332033) Dictyostelium discoideum cDNA clone:dda37p21, 5' ...   718   0.0    3
(BJ324548) Dictyostelium discoideum cDNA clone:dda6h23, 5' e...   977   0.0    1
(BJ329500) Dictyostelium discoideum cDNA clone:dda25a09, 5' ...   755   0.0    3
(BJ335319) Dictyostelium discoideum cDNA clone:dda49c21, 5' ...   755   0.0    3
(BJ337687) Dictyostelium discoideum cDNA clone:dda58i10, 5' ...   755   0.0    3
(BJ327598) Dictyostelium discoideum cDNA clone:dda21f04, 5' ...   755   0.0    3
(BJ335053) Dictyostelium discoideum cDNA clone:dda48b22, 5' ...   755   0.0    3
(BJ336022) Dictyostelium discoideum cDNA clone:dda52o08, 5' ...   755   0.0    3
dna update 2009. 4. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC033372_1(BC033372|pid:none) Homo sapiens AHNAK nucleoprotein 2...    35   7.1
AB095939_1(AB095939|pid:none) Homo sapiens mRNA for KIAA2019 pro...    35   7.1
BC049216_1(BC049216|pid:none) Homo sapiens AHNAK nucleoprotein 2...    35   7.1
BX538133_1(BX538133|pid:none) Homo sapiens mRNA; cDNA DKFZp686A2...    35   7.1
BX538040_1(BX538040|pid:none) Homo sapiens mRNA; cDNA DKFZp686E1...    35   7.1
BC011859_1(BC011859|pid:none) Homo sapiens AHNAK nucleoprotein 2...    35   7.1
BX538106_1(BX538106|pid:none) Homo sapiens mRNA; cDNA DKFZp686J0...    35   7.1
(Q8E8D9) RecName: Full=Formamidopyrimidine-DNA glycosylase;     ...    35   7.1
protein update 2009. 4. 4
PSORT 

 psg: 0.00  gvh: 0.00  alm: 0.00  top: 0.00  tms: 0.00  mit: 0.00  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	100.0 %: 

>> prediction for AFM133 is

5' end seq. ID AFM133F
5' end seq. 
>AFM133F.Seq
AAAACATCTCTATTTTATTATATAAAAGCTACACATTGTAAATCCAAAATTTCATTACCT
TTCAAAATGGAAAACCCATTCAATTCCAATACTTATAATAATAATTATAATAATACTAAT
TATAATAATAATAATAATTATTATTATAATAATAATAATAATTATAGTAATAATTATTAT
AATAATAATTATAATAATAATAATTTGAATAATAATTATACCAGTTGTAGTAATCATCTC
AACCTAACTCCTGAAGAATCTATGATTGATCAACCAAAGGAAAAAGAACAACCTATGCCT
TTCTCTGCACAAGACAGAACTTTGGCAGTTACTACACCGTCCAATCTAGCAATAGAATCT
CAAGTTACCGATCTGTTGAGAGAGGATGAGGAACCATCTGCTGATGCATCGCCAGCTACT
ACCTTTTCCATACAATTAATCGCCAAAGGAGGGCATGTTATTTACCTTAACCATCCAAAT
GCTCAAGTAGCTACTCTCAAGGTTCAACTACCTGATACCGCACCATCCACTTTAGAATTA
CCATTACAAATAACTCCAGCAATAGACGTAAAGCAACTTGCAATATCGACCCATGATTAC
CAAAAAAATCGGGTGAAGGTATGCGTACXXXXXXXXXX
Length of 5' end seq. 638
3' end seq. ID AFM133Z
3' end seq. 
>AFM133Z.Seq
XXXXXXXXXXGCGGTATAGAACTAGATACAGAGAAATTGATTACAGATATCGTATCAGGG
TTCCATTTAGTAGGCATGCAGCCTTCTTCGGAAATGATCAATAGTTGGCGTCCTTTTTTA
AGAGACTTCTCTACTACACTCTCCAATATGACTCTGGACTTAAAGGATACCCCTTCTCCG
ATGTCAATTAATTCTTATGATCCAGGTAACTATCGCAGTACCTTTGAGCGAATAGCGAGT
CATGCTACTAATAGAAGAATTACCCTCACACGATATGGGGCAGCCTACTTGCATATCGTG
AGCCAAATAAGAACAAAGATCAAACAACAGCAAAGCCTTCCCATTGACCCAGTTGAGTAT
CCTTCCCATAGCTATACGGTAAGCTTACAACCCAACTTATTGCATATGCTACCCTTGGTG
GCCTCGCTGAATCATCTCTATGCTACGCCCATAGGAGGAGAATTTACCTTTGATGTAGGT
AGTTTAATGCAGATAGCCCAGGTCGCTGTATGCTTTCATCCTGCTTTTTTAAATTTTGAA
AATTCTAAAAGAATTACTTCTACTGGCATCAACCTAGATGATTTACTCACTGCTGCTTTA
CAAGAAACCACTTTGCAAGAGACTGCAAGAAAGCAAAGGNATCAACA
Length of 3' end seq. 647
Connected seq. ID AFM133P
Connected seq. 
>AFM133P.Seq
AAAACATCTCTATTTTATTATATAAAAGCTACACATTGTAAATCCAAAATTTCATTACCT
TTCAAAATGGAAAACCCATTCAATTCCAATACTTATAATAATAATTATAATAATACTAAT
TATAATAATAATAATAATTATTATTATAATAATAATAATAATTATAGTAATAATTATTAT
AATAATAATTATAATAATAATAATTTGAATAATAATTATACCAGTTGTAGTAATCATCTC
AACCTAACTCCTGAAGAATCTATGATTGATCAACCAAAGGAAAAAGAACAACCTATGCCT
TTCTCTGCACAAGACAGAACTTTGGCAGTTACTACACCGTCCAATCTAGCAATAGAATCT
CAAGTTACCGATCTGTTGAGAGAGGATGAGGAACCATCTGCTGATGCATCGCCAGCTACT
ACCTTTTCCATACAATTAATCGCCAAAGGAGGGCATGTTATTTACCTTAACCATCCAAAT
GCTCAAGTAGCTACTCTCAAGGTTCAACTACCTGATACCGCACCATCCACTTTAGAATTA
CCATTACAAATAACTCCAGCAATAGACGTAAAGCAACTTGCAATATCGACCCATGATTAC
CAAAAAAATCGGGTGAAGGTATGCGTAC----------GCGGTATAGAACTAGATACAGA
GAAATTGATTACAGATATCGTATCAGGGTTCCATTTAGTAGGCATGCAGCCTTCTTCGGA
AATGATCAATAGTTGGCGTCCTTTTTTAAGAGACTTCTCTACTACACTCTCCAATATGAC
TCTGGACTTAAAGGATACCCCTTCTCCGATGTCAATTAATTCTTATGATCCAGGTAACTA
TCGCAGTACCTTTGAGCGAATAGCGAGTCATGCTACTAATAGAAGAATTACCCTCACACG
ATATGGGGCAGCCTACTTGCATATCGTGAGCCAAATAAGAACAAAGATCAAACAACAGCA
AAGCCTTCCCATTGACCCAGTTGAGTATCCTTCCCATAGCTATACGGTAAGCTTACAACC
CAACTTATTGCATATGCTACCCTTGGTGGCCTCGCTGAATCATCTCTATGCTACGCCCAT
AGGAGGAGAATTTACCTTTGATGTAGGTAGTTTAATGCAGATAGCCCAGGTCGCTGTATG
CTTTCATCCTGCTTTTTTAAATTTTGAAAATTCTAAAAGAATTACTTCTACTGGCATCAA
CCTAGATGATTTACTCACTGCTGCTTTACAAGAAACCACTTTGCAAGAGACTGCAAGAAA
GCAAAGGNATCAACA
Length of connected seq. 1265
Full length Seq ID -
Full length Seq. -
Length of full length seq. -